Manik Das1, Somali Mukherjee2, Md Maidul Islam3, Indranil Choudhuri4, Nandan Bhattacharyya4, Bidhan Chandra Samanta5, Basudeb Dutta6, Tithi Maity1. 1. Department of Chemistry, Prabhat Kumar College, Contai, Purba Medinipur, Contai 721404, India. 2. School of Chemical Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, West Bengal, India. 3. Department of Chemistry, Aliah University, Kolkata 700064, India. 4. Department of Chemistry, Panskura Banamali College, Panskura 721152, India. 5. Department of Chemistry, Mugberia Gangadhar Mahavidyalaya, Purba Medinipur 721425, India. 6. Department of Chemical Science, IISER Kolkata, Mohanpur, Kolkata 741246, India.
Abstract
A new versatile azide-bridged polymeric Cu(II) complex, namely, [Cu(L)(μ1,3-N3)]∞ (1), was synthesized utilizing an N,N,O-donor piperidine-based Schiff base ligand (E)-4-bromo-2-((2-(-1-yl)imino)methyl)phenol (HL), obtained via the condensation reaction of 1-(2-aminoethyl) piperidine and 5-bromo salicylaldehyde. The single-crystal X-ray diffraction analysis reveals that complex 1 consists of an end-to-end azido-bridged polymeric network, which is further rationalized with the help of a density functional theory (DFT) study. After routine characterization with a range of physicochemical studies, complex 1 is exploited to evaluate its biomedical potential. Initially, theoretical inspection with the help of a molecular docking study indicated the ability of complex 1 to effectively bind with macromolecules such as DNA and the human serum albumin (HSA) protein. The theoretical aspect was further verified by adopting several spectroscopic techniques. The electronic absorption spectroscopic analysis indicates a remarkable binding efficiency of Complex 1 with both DNA and HSA. The notable fluorescence intensity reduction of the ethidium bromide (EtBr)-DNA adduct, 4',6-diamidino-2-phenylindole (DAPI)-DNA adduct, and HSA after the gradual addition of complex 1 authenticates its promising binding potential with the macromolecules. The retention of the canonical B form of DNA and α form of HSA during the association of complex 1 was confirmed by implementing a circular dichroism spectral study. The association ability of complex 1 with macromolecules further inspired us to inspect its impact on different cell lines such as HeLa (cervical cancer cell), PA1 (ovarian cancer cell), and HEK (normal cell). The dose-dependent and time-dependent in vitro 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay suggests an effective antiproliferative property of complex 1 with low toxicity toward the normal cell line. Finally, the anticancer activity of complex 1 toward carcinoma cell lines was analyzed by nuclear and cellular staining techniques, unveiling the cell death mechanism.
A new versatile azide-bridged polymeric Cu(II) complex, namely, [Cu(L)(μ1,3-N3)]∞ (1), was synthesized utilizing an N,N,O-donor piperidine-based Schiff base ligand (E)-4-bromo-2-((2-(-1-yl)imino)methyl)phenol (HL), obtained via the condensation reaction of 1-(2-aminoethyl) piperidine and 5-bromo salicylaldehyde. The single-crystal X-ray diffraction analysis reveals that complex 1 consists of an end-to-end azido-bridged polymeric network, which is further rationalized with the help of a density functional theory (DFT) study. After routine characterization with a range of physicochemical studies, complex 1 is exploited to evaluate its biomedical potential. Initially, theoretical inspection with the help of a molecular docking study indicated the ability of complex 1 to effectively bind with macromolecules such as DNA and the human serum albumin (HSA) protein. The theoretical aspect was further verified by adopting several spectroscopic techniques. The electronic absorption spectroscopic analysis indicates a remarkable binding efficiency of Complex 1 with both DNA and HSA. The notable fluorescence intensity reduction of the ethidium bromide (EtBr)-DNA adduct, 4',6-diamidino-2-phenylindole (DAPI)-DNA adduct, and HSA after the gradual addition of complex 1 authenticates its promising binding potential with the macromolecules. The retention of the canonical B form of DNA and α form of HSA during the association of complex 1 was confirmed by implementing a circular dichroism spectral study. The association ability of complex 1 with macromolecules further inspired us to inspect its impact on different cell lines such as HeLa (cervical cancer cell), PA1 (ovarian cancer cell), and HEK (normal cell). The dose-dependent and time-dependent in vitro 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay suggests an effective antiproliferative property of complex 1 with low toxicity toward the normal cell line. Finally, the anticancer activity of complex 1 toward carcinoma cell lines was analyzed by nuclear and cellular staining techniques, unveiling the cell death mechanism.
