| Literature DB >> 35852574 |
Florian Hinterwimmer1,2, Sarah Consalvo3, Jan Neumann4, Daniel Rueckert5, Rüdiger von Eisenhart-Rothe3, Rainer Burgkart3.
Abstract
Musculoskeletal malignancies are a rare type of cancer. Consequently, sufficient imaging data for machine learning (ML) applications is difficult to obtain. The main purpose of this review was to investigate whether ML is already having an impact on imaging-driven diagnosis of musculoskeletal malignancies and what the respective reasons for this might be. A scoping review was conducted by a radiologist, an orthopaedic surgeon and a data scientist to identify suitable articles based on the PRISMA statement. Studies meeting the following criteria were included: primary malignant musculoskeletal tumours, machine/deep learning application, imaging data or data retrieved from images, human/preclinical, English language and original research. Initially, 480 articles were found and 38 met the eligibility criteria. Several continuous and discrete parameters related to publication, patient distribution, tumour specificities, ML methods, data and metrics were extracted from the final articles. For the synthesis, diagnosis-oriented studies were further examined by retrieving the number of patients and labels and metric scores. No significant correlations between metrics and mean number of samples were found. Several studies presented that ML could support imaging-driven diagnosis of musculoskeletal malignancies in distinct cases. However, data quality and quantity must be increased to achieve clinically relevant results. Compared to the experience of an expert radiologist, the studies used small datasets and mostly included only one type of data. Key to critical advancement of ML models for rare diseases such as musculoskeletal malignancies is a systematic, structured data collection and the establishment of (inter)national networks to obtain substantial datasets in the future. KEY POINTS: • Machine learning does not yet significantly impact imaging-driven diagnosis for musculoskeletal malignancies compared to other disciplines such as lung, breast or CNS cancer. • Research in the area of musculoskeletal tumour imaging and machine learning is still very limited. • Machine learning in musculoskeletal tumour imaging is impeded by insufficient availability of data and rarity of the disease.Entities:
Keywords: Deep learning; Diagnostic imaging; Imaging-driven diagnosis; Machine learning; Primary musculoskeletal malignancies
Mesh:
Year: 2022 PMID: 35852574 PMCID: PMC9474640 DOI: 10.1007/s00330-022-08981-3
Source DB: PubMed Journal: Eur Radiol ISSN: 0938-7994 Impact factor: 7.034
Fig. 1Selection process
Final articles with continuous and discrete parameters. Acc and AUC values as well as number of labels were further investigated for articles with diagnosis-oriented tasks
| Author | Year | Number of patients / cases | Healthy cases | Benign cases | Intermediate cases | Malignant cases | Metastases cases | Study design | Tumour entity group | Imaging modality | Radiomic data | Algorithm | Task | Model | Applied metric | Outcome label | Diagnosis-oriented | Acc | AUC | Number of labels |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bandyopadhyay et al | 2019 | 150 | 0 | 0 | 0 | 150 | 0 | Retrospective | Bone tumours | X-ray | No | Supervised | Classification | SVM, decision tree | acc, sens, Dice | Histopathological grading, staging | ✓ | 0.85 | 2 | |
