We recorded the far- and near-UV circular dichroism (CD) spectra of solutions of α-chymotrypsin and sodium dodecyl sulfate (SDS) with the final surfactant concentration significantly above the critical micellization concentration. Solutions were prepared using three different procedures. The reference procedure was to mix the chymotrypsin solution with the SDS solution once, immediately achieving the final SDS concentration. In alternative procedures, the protein solutions initially contained some SDS and were mixed with pure SDS solutions at a concentration to provide the same final surfactant as the reference mixing. We demonstrate that the supplementation to the selected final concentration of SDS of the pure chymotrypsin solution leads to different CD spectra than the supplementation to this final concentration of SDS in the chymotrypsin solution containing a small concentration of a few millimolar SDS. These differences disappear when the initial concentration of SDS in the protein solution, which we then supplement to the indicated final concentration, is higher. This suggests the irreversibility of the processes caused by the addition of SDS to chymotrypsin and the influence of the initial amount of this surfactant on the processes occurring with its further addition to the solution. For quantitative analysis of far-UV CD spectra in terms of populations of protein secondary structure elements, we used four well-established software packages. All programs consistently indicate that the observed differences in the far-UV CD spectra can be explained by the differences in the increase in the population of helical forms in chymotrypsin under the influence of SDS.
We recorded the far- and near-UV circular dichroism (CD) spectra of solutions of α-chymotrypsin and sodium dodecyl sulfate (SDS) with the final surfactant concentration significantly above the critical micellization concentration. Solutions were prepared using three different procedures. The reference procedure was to mix the chymotrypsin solution with the SDS solution once, immediately achieving the final SDS concentration. In alternative procedures, the protein solutions initially contained some SDS and were mixed with pure SDS solutions at a concentration to provide the same final surfactant as the reference mixing. We demonstrate that the supplementation to the selected final concentration of SDS of the pure chymotrypsin solution leads to different CD spectra than the supplementation to this final concentration of SDS in the chymotrypsin solution containing a small concentration of a few millimolar SDS. These differences disappear when the initial concentration of SDS in the protein solution, which we then supplement to the indicated final concentration, is higher. This suggests the irreversibility of the processes caused by the addition of SDS to chymotrypsin and the influence of the initial amount of this surfactant on the processes occurring with its further addition to the solution. For quantitative analysis of far-UV CD spectra in terms of populations of protein secondary structure elements, we used four well-established software packages. All programs consistently indicate that the observed differences in the far-UV CD spectra can be explained by the differences in the increase in the population of helical forms in chymotrypsin under the influence of SDS.
Research
on protein–surfactant interactions has a long history
owing to their importance in the pharmaceutical, food, and cosmetics
industries.[1−9] Sodium dodecyl sulfate (SDS), an anionic detergent known to unfold
globular proteins, is most commonly used in these studies as a representative
surfactant.[2,3,10,11]The research described in this paper tackles
problems related to
the free protein fraction in the presence of SDS, reversibility of
protein–SDS binding, and reversibility of changes induced by
SDS in protein structures that thus far have not been fully explained.[3]Otzen and coauthors assumed equilibrium
of the free protein and
an initial complex of the protein with a certain number of bound SDS
molecules followed by an irreversible one-step structural change of
the complex.[12−14] However, in their more recent work on SDS-triggerd
protein unfolding, they do not define this process as irreversible.[5,15,16] Bhuyan,[17] who investigated the action of SDS on the ferrocytochrome c, noted minima in the dependence of the observed rate constants
for protein conformational transitions on the SDS concentration, which
were interpreted as an indication that these transitions are reversible.Others proposed that protein–surfactant solutions contain
not only different types of protein–surfactant complexes but
also free protein molecules, free surfactant molecules, and surfactant
micelles (provided that the surfactant concentration is above the
critical micelle concentration (CMC)).[4]On the other hand, Takeda and coauthors[3,18] stated
that there is no free protein in a protein–SDS solution and
that denaturation of proteins by surfactants is not easily reversible
by any means. In addition, they pointed out discontinuous mobility
changes of surfactant–protein complexes observed in capillary
electrophoresis (CE) experiments with an increasing SDS concentration
(first reported by Sasa and Takeda for bovine serum albumin (BSA)[19]). These changes are related to distinct protein–SDS
complexes. According to Takeda and Moriyama,[3] there are specific numbers of surfactant molecules that the protein
can form complexes with. Therefore, there are certain threshold SDS
concentration values corresponding to different numbers of surfactant
molecules bound by each protein. When a protein solution is mixed
with an SDS solution in which the concentration of the surfactant
falls between two consecutive threshold values, each protein binds
the same specific number of SDS molecules and subsequently assumes
a certain conformation, in one irreversible step, without changing
the amount of the bound surfactant.Our contribution to the
field of protein–surfactant interactions,
presented in the current work, is evidence that far- and near-UV CD
spectra of α-chymotrypsin (CHA)–surfactant solutions
(and thus the secondary and tertiary structures[20] of CHA) depend not only on the concentration of the surfactant
but also on the procedure in which this concentration is established.