Metal complexes occupy
a leading place in the drug development
domain for the fabrication of new cancer therapeutics.[1−4] After the successful implementation of platinum-based anticancer
drugs, inorganic medicinal chemistry has introduced a new class of
therapeutic agents that are not fully accessible through organic chemistry.[5−8] However, the well-known drawbacks, such as low solubility, multifactorial
resistance, high cost, and toxicity, restrict their global usability
in chemotherapy.[9−11] In this context, among the series of bioessential
metals, copper has been exposed as one of the best alternatives to
platinum due to its important homeostatic and metabolic effects on
all types of cancers along with specific responses toward malignant
cells.[12−17] A large variety of copper complexes are already designed to be inspected
as anticancer agents showing potential cytotoxicity in several in vitro and in vivo experiments involving
a different mechanistic pathway.[18−21] In most of these cases, DNA is
found to be one of the main targets for cancer therapeutics, where
the DNA–drug interactions hinder DNA replication, preventing
the uncontrolled growth of malignant cells.[22−27] Consequently, to reduce the side effects of an anticancer drug molecule
and to increase its specificity, a definite approach has frequently
been implemented by the scientific community, where a fixed drug delivery
vehicle, such as an antibody, peptide, protein, etc., is linked to
the drug molecule. Among these, human serum albumin (HSA) is the most
plentiful circulating protein in the human blood plasma, which can
transport the drug molecule to the target location.[28] Drugs bound to HSA can reach target tissues without being
exposed to normal cells, thus diminishing its toxic effect on healthy
cells and tissues.[29−31] Thus, to implement a metal-based complex as an effective
anticancer agent, the primary need is to investigate its interaction
potential with DNA and HSA.Furthermore, the choice of the ligand
framework is of considerable
importance as it can regulate the distribution of the complex in biological
systems, in turn improving its efficiency.[29] Among several organic moieties, the N,N,O-donor Schiff bases have
gained special recognition as they bear enhanced flexibility to hold
the metal ions along with potential bioactivities, pharmacological
activities, etc. However, the surprising fact is that N,N,O-donor
Schiff bases derived from substituted piperidine are relatively less
explored with regard to their DNA and HSA binding efficacy and anticancer
properties. At the same time, different Schiff base–copper
complexes (Table S1) have also been designed
and exploited as efficient cancer therapeutics to date. Besides, the
successful introduction of metal–azide complexes as potential
anticancer agents without subsidiary toxicity to normal cell lines
has inspired chemists to use azide as a secondary anionic agent.[32,33] Interestingly, in this developing research area, Shiff base complexes
having a pendant or bridging azide ion hold a special position because
of their high applicability (Table S2).Addressing all of these points, in this study, we synthesized a
new Cu(II) complex (1) derived from a piperidine-based
Schiff base ligand, namely, (E)-4-bromo-2-((2-(-1-yl)imino)methyl)phenol
(HL). The azide anion was administered as a secondary
anionic ligand to produce Cu(II) complexes of versatile nuclearity.
The formation of polymeric complex 1 is well supported
by theoretical computations. To analyze the biomedical application,
the binding efficacy of complex 1 with ctDNA and HSA
was thoroughly tested by the electronic spectroscopic technique (binding
constant value 2.265 × 105 M–1).
The fluorometric titration of EtBr–DNA/DAPI–DNA adducts
and HSA by the incremental addition of complex 1 shows
an impressive fluorescence attenuation, with quenching constant values
on the order of ∼105, which suggests the efficient
binding efficacy of complex 1 with macromolecules. Circular
dichroism data show the retention of the configuration of DNA and
HSA after association with complex 1. The experimentally
obtained findings match well with the prediction obtained by the molecular
docking study. Finally, the anticancer activity of complex 1 was examined on HeLa (cervical cancer cell), PA1 (ovarian cancer
cell), and HEK (normal) cell lines. The LD50 values obtained
from an in vitro 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium
bromide (MTT) assay depict the effective anticancer property of complex 1 with low toxicity to the normal cell. In addition, the AO/PI
staining technique is adopted to gain insights into the nuclear morphological
changes and cell deformities of the aforementioned cell line after
treatment with complex 1 in a dose-dependent manner.