| Banerjee et al | 2018 | 21 | 0 | 0 | 0 | 21 | 0 | Retrospective | Soft tissue tumours | MRI | No | Supervised | Classification | AlexNet | acc, AUC, sens, spec | Tumour entities | ✓ | 0.85 | 2 | |
| Chianca et al | 2021 | 146 | 0 | 49 | 0 | 40 | 57 | Retrospective | Bone tumours | MRI | Yes | Supervised | Classification | LogitBoost, SVM | AUC, sens, spec, acc | Malignancy | ✓ | 0.90 | 2 | |
| Do et al | 2021 | 1576 | 381 | 1061 | 0 | 134 | 0 | Retrospective | Bone tumours | X-ray | No | Supervised | Classification, segmentation | UNet | acc, IoU | Segmented tumour, tumour entities | ✓ | 0.99 | 3 | |
| Dufau et al | 2019 | 69 | 0 | 0 | 0 | 69 | 0 | Retrospective | Bone tumours | MRI | Yes | Supervised | Classification | SVM | AUC, sens, spec | Chemotherapy response assessment | ||||
| Eweje et al | 2021 | 1060 | 0 | 582 | 0 | 478 | 0 | Retrospective | Bone tumours | MRI | No | Supervised | Classification | Efficient-Net, logistic regression | acc, sens, spec, AUC | Malignancy | ✓ | 0.79 | 2 | |
| Fields et al | 2021 | 128 | 0 | 36 | 0 | 92 | 0 | Retrospective | Soft tissue tumours | MRI | Yes | Supervised | Classification | Adaboost, random forest | AUC, sens, spec | Malignancy | ✓ | 0.77 | 2 | |
| Gao et al | 2021 | 30 | 0 | 0 | 0 | 30 | 0 | Prospective | Soft tissue tumours | MRI | No | Supervised | Classification | VGG19 | sens, spec, acc | Radiotherapy response assessment | ||||
| Gao et al | 2020 | 30 | 0 | 0 | 0 | 30 | 0 | Prospective | Soft tissue tumours | MRI | Yes | Supervised | Classification | SVM, logistic regression | AUC | Radiotherapy response assessment | ||||
| García-Gómez et al | 2004 | 430 | 0 | 267 | 0 | 163 | 0 | Retrospective | Soft tissue tumours | MRI | No | Supervised | Classification | K-nearest neighbour, SVM | sens, spec | Malignancy | ✓ | 0.90 | 2 | |
| Gitto et al | 2020 | 58 | 0 | 0 | 0 | 58 | 0 | Retrospective | Bone tumours | MRI | Yes | Supervised | Classification | LogitBoost | acc, AUC | Histopathological grading | ✓ | 0.75 | 0.78 | 2 |
| Glass et al | 1998 | 43 | 0 | 0 | 0 | 43 | 0 | Retrospective | Bone tumours | MRI | No | Unsupervised | Segmentation | Neural network | acc, sens, spec | Chemotherapy response assessment | ||||
| He et al | 2020 | 1356 | 0 | 679 | 0 | 360 | 317 | Retrospective | Bone tumours | X-ray | No | Supervised | Classification | Efficient-Net | AUC, sens, spec, acc | Malignancy | ✓ | 0.73 | 2 | |
| Holbrook et al | 2020 | 79 | 0 | 0 | 0 | 79 | 0 | Unknown | Soft tissue tumours | MRI | Yes | Supervised | Segmentation | SVM, neural network | Dice, AUC | Segmented tumour | ||||
| Hu et al | 2021 | 160 | 0 | 90 | 0 | 70 | 0 | Retrospective | Soft tissue tumours | MRI | Yes | Supervised | Classification | Least absolute shrinkage and selection operator | AUC, sens, spec, acc | Malignancy | ✓ | 0.92 | 0.96 | 2 |
| Hu et al | 2014 | 141 | 0 | 71 | 0 | 70 | 0 | Unknown | Bone tumours | X-ray | No | Supervised | Classification | SVM | acc, AUC, sens, spec | Tumour occurrence | ✓ | 0.96 | 2 | |
| Huang et al | 2020 | 12 | 0 | 0 | 0 | 12 | 0 | Prospective | Bone tumours | MRI | No | Supervised | Classification | Random forest | AUC, sens, spec, acc | Chemotherapy response assessment | ||||
| Huang et al | 2017 | 23 | 0 | 0 | 0 | 23 | 0 | Unknown | Bone tumours | CT | No | Supervised | Segmentation | VGG16 | Dice score | Segmented tumour | ||||
| Juntu et al | 2010 | 135 | 0 | 86 | 0 | 49 | 0 | Unknown | Soft tissue tumours | MRI | No | Supervised | Classification | SVM, neural network, decision tree | AUC, sens, spec, acc | Malignancy | ✓ | 0.93 | 2 | |
