Literature DB >> 35849973

NMR as a readout to monitor and restore the integrity of complex chemoenzymatic reactions.

Kenneth A Marincin1, Yousang Hwang2, Everett S Kengmana3, David J Meyers2, Dominique P Frueh4.   

Abstract

The non-invasive nature of NMR offers a means to monitor biochemical reactions in situ at the atomic level. We harness this advantage to monitor a complex chemoenzymatic reaction that sequentially modifies reagents and loads the product on a nonribosomal peptide synthetase carrier protein. We present a protocol including a pulse sequence that permits to assess both the integrity of reagents and the completion of each step in the reaction, thus alleviating otherwise time-consuming and costly approaches to debug and repeat inefficient reactions. This study highlights the importance of NMR as a tool to establish reliable and reproducible experimental conditions in biochemical studies.
Copyright © 2022 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chemoenzymatic reactions; Diffusion; Isotope filter; NMR

Mesh:

Year:  2022        PMID: 35849973      PMCID: PMC9463103          DOI: 10.1016/j.jmr.2022.107265

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.734


  34 in total

Review 1.  In-cell NMR spectroscopy.

Authors:  Z Serber; V Dötsch
Journal:  Biochemistry       Date:  2001-12-04       Impact factor: 3.162

2.  A new enzyme superfamily - the phosphopantetheinyl transferases.

Authors:  R H Lambalot; A M Gehring; R S Flugel; P Zuber; M LaCelle; M A Marahiel; R Reid; C Khosla; C T Walsh
Journal:  Chem Biol       Date:  1996-11

3.  One-pot chemo-enzymatic synthesis of reporter-modified proteins.

Authors:  Andrew S Worthington; Michael D Burkart
Journal:  Org Biomol Chem       Date:  2005-11-24       Impact factor: 3.876

4.  Molecular impact of covalent modifications on nonribosomal peptide synthetase carrier protein communication.

Authors:  Andrew C Goodrich; David J Meyers; Dominique P Frueh
Journal:  J Biol Chem       Date:  2017-04-28       Impact factor: 5.157

5.  An enhanced chemoenzymatic method for loading substrates onto carrier protein domains.

Authors:  Tiia Kittilä; Max J Cryle
Journal:  Biochem Cell Biol       Date:  2017-11-24       Impact factor: 3.626

6.  A nuclear magnetic resonance method for probing molecular influences of substrate loading in nonribosomal peptide synthetase carrier proteins.

Authors:  Andrew C Goodrich; Dominique P Frueh
Journal:  Biochemistry       Date:  2015-01-29       Impact factor: 3.162

7.  Conformational motions regulate phosphoryl transfer in related protein tyrosine phosphatases.

Authors:  Sean K Whittier; Alvan C Hengge; J Patrick Loria
Journal:  Science       Date:  2013-08-23       Impact factor: 47.728

8.  Structures of a non-ribosomal peptide synthetase condensation domain suggest the basis of substrate selectivity.

Authors:  Thierry Izoré; Y T Candace Ho; Joe A Kaczmarski; Athina Gavriilidou; Ka Ho Chow; David L Steer; Robert J A Goode; Ralf B Schittenhelm; Julien Tailhades; Manuela Tosin; Gregory L Challis; Elizabeth H Krenske; Nadine Ziemert; Colin J Jackson; Max J Cryle
Journal:  Nat Commun       Date:  2021-05-04       Impact factor: 14.919

9.  Single-particle cryo-EM at atomic resolution.

Authors:  Takanori Nakane; Abhay Kotecha; Andrija Sente; Greg McMullan; Simonas Masiulis; Patricia M G E Brown; Ioana T Grigoras; Lina Malinauskaite; Tomas Malinauskas; Jonas Miehling; Tomasz Uchański; Lingbo Yu; Dimple Karia; Evgeniya V Pechnikova; Erwin de Jong; Jeroen Keizer; Maarten Bischoff; Jamie McCormack; Peter Tiemeijer; Steven W Hardwick; Dimitri Y Chirgadze; Garib Murshudov; A Radu Aricescu; Sjors H W Scheres
Journal:  Nature       Date:  2020-10-21       Impact factor: 69.504

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