Results
and Discussion
Synthesis, IR, UV, and ESI-MS Analysis of
the Complexes
Complex 1 was synthesized by reacting
CuCl2 with a Schiff base ligand (HL), developed
by the association
of 2-amino ethyl piperidine and 5-bromo salicylaldehyde followed by
the addition of sodium azide (Scheme ).
Scheme 1
Synthesis of Ligand HL and Complex 1
In the first step, the Fourier
transform infrared (FT-IR) spectra
of complex 1 are collected, which provide a prefatory
idea regarding the existing bonds (Figure S1). In the case of complex 1, the band at 1636 cm–1 indicates the presence of the characteristic C=N
stretching of the imine bond. The sharp bands, centered at 1310–1410
cm–1, indicate the vibration frequency of the benzene
skeleton. The peaks at 2032 cm–1 and 2075 cm–1 provide authentic proof regarding the presence of
the bridging azide in complex 1. The UV–vis spectroscopic
study of complex 1 is performed, which shows that complex 1 exhibits one absorption band at 376 nm (€ = 11 428
M–1 cm–1), which arises as a result
of the CT transition. This band confirms the coordination of azomethine
nitrogen and phenolato oxygen with the metal center. The appearance
of an absorption band at 650 nm (€ = 465 M–1 cm–1) in the visible region is attributed to the
d–d transition (Figure S2).The electrospray ionization mass spectra (positive mode, m/z up to 1200 amu) of complex 1 are recorded in methanolic solution (Figure S3). Complex 1 exhibits two major peaks at m/z = 452.0020 amu and m/z = 373.9880 amu for the species [C14H18BrCuKN5O]+ and [C14 H18BrCuN2O]+, respectively (calculated m/z 452.9622 amu and 373.9786 amu, respectively).
Crystal Structure Description
The reaction of CuCl2 with HL in the presence of NaN3 yields
an end-to-end azide-bridged polymeric Cu(II) complex (complex 1) having the structural formula [Cu(L)(μ1,3-N3)]∞. The complex crystallizes in
a non-centrosymmetric orthorhombic P212121 space group, with the asymmetric unit
comprising one deprotonated L ligand, one Cu(II) atom, and one μ1,3-azido anion. The absolute configuration of the structural
model is clearly defined by the Flack parameter of 0.017(7).[34]The Cu(II) center adopts a distorted square
pyramidal geometry (τ ∼ 0.25),[35] where the four basal positions are occupied by the N(imine), N(amine),
O(phenolato) donor atoms of the chelating L ligand, and N3 atom of
an azide anion, whereas the nitrogen N6 of a symmetry-related bridging
azide residue is located at the axial position. The apical Cu–N6
bond distance (2.434(4)Å) is significantly longer with respect
to the other three Cu–N bond lengths, which are the range of
1.956(3)–2.078(3) Å, in good agreement with values found
in the literature.[29,30] On the other hand, the Cu–O1
bond length is shorter (1.915(3) Å). The Cu center is displaced
from the mean basal plane by 0.16 Å toward the apical azide nitrogen.
The N3–Cu–N6, N3–Cu–N2, and N1–Cu–O1
bond angles of 106.03(16), 160.95(16), and 176.37(13)°, respectively,
are indicative of the distortions from the ideal square pyramidal
geometry (Figure ).
Figure 1
(a) ORTEP
view of complex 1 with an indication of
the metal coordination geometry. (b, c) Polyhedral view around the
metal center with a few bond parameters.
(a) ORTEP
view of complex 1 with an indication of
the metal coordination geometry. (b, c) Polyhedral view around the
metal center with a few bond parameters.The structural analysis disclosed the formation of one-dimensional
(1D) homochiral polymeric chains wrapped around the screw 21 axis of the right-handed P-helicity, where the chelate conformation
at N1/N2 five-membered rings is λ. The chain is composed of
copper complexes connected by an end-to-end bridging azide (Figure a), with an intermetallic
Cu–Cu distance of 6.053 Å. These homochiral chains are
connected via C–H···N hydrogen
bonds (Figure b) and,
additionally, by CH···π interactions to form
a two-dimensional network.