| Leporq et al | 2020 | 81 | 0 | 40 | 0 | 41 | 0 | Retrospective | Soft tissue tumours | MRI | Yes | Supervised | Classification | SVM | AUC, sens, spec, acc | Malignancy | ✓ | 0.95 | 0.96 | 2 |
| Li et al | 2019 | 210 | 0 | 154 | 0 | 56 | 0 | Retrospective | Bone tumours | MRI | Yes | Supervised | Classification | SVM | AUC, sens, spec, acc | Tumour entities | ✓ | 0.87 | 2 | |
| Liu et al | 2021 | 643 | 0 | 392 | 93 | 158 | 0 | Retrospective | Bone tumours | X-ray | No | Supervised | Classification | XGBoost, Inception V3 | AUC, sens, spec, acc | Malignancy | ✓ | 0.87 | 3 | |
| Pan et al | 2021 | 796 | 0 | 412 | 169 | 215 | 0 | Retrospective | Bone tumours | X-ray | No | Supervised | Classification | Random forest | AUC, acc | Malignancy | ✓ | 0.95 | 0.97 | 3 |
| Peeken et al | 2019 | 221 | 0 | 221 | 0 | 0 | 0 | Retrospective | Soft tissue tumours | CT | Yes | Supervised | Classification | Random forest | AUC, Dice | Histopathological grading | ✓ | 0.64 | 2 | |
| Peeken et al | 2018 | 136 | 0 | 0 | 0 | 136 | 0 | Retrospective | Soft tissue tumours | MRI, CT | No | Supervised | Classification | Random forest | AUC, sens, spec, acc | Prognosis | ||||
| Reinus et al | 1994 | 709 | 0 | 492 | 0 | 217 | 0 | Retrospective | Bone tumours | X-ray | No | Supervised | Classification | Neural network | acc | Malignancy | ✓ | 0.85 | 2 | |
| Shen et al | 2018 | 36 | 0 | 15 | 0 | 21 | 0 | Unknown | Bone tumours | X-ray | No | Supervised | Classification | Random forest, SVM | AUC, sens, spec, acc | Malignancy | ✓ | 0.85 | 0.94 | 2 |
| Terunuma et al | 2018 | 1 | N/A | N/A | N/A | N/A | N/A | Retrospective | Bone tumours | X-ray | No | Supervised | Object detection, segmentation | SegNet | Jaccard index | Segmented tumour | ||||
| von Schacky et al | 2021 | 934 | 0 | 623 | 0 | 311 | 0 | Retrospective | Bone tumours | X-ray | No | Supervised | Object detection, segmentation, classification | Mask-RCNN | acc, sens, spec, IoU, Dice | Malignancy | ||||
| Vos et al | 2019 | 116 | 0 | 58 | 0 | 58 | 0 | Retrospective | Soft tissue tumours | MRI | Yes | Supervised | Classification | SVM, random forest | AUC, sens, spec | Tumour entities | ✓ | 0.89 | 2 | |
| Wang et al | 2021 | 227 | 0 | 147 | 0 | 80 | 0 | Retrospective | Bone tumours | US | No | Supervised | Classification | VGG16 | acc, sens, spec, AUC | Malignancy | ✓ | 0.79 | 0.91 | 2 |
| Wang et al | 2020 | 206 | 0 | 105 | 0 | 93 | 8 | Retrospective | Soft tissue tumours | MRI | Yes | Supervised | Classification | SVM, generalised linear models, random forest | AUC, sens, spec, acc | Malignancy | ✓ | 0.86 | 0.92 | 2 |
| Yin et al | 2019 | 120 | 0 | 0 | 30 | 54 | 36 | Retrospective | Bone tumours | MRI | Yes | Supervised | Classification | Random forest | AUC, acc | Segmented tumour, tumour entities | ✓ | 0.71 | 0.77 | 3 |
| Yin et al | 2019 | 95 | 0 | 0 | 42 | 53 | 0 | Retrospective | Bone tumours | CT | Yes | Supervised | Classification | Random forest | acc, AUC | Tumour entities | ✓ | 0.90 | 0.98 | 2 |
| Yin et al | 2021 | 795 | 0 | 215 | 0 | 399 | 181 | Retrospective | Bone tumours | CT | Yes | Supervised | Classification | Random forest | AUC, acc | Tumour entities | ✓ | 0.88 | 0.93 | 2 |
| Zhang et al | 2020 | 51 | N/A | N/A | N/A | N/A | N/A | Retrospective | Soft tissue tumours | MRI, CT | No | Supervised | Classification | Inception-v3 | acc, AUC | Histopathological grading | ✓ | 0.86 | 0.97 | 3 |
| Zhang et al | 2019 | 35 | 0 | 0 | 0 | 35 | 0 | Retrospective | Soft tissue tumours | MRI | Yes | Supervised | Classification | Random forest, SVM | AUC, sens, spec, acc | Histopathological grading | ✓ | 0.88 | 0.92 | 2 |