In addition, we present CD spectra of CHA–SDS solutions below
and near the critical micelle concentration whose properties can be
related to the discontinuous mobility changes of the surfactant–protein
complexes discussed above.The research presented in the current
paper originated from the
following circumstances. We attempted to interpret the reaction progress
curves recorded in the stopped-flow spectrometer after mixing chymotrypsin
and SDS solutions. Numerical analysis of these curves did not allow
us to conclude whether the occurring single-molecule transformations
of the protein are reversible or unidirectional. Therefore, we conducted
a series of experiments in which we mixed protein solutions with a
certain amount of SDS already added with solutions of pure SDS. We
thought that such experiments would allow us to answer the question
about the reversibility of SDS-triggered conformational transitions
of chymotrypsin. From these new experiments it became apparent that
the CD spectra of chymotrypsin–SDS solutions depend on the
procedure of their preparation.
Materials and Methods
Preparation
of Solutions
All chemicals used in the
present work were obtained from ROTH: Chymotrypsin (ROTH, ≥1000
USP-U/mg, for biochemistry, Art-Nr. 0238.3), sodium dodecyl sulfate
(ROTH, ≥99%, for electrophoresis, biochemistry, and molecular
biology, Art-Nr. 2326.1), sodium dihydrogen phosphate monohydrate
(ROTH, ≥98%, p.a., ACS, Art.-Nr. K300.1), disodium hydrogen
phosphate dehydrate (ROTH, ≥98%, p.a., ACS, Art.-Nr. 4984.2),
sodium chloride (ROTH, ≥98%, p.a., ACS, ISO, Art.-Nr. 3957.1),
and L-tryptophan (ROTH, ≥98,5%, Ph. Eur., for biochemistry,
Art.-Nr. 4858.1). Reagent weights for buffers were made with an accuracy
of 1 mg.Chymotrypsin and SDS were dissolved in sodium phosphate
buffer (10 mM, pH = 7), prepared using ultrapure Millipore Milli-Q
water (resistance 18.2 MΩ cm–1). Solutions
used in the experiments were prepared by diluting appropriate stock
solutions of chymotrypsin and SDS. The concentration of the stock
protein solution was ∼50 μM, controlled spectrophotometrically
(with a UV-2401-PC Shimadzu spectrometer) using ϵ282nm = 51 000 M–1 cm–1. The
concentration of the stock SDS solution, 400 mM, was prepared by weight.
SDS weights were prepared with an accuracy of 0.01 mg. Dilution and/or
mixing of the stock solutions secures the best consistency of concentrations
of the following parent solutions: 40 μM CHA, 20 μM CHA,
40 μM CHA with 6 mM SDS, 20 μM CHA with 6 mM SDS, 40 μM
CHA with 20 mM SDS, 20 μM CHA with 20 mM SDS, 80 mM SDS, 74
mM SDS, 60 mM SDS, and 6 mM SDS. The above parent solutions were prepared
from the stock solutions at least 1 h before the spectrophotometric
experiments.
Spectrophotometric Measurements
Circular dichroism
spectra were collected using a Chirascan Plus (Applied Photophysics
Ltd.) spectrometer that enables simultaneous measurement of CD and
absorbance spectra. For the far-UV range (190–260 nm), a 1
mm cell was used. For the near-UV range (250–350 nm), a 10
mm cell was used. CD spectra of either CHA solutions or the buffer
were scanned with a 0.5 s integration, 0.5 nm step resolution, and
1 nm bandwidth. Each spectrum is the average of 20 scans; thus, the
total integration time for each point of the spectrum is 10 s. Prior
to spectra measurements, the CD baseline was recorded with an empty
cell holder and with a 10 s integration. From each recorded spectrum
of CHA solution, the corresponding smoothed buffer spectrum was subtracted.