Figure 2
(a) 1D zigzag polymeric chain of complex 1 developed
along the b axis. (b) Two-dimensional (2D) structure
of polymeric chains connected by CH···N3 hydrogen bonds,
viewed along the crystallographic c axis (only H
atoms involved in the interactions are indicated).
(a) 1D zigzag polymeric chain of complex 1 developed
along the b axis. (b) Two-dimensional (2D) structure
of polymeric chains connected by CH···N3 hydrogen bonds,
viewed along the crystallographic c axis (only H
atoms involved in the interactions are indicated).Notably, in the case of the complex with a Schiff base lacking
bromine, a similar homochiral polymeric chain was obtained, but it
was less tightly bound because of an apical Cu–N(azide) distance
of ca. 2.8 Å.[36] The hydrogen-bonding
parameters and other required bond parameters of complex 1 are tabulated in Tables S3–S5.
DFT Computation
To provide theoretical support to the
1D polymer formation of complex 1, a DFT study was also
performed. The molecular structure obtained from the DFT study clearly
shows that the single coordination unit, composed of the N,O-donor-deprotonated
ligand and the metal ion, polymerizes through an azido bridge (Figure S4). The TD-DFT calculation is investigated
for the validation of the experimental absorption band in the UV–vis
spectra. Details of the computational data analysis are discussed
in the Supporting Information.
DNA-Binding
Studies
In the previous section, the synthesis
along with the structural description of complex 1 was
described. Then, to examine the biomedical application of complex 1, its DNA-binding efficacy was first investigated thoroughly.
Before commencing the work (binding study), it is essential to check
the stability of the complex in the working buffer medium. To confirm
the stability of the complex in the buffer medium employed, the absorbance
of complex 1 as a function of time at a fixed pH was
recorded; magnificently, the absorbance of the complex remained unaltered,
assuring the stability of the complex in the experimental medium at
pH 7.4 (Figure S5). Electronic spectral
titration is the most common and important tool to understand the
binding efficacy of small molecules with DNA. In this study, actually,
the alteration of the absorbance of the studied complex was noted
after the incremental addition of ctDNA to it. At the same time, the
association constant between complex 1 and the macromolecule
was measured; see the Experimental Section. Figure displays
the absorbance change of complex 1 after the incremental
addition of DNA (10–80 μM) to it. Complex 1 exhibits the absorption maxima at 360 nm, which continuously reduces
with a 5 nm red shift after the gradual addition of ctDNA to it.
Figure 3
(a) Changes
in the absorption maxima upon the gradual addition
of ctDNA (10–80 μM) to complex 1. (b) Linear
fitting to determine the binding constant.
(a) Changes
in the absorption maxima upon the gradual addition
of ctDNA (10–80 μM) to complex 1. (b) Linear
fitting to determine the binding constant.The appearance of an isosbestic point on the titration graph at
382 nm indicates the presence of a strong reversible equilibrium.[37,38] The considerably higher binding constant value of 2.265 × 105 M–1 suggests the better binding capability
of complex 1 with ctDNA. The electronic spectral titration
of DNA/HL and the DNA/HL–Cu(II)
complex (without the azide) was been performed. The titration results
are pictographically represented in Figure S6. The titration profile as well as the low binding constant values
[1.07 × 103 M–1 and 1.12 ×
103 M–1 for HL and HL–Cu(II), respectively] clearly unveil the fact that
complex 1 is more susceptible to DNA bonding than precursor
compounds such as HL and the HL–Cu(II)
complex. The presence of a bulky Br group and a perpendicular azo
group in complex 1 favor a partial intercalation along
with the groove-binding mode, which is already predicted by the molecular
docking study (discussed later).