| Zhang et al | 2018 | 23 | 0 | 0 | 0 | 23 | 0 | Unknown | Bone tumours | CT | No | Supervised | Segmentation | ResNet-50 | Dice, sens | Segmented tumour |
SVM support vector machine, IoU intersection over union N/A not assessed
Continuous parameters with interval, median, mean IQR, and standard deviation
| Continuous parameters | |||||
|---|---|---|---|---|---|
| Parameter | Interval | Median | IQR | Mean | Std |
| Year of publication | [1994; 2021] | 2020 | 3 | 2018 | 6 |
| Number of patients/cases | [1; 1565] | 132.0 | 180.5 | 292.0 | 392.0 |
| Healthy | [0; 381] | 0.0 | 0.0 | 10.6 | 62.6 |
| Benign | [0; 1061] | 38.0 | 154.2 | 154.8 | 248.3 |
| Intermediate | [0; 169] | 0.0 | 4.6 | 9.3 | 32.0 |
| Malignant | [12; 478] | 69.5 | 79.5 | 115.1 | 113.4 |
| Metastases | [0; 317] | 0.0 | 4.3 | 17.1 | 60.4 |
IQR interquartile range, std standard deviation
Discrete parameters with incidence and percentage share per entity
| Discrete parameters | |||
|---|---|---|---|
| Parameter | Entity | Σ | % |
| Study design | |||
| Retrospective | 28 | 75.7% | |
| Prospective | 3 | 8.1% | |
| Unknown | 6 | 16.2% | |
| Task | |||
| Classification | 33 | 80.5% | |
| Segmentation | 6 | 14.6% | |
| Object detection | 2 | 4.9% | |
| Model | |||
| AlexNet | 1 | 1.9% | |
| LogitBoost | 2 | 3.8% | |
| Support vector machine | 14 | 26.4% | |
| U-Net | 1 | 1.9% | |
| Efficient-Net | 2 | 3.8% | |
| Logistic regression | 2 | 3.8% | |
| Adaboost | 1 | 1.9% | |
| Random forests | 12 | 22.6% | |
| VGG19 | 1 | 1.9% | |
| k-nearest neighbour | 1 | 1.9% | |
| Neural network | 4 | 7.5% | |
| LASSO | 1 | 1.9% | |
| VGG16 | 2 | 3.8% | |
| Decision tree | 2 | 3.8% | |
| XGBoost | 1 | 1.9% | |
| Inception v3 | 2 | 3.8% | |
| SegNet | 1 | 1.9% | |
| Mask RCNN | 1 | 1.9% | |
| Generalised linear model | 1 | 1.9% | |
| ResNet-50 | 1 | 1.9% | |
| Diagnosis oriented | |||
| Yes | 27 | 71.1% | |
| No | 11 | 28.9% | |
| Outcome label | |||
| Segmented tumour | 6 | 14.6% | |
| Tumour entities | 7 | 17.1% | |
| Tumour occurrence | 1 | 2.4% | |
| Histopathological grading | 5 | 12.2% | |
| Radiotherapy response | 2 | 4.9% | |
| Chemotherapy response | 3 | 7.3% | |
| Malignancy | 15 | 36.6% | |
| Staging | 1 | 2.4% | |
| Prognosis | 1 | 2.4% | |
| Tumour group | |||
| Bone tumour | 23 | 60.5% | |
| Soft tissue tumour | 15 | 39.5% | |
| Imaging modality | |||
| MRI | 22 | 55.0% | |
| CT | 7 | 17.5% | |
| X-ray | 10 | 25.0% | |
| US | 1 | 2.5% | |
| Radiomic data | |||
| Yes | 16 | 42.1% | |
| No | 22 | 57.9% | |
| Algorithm | |||
| Supervised | 37 | 97.4% | |
| Unsupervised | 1 | 2.6% | |
| Reinforcement | 0 | 0.0% | |
| Applied metric | |||
| Accuracy | 29 | 25.4% | |
| Sensitivity | 25 | 21.9% | |
| Specificity | 23 | 20.2% | |
| AUC | 28 | 24.6% | |
| Jaccard index | 1 | 0.9% | |
| Intersection over union | 2 | 1.8% | |
| Dice score | 6 | 5.3% | |
LASSO Least Absolute Shrinkage and Selection Operator
Continuous parameters of diagnosis-oriented studies with interval, median, mean and standard deviation
| Continuous parameters of diagnosis-oriented parameters | |||||
|---|---|---|---|---|---|
| Parameter | Interval | Median | IQR | Mean | std |
| ACC | [0.71; 0.99] | 0.88 | 0.07 | 0.87 | 0.07 |
| AUC | [0.64; 0.98] | 0.92 | 0.14 | 0.88 | 0.09 |
| Number of labels | [2; 3] | 2 | 0 | 2.19 | 0.39 |
IQR interquartile range, std standard deviation
Fig. 2Distribution of final metric scores against the mean number of samples per class label