Buffer spectra were smoothed using the Savitsky–Golay method[21] implemented in an in-house software. All spectroscopic
measurements were carried out at 20 ± 0.01 °C.In
the primary experiments, spectra were recorded for the solutions listed
in Table . We used
an initial concentration of CHA of 20 μM in the far-UV and 40
μM in the near-UV. The concentration of 10 μM protein
(after 1:1 dilution) was necessary to record spectra in the far-UV
range, beginning from 190 nm. On the other hand, the protein concentration
of 20 μM (after 1:1 dilution) secures stronger signals in the
near-UV region.
Table 1
List of Mixing of Parent Solutions
in a 1:1 Volume Ratio To Obtain Solutions Tested in the Primary Part
of This Work
component 1
component 2
40 μM CHA
buffer
40 μM CHA
80 mM SDS
40 μM CHA–6 mM SDS
74 mM SDS
40 μM CHA–20 mM SDS
60 mM SDS
20 μM CHA
buffer
20 μM CHA
80 mM SDS
20 μM CHA–6 mM SDS
74 mM SDS
20 μM CHA–20 mM SDS
60 mM SDS
After mixing a given
pair of parent solutions, spectra were recorded,
and afterward, the cuvette was cleaned and dried. The next pair of
the parent solutions was then mixed, and spectra recording followed.
The recording of 20 replicates of the spectrum plus the time spent
washing and drying the cuvettes took about 40 min for the far-UV experiments
and 50 min for the near-UV experiments. After the last pair of parent
solutions was mixed, we repeated spectra recording for the first pair
using the already prepared mixture. Thus, recording of the next spectrum
for each pair commenced about 160 min for the far-UV or 200 min for
the near-UV after preparation of a given mixture. Three cycles of
the measurements were done for the far-UV range, and two cycles were
done for the near-UV range. Therefore, the stability of the spectra
of a given mixture means that no visible changes occurred within at
least 320 min (far-UV) or at least 200 min (near-UV) after preparation
(as pointed out above, the recording of 20 individual scans per spectrum
takes 40–50 min).In the additional experiments, the
spectra were recorded for the
solutions listed in Table . Spectra were recorded only once as averages of 20 scans
with a 0.5 s integration time per point at each scan, 1 h after mixing
the appropriate parent solutions. Recording of 20 scans per spectrum
took 40 min for the far-UV range and 50 min for the near-UV range.
Table 2
List of Mixing Parental Solutions
in a 1:1 Volume Ratio To Obtain Test Solutions in Additional Experiments
component 1
component 2
40 μM CHA
buffer
40 μM CHA
80 mM SDS
40 μM CHA
6 mM SDS
40 μM CHA–6 mM SDS
buffer
20 μM CHA
buffer
20 μM CHA
80 mM SDS
20 μM CHA
6 mM SDS
20 μM CHA–6 mM SDS
buffer
In 10 mM phosphate buffer, pH 7, and a temperature
of 25 °C
(5 °C higher than that used here), the CMC of SDS is 4.61 ±
0.01 mM.[22] Thus, 6 mM SDS in some of the
parent solutions described above is slightly more than the CMC. However,
after mixing 6 mM SDS with a CHA solution in a 1:1 volume ratio or
after mixing a CHA solution containing 6 mM SDS with the buffer, the
surfactant concentration becomes lower than the CMC.
Results
and Discussion
Far-UV Spectra
Figure presents the far-UV CD spectra
of solutions of 10
μM CHA in 10 mM phosphate buffer with and without 40 mM SDS.
The spectra recorded just after mixing the appropriate parent solutions
are shown as solid lines. Dashed lines correspond to spectra recorded
160 min after the first spectra. Dotted lines correspond to spectra
recorded 320 min after the first spectra. As can be seen, the spectra
are stable for at least 320 min.
Figure 1
Far-UV CD spectra of 10 μM solutions
of CHA obtained after
mixing the parent solutions specified in the legend.