Ethidium Bromide (EB) and
4′,6-Diamidino-2-phenylindole
(DAPI) Displacement Study
Due to the absence of the photoluminescence
property of DNA as well as complex 1, initially, DNA
identification was performed by associating it with a fluorophore,
and the alteration of the fluorescence intensity of the DNA–fluorophore
adduct was recorded after the incremental addition of the studied
complex.In the present study, first, ctDNA–EtBr (intercalator
binder) (20 μM + 5 μM) and ctDNA–DAPI (groove binder)
(20 μM + 5 μM) adducts were formed, and impressively,
in the presence of ctDNA, the emission intensity of EtBr and DAPI
increases by up to 20-fold due to the strong intercalation and groove
binding, respectively.[39−42] In the second step, the emission intensity changes of EtBr–ctDNA/DAPI–ctDNA
adducts were recorded after a step-by-step separate addition of complex 1 (10–120 μM) to the adducts. Interestingly,
in every case, a continuous decrease in the emission intensity was
visualized after the incremental addition of complex 1 to the adduct (Figure ). This quenching event can be attributed to the replacement of EtBr
or DAPI from the DNA–EtBr/DNA–DAPI moiety with the enhancement
of the free EtBr or DAPI molecule concentrations. However, the decrease
in the emission intensity can only be reconciled by the efficient
interaction potential of complex 1 with DNA, which actually
reduces the number of associating parts of DNA available for DAPI
or EtBr. The quenching constant was measured by the Stern–Volmer
equation as followswhere F0 and F represent the emission
intensity in the absence and presence
of the quencher, [Q] stands for the concentration of the added quencher,
and KSV refers to the quenching constant.[43] From the linear fitting of the curve, the KSV values were found to be 2.96 × 104 and 3.14 × 104 M–1 for
EtBr and DAPI displacement, respectively, suggesting a groove-binding
mode along with partial intercalation binding during the association
of complex 1 with DNA.
Figure 4
Fluorescence intensity changes of (a)
EB–DNA and (b) DAPI–DNAs
domain after the incremental addition of complex 1 (10–120
μM). Inset: fluorescence intensity change as a function of the
concentration of complex 1 to measure the quenching constant
(S–V plot).
Fluorescence intensity changes of (a)
EB–DNA and (b) DAPI–DNAs
domain after the incremental addition of complex 1 (10–120
μM). Inset: fluorescence intensity change as a function of the
concentration of complex 1 to measure the quenching constant
(S–V plot).
Viscosity Measurement Study
The viscosity study is
a vital test to obtain typical information regarding the binding mode
of the complex to DNA. Hence, before arriving at a conclusion regarding
the binding mode of the complex–DNA interaction, the viscosity
study should be carried out. Generally, for intercalation binding,
the insertion of the compound between the base pair increases the
length of DNA, which leads to an enhancement of the viscosity of the
bare macromolecule.[44] On the other hand,
in the case of groove or other nonclassical modes of binding, the
twisting or bending of the double helix leads to a slight reduction
of the length of the DNA, as a result of which a slight decrease in
the viscosity is observed.[45]Figure S7 clearly displays the relative enhancement
of viscosity of the DNA upon incubation with complex 1. Another notable fact is that after the incremental addition of
the complex to DNA, the viscosities of the ctDNA–complex 1 adducts increase following a linear pathway, and the pattern
of growth follows that observed during DNA–EtBr conjugation.
However, the position of the straight line for the complex–DNA
association is at a lower region compared with that of the EtBr–DNA
conjugation. This observation suggests that the insertion of complex 1 between the ctDNA base pair is not fully comparable to that
of EtBr, a strong intercalator binder. Hence, it can be concluded
that the studied complex has the capability to interact with DNA via a partial intercalative mode.
HSA Binding Studies
Electronic
Spectral Titration
The previous section
explains well the better association power of complex 1 toward ctDNA, and this investigation is the prime step toward developing
a potential anticancer drug. In the next step, we examined the effectiveness
of the developed complex toward protein binding. Human serum albumin
(HSA) is the most copious protein in the blood plasma, which can play
an important role as a drug delivery vehicle carrying the drug molecule
to the target location. In the protein-binding study, initially, the
UV–vis spectral titration was carried out. In this study, actually,
after the incremental addition of complex 1 to HSA (5
μM), the changes in the absorption were recorded. HSA has a
strong absorption at 280 nm, and a continuous enhancement of the absorbance
of HSA was visualized after the gradual addition of complex 1 to it (Figure ). The reason behind the enhancement of absorbance is the formation
of the ground-state complex with HSA. To avoid the inner filter effect,
we modified the spectra using the following equationwhere I stands for the corrected
intensity and Iobs represents the observed
background-subtracted fluorescence intensity. Aex and Aem correspond to the respective
absorbance values measured at excitation and emission wavelengths,
respectively.
Figure 5
Changes in the absorbance of 5 μM HSA with increasing
concentrations
of complex 1 at 298 K.
Changes in the absorbance of 5 μM HSA with increasing
concentrations
of complex 1 at 298 K.
Fluorescence-Quenching Studies
HSA shows an intrinsic
luminescence property, mainly due to the presence of two chromophores,
namely, tryptophan (Trp) and tyrosine (Tyr). After UV absorption titration,
the interaction efficacy of complex 1 with HSA was further
studied via fluorometric titration. After the gradual
addition of complex 1 to HSA, a drastic reduction of
the emission intensity of HSA (centered at 340 nm), with a 10 nm spectral
shift, was noticed (Figure ).
Figure 6
(a) Sharp decrease in the HSA (20 μM) fluorescence intensity
after the continuous addition of complex 1 (20–160
μM). (b) Changes in the fluorescence intensity as a function
of the complex concentration to determine the quenching constant.
(c) Double-log plot and (d) modified Stern–Volmer plot of HSA
with varying concentrations of complex 1.
(a) Sharp decrease in the HSA (20 μM) fluorescence intensity
after the continuous addition of complex 1 (20–160
μM). (b) Changes in the fluorescence intensity as a function
of the complex concentration to determine the quenching constant.
(c) Double-log plot and (d) modified Stern–Volmer plot of HSA
with varying concentrations of complex 1.We implemented the Stern–Volmer eq to understand the actual quenching mechanism.
The double-log plot (Figure c) was used to measure the binding constant, and the nature
of binding was elucidated by implementing the modified Stern–Volmer
plot (Figure d)In the above equation, K represents the binding
constant of the compound with HSA and n denotes the number of binding
sites.Here, f is the
fraction accessible
for the protein fluorescence and KQ stands
for the apparent quenching constant. All of the binding parameters
are summarized in Table . The value of kq (Table ) is observed to be on the order of 1013, which is found to be higher (>1012) than
the
threshold of kq for a typical biomolecular
quenching process.[46,47] During the host–guest
interaction study, for a diffusion-controlled process followed by
a collision (dynamic quenching), the maximum threshold value will
be on the order of 1010. Here, Kq is measured from the relation Kq = KQ/⟨τ0⟩. In the
case of static quenching, as ⟨τ0⟩ is
controlled by the excited-state property of both the fluorophore and
the quencher, Kq should be higher than
1010.[46] In the present study,
the value of Kq was observed to be higher
than the maximum threshold value, which is a signature of a static
quenching phenomenon. The F0/Fvs [complex 1] plot has a straight-line
fitting (Figure b).
Further, to estimate the binding constant, we used the double-log
equation eq (Figure c), and at the same
time, the prediction regarding the nature of binding (static or dynamic)
was obtained from the modified Stern–Volmer plot (Figure d).
Table 1
Binding Parameters of the HSA-Complex 1 Interaction
sample
Kb (L mol– 1)
KSV (L mol– 1)
kq (L mol– 1 s– 1)
KQ (L mol– 1)
n
complex 1
3.28 × 104
2.66 × 104
4.46 × 1012
3.34 × 104
0.97
Circular Dichroism (CD) Spectral Study
The CD study
is a vital tool to assess whether the macromolecules undergo any secondary
conformational changes during the interaction with small molecules.
In this titration study, the CD spectral changes of bare DNA/HSA in
the presence of complex 1 were recorded. Figure clearly depicts a summary of both the CD
titration results. The figure shows that the CD spectrum of free DNA
represents its canonical b form having a positive lobe at 280 nm and
a negative lobe at 248 nm. Interestingly, after the addition of complex
1 to the DNA, very little change in the positive lobe of free DNA
was visualized, indicating the retention of the configuration of DNA
during the interaction with the studied complex. If the complex is
associated with DNA via groove binding, one additional
hump should generally appear above the 300 nm region, and here, we
made the same observation, indicating the groove-binding nature of
the complex toward DNA.