Far-UV CD spectra of 10 μM solutions
of CHA obtained after
mixing the parent solutions specified in the legend.The spectra recorded for solutions obtained after mixing
a solution
of 20 μM α-chymotrypsin with the buffer and a solution
of 20 μM α-chymotrypsin with 80 mM SDS were used as reference
spectra for our discussion. These spectra qualitatively agree with
those reported in the literature.[23−26] We compare the second spectrum
with two spectra recorded for solutions where the final SDS concentration
of 40 mM was reached in two steps. In the first case, a solution of
20 μM α-chymotrypsin containing the addition of 20 mM
SDS was mixed with a solution of 60 mM SDS. In the second case, a
solution of 20 μM α-chymotrypsin containing the addition
of 6 mM SDS was mixed with a solution of 74 mM SDS. The spectrum of
the solution obtained after mixing 20 μM protein containing
the addition of 20 mM SDS with a solution of 60 mM SDS is identical
with the spectrum of the solution obtained by mixing 20 μM chymotrypsin
with 80 mM SDS. However, when 20 μM protein containing the addition
of 6 mM SDS is mixed with with a solution of 74 mM SDS, the recorded
spectrum is different. We will see similar effects in the case of
the near-UV spectra, which will be presented later in this work, and
these are the most important observations in our project that have
not been described so far by other researchers. Figure S1 in the Supporting Information shows examples of several
other mixing experiments that yielded similar sets of far-UV CD spectra.
At the same time, as shown in Figure , the absorption spectra in the range 210–230
nm in the presence of 40 mM SDS almost overlap, no matter how this
final concentration was obtained in solution, and are different from
the native protein absorption spectrum.
Figure 2
Far-UV absorption spectra
of 10 μM solutions of CHA obtained
after mixing the parent solutions specified in the legend.
Far-UV absorption spectra
of 10 μM solutions of CHA obtained
after mixing the parent solutions specified in the legend.We can also see that the spectral fragments close to 190
nm do
not cluster as in the range 210–230 nm. However, the amount
of light with wavelengths close to 190 nm reaching the detector is
small, which significantly reduces the accuracy of the measurements.
The absorption values shown in Figure are values corrected for buffer absorption. The light
absorption by the buffer around 190 nm is significant such that the
total absorption of the solution at these wavelengths exceeds 3. Consequently,
the absorption and circular dichroism spectra are not measured as
accurately as for longer wavelengths. To improve the accuracy of recorded
spectra below 200 nm, it would be necessary to use a shorter optical
path. We did not do so, but we believe that it has no bearing on the
conclusions drawn from the research described in this paper.Data processing and deconvolution calculations to obtain secondary
structure patterns from the CD spectra in the FUV range were performed
using four software packages: BeStSel,[27,28] SELCON3,[29] CDSSTR,[30] and CONTIN.[31,32] The latter three programs are included in the CDPro software package.[33]In the BeStSel program, five elements
of the secondary protein
structure are distinguished. These are helices, antiparallel β-sheets,
parallel β-sheets, turns, and others. In the SELCON, CDSSTR,
and CONTINUOUS programs, there are regular α-helices, distorted
α-helices, regular β-sheets, distorted β-sheets,
turns, and unordered. To simplify the comparative analysis, we reduced
the number of distinguishable elements to four: α-helices, β-sheets,
turns, and other (or unordered). The comparison is shown in Table , while the detailed
results are shown in Tables S1–S4 in the Supporting Information. The Supporting Information also outlines the procedure for moving from the
detailed results in Tables S1–S4 to the results shown in Table .
Table 3
Average Results of Analysis of Populations
of Different Elements of the Secondary α-Chymotrypsin Structure
in Four Mixing Experimentsa
secondary
structure type
EXP
program
α-helix
β-sheet
turn
unordered
A
SELCON3
10.7
29.3
19.8
36.6
CDSSTR
7.8
32.3
23.6
35.0
CONTIN
15.5
30.3
21.1
33.1
BeStSel
11.4
31.2
14.0
43.4
B
SELCON3
29.2
18.0
22.9
30.6
CDSSTR
33.6
17.1
21.1
28.3
CONTIN
29.6
16.9
23.0
30.4
BeStSel
26.9
15.5
14.5
43.0
C
SELCON3
29.2
18.1
23.0
30.5
CDSSTR
33.5
16.7
21.3
28.6
CONTIN
29.8
16.9
22.9
30.4
BeStSel
26.4
15.2
14.4
44.1
D
SELCON3
23.9
22.0
22.3
31.0
CDSSTR
26.1
21.2
21.9
30.6
CONTIN
25.3
19.9
23.1
31.6
BeStSel
21.1
18.8
14.8
45.4
Conditions: 20 μM CHA with
phosphate buffer (EXP A), 20 μM CHA with 80 mM SDS (EXP B),
mixture 20 μM CHA–20 mM SDS with 60 mM SDS (EXP C), and
mixture 20 μM CHA–6 mM SDS with 74 mM SDS (EXP D) obtained
from four programs indicated.