Figure 7
CD spectral changes in (a) ctDNA and (b) HSA
in the presence and
absence of complex 1.
CD spectral changes in (a) ctDNA and (b) HSA
in the presence and
absence of complex 1.Further, Figure b
shows the CD spectral changes in bare HSA in the presence of complex 1. Free HSA shows two negative peaks at 209 nm (π →
π* transition) and 220 nm (n → π* transition),
representing the α-helical structure of HSA. After the introduction
of the developed complex to HSA, the alteration of the CD spectra
was visualized with a slight reduction of its band intensity. The
titration profiles were analyzed by utilizing the CD Pro software
package. The native HSA α-helix content of 58.5% was found to
be almost constant (57.5%) in the presence of 30 μM complex 1. The observation made from the CD spectral titration profile
indicates that complex 1 is unable to modify the conformation
of HSA. As the overall style of the curve of HSA before and after
the addition of complex 1 does not change, one can easily
conclude that the α-helix remains dominant after the association
of HSA with the studied complex.
Figure 8
(a) Complex 1 bound to DNA via partial
intercalation. (b) Two-dimensional image of the binding of the ligand
with DNA. Blue spots indicate the portion exposed to the solvent.
(a) Complex 1 bound to DNA via partial
intercalation. (b) Two-dimensional image of the binding of the ligand
with DNA. Blue spots indicate the portion exposed to the solvent.
Lifetime Decay
To obtain additional
proof against the
static quenching of HSA in the presence of the quencher complex 1, the lifetime decay measurement study was performed. The
characteristic decay profiles and decay parameters for HSA during
association with complex 1 are shown in Figure S8 and Table S9, respectively.
From the data, it is noticed that both HSA and the HSA–complex
adduct show a biexponential decay pattern. The time constant of HSA
was calculated to be 1.15 ns, and after the introduction of complex 1 to it, the lifetime of HSA slightly changed from 1.15 ns
to 1.23 ns, providing solid proof against the static quenching nature
of HSA in the presence of the quencher complex 1. The
observed χ2 values in every case for the complex
were also found to be well-fitted in the acceptable range.
Molecular
Docking Study
In fact, before the experimental
study, molecular docking was carried out to derive a preliminary idea
regarding the binding efficacy of the studied complex with macromolecules,
and a range of biophysical studies was performed to obtain experimental
validation of the association potential of the complex with macromolecules
such as DNA/HSA. Previous reports indicate that 1D azide polymers
generally exist as monomeric units in the solution phase. Thus, during
the docking study, the mononuclear structure of complex 1 was used, and impressively, the mass spectral data also yield good
support for the existence of a monomeric unit in the solution. In
this section, a detailed discussion of the docking study is provided,
along with a good match between the experimental and theoretical results.
Herein, MOE 2009 software is used for the docking study.[48] The molecular docking study of DNA clearly unveils
that the ligand (metal complex) approaches the major groove of the
DNA, and its aromatic planar portion partially intercalates into DNA
base pairs (Figure a).Generally, a planar ligand can completely intercalate into
the base pair of nucleic acids,[49,50] but several pieces
of evidence also show partial intercalation visualized due to partial
planarity. Here, the studied metal complex lacks planarity due to
the presence of a twisted bicyclic piperidine derivative ring. Besides,
a triazo group (−N=N=N−) that is perpendicularly
attached to copper(II) is also responsible for the prevention of full
intercalation. However, the perpendicularly present triazo group (−N=N=N−)
plays a significant role during association with DNA by the formation
of hydrogen bonds, which gives the metal complex–DNA adduct
extra stability. The distance between the base pairs away from the
intercalation site is 3.95 Å, whereas this distance increased
to 3.73 Å due to partial intercalation of the metal complex.