Conditions: 20 μM CHA with
phosphate buffer (EXP A), 20 μM CHA with 80 mM SDS (EXP B),
mixture 20 μM CHA–20 mM SDS with 60 mM SDS (EXP C), and
mixture 20 μM CHA–6 mM SDS with 74 mM SDS (EXP D) obtained
from four programs indicated.Hunt and Jirgensons[24] showed that in
the presence of a saturating amount of dodecyl sulfate, CHA adopts
a conformation with a higher helix content than the native protein.
The populations of the secondary structure elements, presented in Table , are in line with
these findings. Moreover, Table shows something new that seems interesting and, to
our knowledge, has not been described so far, namely, all of the employed
programs consistently show that the increase in the α-helical
population in the presence of 40 mM SDS depends on the manner in which
the concentration of the surfactant is brought to this value. This
observation is the most important result documented in our work.When a 20 μM solution of CHA containing the addition of 20
mM SDS is mixed with a solution containing 60 mM SDS, the populations
of the α-helices and β-sheets are the same as those observed
when a 20 μM solution of CHA is mixed with a solution of 80
mM SDS. The largest difference between the pairs of compared values
is 0.5%. However, when a 20 μM solution of CHA containing the
addition of 6 mM SDS is mixed with a solution of 74 mM SDS, the populations
of α-helices are smaller by 4.3–7.5% and β-sheets
are larger by 3.0–4.5% than in the two previous cases, although
the final concentration of the surfactant is the same. All four programs
give similar results in terms of differences in the populations of
the helices and sheets. However, there are differences between the
BeStSell program and the other three programs regarding changes in
the populations of twists and unstructured parts of the polypetide
chain. Nevertheless, it seems valid to conclude that CHA adopts different
secondary structures when the final 40 mM concentration of SDS is
determined in the two steps described above.
Near-UV Spectra
The results obtained in the analysis
of the secondary structure of CHA naturally induce analogous research
on the tertiary structure of this protein to be carried out. For this
purpose, we conducted similar tests to those described above in the
near-UV range.Figure shows spectra recorded in the near-UV range for 20 μM
CHA solutions without addition and with the addition of 40 mM SDS.
The solid lines show the spectra recorded immediately after preparing
the solutions. The spectra shown by dashed lines were recorded 200
min after the spectra represented by the corresponding solid lines.
Similarly, as in the far-UV case, the CD spectra obtained without
SDS and with its 40 mM concentration qualitatively agree with those
presented in the literature.[24] The most
interesting thing in the spectra shown in Figure are the differences in the range of 250–280
nm between the spectra of the solution obtained by mixing a 40 μM
CHA solution with the addition of 6 mM SDS with a 74 mM SDS solution
and the spectra of the other two solutions containing a final concentration
of 40 mM SDS. In this spectral range, the CD bands arise from the
aromatic amino acid phenylalanines and tyrosines as well as from disulfide
bonds.[20,24] In the 280–350 nm range, the spectra
of the solutions containing 40 mM SDS are the same no matter how this
final SDS concentration was reached. We conclude that the tertiary
structure of CHA in the vicinity of tryptophan residues does not depend
on the procedure of determining the final 40 mM concentration of this
surfactant. Figure shows the absorption spectra recorded in the near-UV range. As can
be seen, the absorption spectra of the solutions containing 40 mM
SDS are the same no matter how this concentration was achieved. On
the other hand, the absorption spectrum of a solution without SDS
is clearly different. These observations are analogous to those made
for the far-UV absorption spectra. Moreover, the absence of absorption
at 350 nm leads to the conclusion that there is no aggregation of
CHA in our solutions.[34,35]
Figure 3
Near-UV CD spectra of 20 μM solutions
of CHA obtained after
mixing the parent solutions specified in the legends.
Figure 4
Near-UV absorption spectra of 20 μM solutions of CHA obtained
after mixing the parent solutions specified in the legend.
Near-UV CD spectra of 20 μM solutions
of CHA obtained after
mixing the parent solutions specified in the legends.Near-UV absorption spectra of 20 μM solutions of CHA obtained
after mixing the parent solutions specified in the legend.Another interesting observation is that the spectra recorded
for
solutions with the final concentration of SDS of 40 mM, obtained in
two steps (40 μM CHA with 6 mM SDS:74 mM SDS and 40 μM
CHA with 20 mM SDS:60 mM SDS), recorded just after the mixing of the
appropriate parent solutions, almost perfectly overlap with the spectra
recorded 200 min later (Figure ). The reproducibility of the spectra is the same as in the
case of 40 μM CHA:80 mM SDS or diluting the protein solution
with the buffer, 40 μM CHA:buffer. This indicates that the tertiary
structures of α-chymotrypsin in these final solutions are stable
and that the small difference between the spectra visible in the range
250–270 nm in the bottom panel of Figure is meaningful.We can therefore conclude
that not only the secondary structure
but also the tertiary structure of CHA in a solution containing 40
mM SDS may depend on the procedure used to achieve this fnal concentration
of surfactant. Since the differences in the CD spectra are visible
around 260 nm, we can assume that the structural differences are present
in the vicinity of phenylalanine residues and possibly tyrosines and
disulfide bridges. In the spectral regions above 280 nm, where the
CD signals arise due to tryptophans, the spectra of CHA in the presence
of 40 mM SDS obtained by different mixings are the same.The
results shown in Figures and 3 are well reproducible
in independent experiments with new preparations of the stock solutions.
Thus, the secondary and tertiary structures of CHA in the presence
of the micellar concentration of SDS are determined not only by the
value of this concentration but also by the course of the mixing process.
Possible Significance of CHA Interactions with SDS Monomers
The observation of the differences discussed above requires that
the concentration of SDS added to the CHA solution in the first step
is relatively small. In our experiments, we used a SDS concentration
of 6 mM, which is a value slightly exceeding the CMC for SDS, amounting
to 4.61 ± 0.01 mM in our experimental conditions.[22] Mixing a parent solution, containing 6 mM SDS,
with a solution not containing the surfactant, done in the experiments
of the second type (see Table ), results in a solution with 3 mM SDS, thus below the CMC.
Besides having SDS concentrations either above or below the CMC, these
parent solutions and their mixing should be analyzed in terms of the
concentration of SDS micelles. On the basis of the literature data,
at experimental conditions similar to those of our experiments,[36,37] the mean aggregation number of SDS micelles is on the order of 70,
resulting in a concentration of micelles of roughly 20 μM. Thus,
it appears that CHA interactions with single SDS molecules can be
expected to play a significant role in solutions containing 6 mM surfactant.If the structural changes in a protein are caused by surfactant
concentrations both below and above the CMC, as noted by Takeda and
Moriyama,[38] this indicates that the protein
binds both individual surfactant molecules and micelles. The results
presented in Figure show that concentrations of SDS that are below or near the CMC (3–6
mM) induce changes in the secondary and tertiary structure of CHA.
These changes are different than the changes induced in the presence
of 40 mM SDS. Simultaneously, from the near-UV results, we can see
that the spectra recorded for solutions having the same concentration
ratio of CHA to SDS differ when the final concentrations are obtained
using different mixing procedures. Note that the spectra were recorded
1 h after preparation of the solutions. Therefore, it can be expected
that the molecular structures present in the solution are stable over
time. This points to the irreversibility of binding monomers of SDS
by CHA.
Figure 5
CD spectra in the far- (top) and near-UV (middle and bottom) recorded
for solutions obtained after mixing the parent solutions specified
in the legends. Spectra were recorded 1 h after mixing the parent
solutions.
CD spectra in the far- (top) and near-UV (middle and bottom) recorded
for solutions obtained after mixing the parent solutions specified
in the legends. Spectra were recorded 1 h after mixing the parent
solutions.The observed differences in the
spectra may seem surprising. For
the solutions whose spectra are shown in the middle and bottom of Figure , the final SDS concentrations
are the same and the ratios of CHA to SDS concentrations did not change
when these solutions were prepared. Moreover, in the preparation of
these solutions, the concentration of SDS was below or only slightly
above the CMC. Thus, in these solutions mainly interactions of CHA
molecules with single SDS molecules take place. It can be seen, however,
that the observed differences in the spectra seem to be consistent
with the capillary electrophoresis patterns of SDS–BSA complexes
at representative SDS concentrations observed by Takeda and co-workers,[3,19] provided that similar discontinuities in protein–SDS complex
formations occur also in the case of CHA. In Figure 10 of Takeda and
Moriyama,[3] we can see that at 3 mM SDS,
BSA exists in exclusively one form of a complex with the surfactant,
whereas at 6 mM SDS, there is a small contribution of this form but
another form of the complex is dominant. If the situation with CHA
is similar, the observed differences in the spectra should be expected.
This indicates that the structure of CHA (with a concentration of
20 or 40 μM, respectively) in the solution containing 6 mM SDS
is different than the structure of the protein (with a concentration
of 10 or 20 μM, correspondingly) in the solution containing
3 mM SDS. In addition, because the structure is stable, 2-fold dilution
of the first solution, 20(40) μM chymotrypsin with 6 mM SDS,
does not lead to the structure adopted by the protein when the corresponding
concentration of the protein is mixed in a 1:1 volume ratio with 6
mM SDS.In Figure we compare
spectra obtained for final concentrations of CHA 10 and 20 μM
in the presence of either 3 or 40 mM of SDS. In addition, we show
spectra obtained from the spectra recorded for a final concentration
of 10 μM CHA multiplied by a factor of 2. As can be seen, multiplication
of the spectrum recorded after mixing 20 μM CHA with 80 mM SDS
by 2 results in the spectrum almost perfectly fitting that recorded
after mixing 40 μM CHA with 80 mM SDS. Visible differences most
likely reflect the statistical noise accompanying the recording of
spectra. The overlap between the spectrum recorded at 20 μM
CHA concentration and the factor 2-multiplied spectrum recorded at
10 μM protein concentration is probably due to the 40 mM SDS
concentration being the saturating concentration for both protein
concentrations.
Figure 6
Comparison of near-UV CD recorded for solutions having
a final
concentration of 20 μM CHA with those having a final concentration
of CHA equal 10 μM in the presence of the same concentration
of SDS, either 40 or 3 mM. Details of mixings are shown in the corresponding
legends. Spectra for 10 μM CHA were multiplied by a factor of
2 and are shown in green.
Comparison of near-UV CD recorded for solutions having
a final
concentration of 20 μM CHA with those having a final concentration
of CHA equal 10 μM in the presence of the same concentration
of SDS, either 40 or 3 mM. Details of mixings are shown in the corresponding
legends. Spectra for 10 μM CHA were multiplied by a factor of
2 and are shown in green.A substantially different picture emerges for spectra recorded
for submicellar and near-critical concentrations of SDS. As can be
seen in the central panel of Figure , the spectrum obtained after mixing 20 μM CHA
with 6 mM SDS when multiplied by a factor of 2 superimposes quite
well in the range 280–350 nm on the spectrum obtained after
mixing 40 μM CHA with 6 mM SDS while being different for the
remaining wavelengths.On the other hand, in the bottom panel
of Figure , we compare
the spectrum of the solution
obtained after mixing 20 μM CHA containing the addition of 6
mM SDS with the buffer multiplied by a factor of 2 and the spectrum
of the solution obtained after mixing 40 μM CHA containing the
addition of 6 mM SDS with the buffer. These spectra only match for
wavelengths above 300 nm.The observations described above seem
consistent with the views
of Takeda and Moriyama[3] that there are
no free protein molecules in solutions containing proteins and SDS
regardless of the surfactant concentration and that the protein binding
processes for SDS are virtually irreversible.
Conclusions
The preparation of protein–surfactant solutions using the
two-step procedure described in our work has not been previously considered.
As we have shown using the example of CHA and SDS, such an approach
is able to provide new insights into protein–surfactant interactions
and the mechanism of surfactant-triggered structural transitions in
proteins. We hope that our work will encourage others to perform similar
studies on different systems using the vast arsenal of experimental
methods that are available for investigations of surfactant–protein
interactions.[5,15,39−41] An interesting case study would be ferrocytochrome c for which SDS-induced conformational transitions appear
to be reversible.[17]
Authors: Helena Ø Rasmussen; Jan J Enghild; Daniel E Otzen; Jan Skov Pedersen Journal: Biochim Biophys Acta Gen Subj Date: 2019-09-13 Impact factor: 3.770
Authors: Georg Krainer; Andreas Hartmann; Vadim Bogatyr; Janni Nielsen; Michael Schlierf; Daniel E Otzen Journal: Chem Sci Date: 2020-08-10 Impact factor: 9.825