The obtained binding free energy is in the range of −7.98 to
−9.12 kcal/mol (binding corresponding to the lowest rmsd is
−7.98 kcal/mol), which is in good agreement with that of other
studies, related to the DNA-binding efficacy of the metal complex.The docking study with HSA (Figure ) reveals that the ligand (metal complex) is completely
able to penetrate into the binding site. This study also revealed
that arginine (Arg 257) stabilizes the complex by the formation of
a positively charged pi interaction with the aromatic ring present
in the ligand (metal complex). The fluorescence property of HSA is
mainly due to the presence of the aromatic ring-like tyrosine, and
the distance between the amino acid and the acceptor ligand is responsible
for the fluorescence energy transfer from the amino acid to the ligand.
Here, the distance between Tyr150 and the ligand is 4.32 Å, and
this distance is suitable for energy transfer (fluorescence quenching
in Figure ). The obtained
binding energy (−7.94 kcal/mol) is in good agreement with that
of the experimental study.[51,52]
Figure 9
(a) Ligand bound to HSA.
(b) Two-dimensional image of the ligand
bound to HSA, where the dotted line indicates the contour graph of
the engulfed portion.
(a) Ligand bound to HSA.
(b) Two-dimensional image of the ligand
bound to HSA, where the dotted line indicates the contour graph of
the engulfed portion.
In Vitro Cytotoxicity Study
After rigorous inspection
regarding the interaction efficacy of complex 1 with
the ctDNA/HSA protein, finally, the cytotoxicity assay was performed
for its fruitful biomedical implementations. For this purpose, the
MTT assay was carried out using two cancer cell lines, namely, human
cervical carcinoma (HeLa) and human ovarian carcinoma (PA1) cell lines,
and one normal cell line (HEK 293). The dose-dependent cell viability
results are shown in Figure . The LD50 values were calculated after 24 and
48 h of incubation of all three cell lines with different doses of
complex 1 at 37 °C. During the entire MTT assay,
cisplatin was used as the positive control against the HeLa cell line.
Figure 10
Dose-dependent
suppression of the cell viability of HeLa, PA1,
and HEK cell lines after (a) 24 h and (b) 48 h of incubation for complex 1.
Dose-dependent
suppression of the cell viability of HeLa, PA1,
and HEK cell lines after (a) 24 h and (b) 48 h of incubation for complex 1.Low LD50 values of
complex 1 for HeLa and
PA1 cell lines yield strong confirmation of its powerful antiproliferative
property with low toxicity toward the normal cell (high LD50 value obtained for normal HEK cells). For a better understanding,
the usefulness of the developed complex 1 was compared
with those of several previously reported Cu(II) complexes with respect
to effective DNA/protein binding and anticancer activity. A summary
of the results of the previously reported Cu(II) complexes is presented
in Table S1. The table clearly shows that
most of the Cu(II) complexes exhibit effective anticancer properties,
which are not only comparable to those of cisplatin but also somehow
yield better results. However, in the majority of the cases, protein-binding
studies were not reported simultaneously with DNA-binding and anticancer
studies. The effects of the previously reported complexes on normal
cell lines are also not reported in several cases.In this present
investigation, the antiproliferative property of
complex 1 is not only comparable to the effectivity of
cisplatin, but it also shows the absence of toxic effects on the normal
cell line. In addition, the cytotoxicity of complex 1 toward the two cancer cell lines was found to be much higher than
that toward the precursor molecules, i.e., CuCl2 and the ligand. Interestingly, the IC50 value
of the HL–Cu(II)-only complex (in the absence
of azide) is very high in comparison with that of complex 1, and this is displayed in Table . This observation clearly unveils the utility of the
azide moiety present in complex 1 to exhibit better anticancer
properties compared with the HL–Cu(II)-only complex.
All of the data given in Table display the selective and specific use of complex 1 as a successful anticancer agent.
Table 2
Measured LD50 Values in
Different Cell Lines
compounds
under investigation
cell line
LD50_24h (mean ± SD, n = 3)
LD50_48h (mean ± SD, n = 3)
complex 1
HEK-293
68.68 ± 5.33
40.80 ± 10.90
complex 1
HeLa
28.46 ± 1.26
7.86 ± 0.57
complex 1
PA1
20.28 ± 0.35
15.23 ± 1.38
CuCl2
HeLa
>100
HL
HeLa
>100
HL-Cu(II) complex
HeLa
>100
Apoptosis Induced by Complex 1 in a Carcinoma Cell
Line
Finally, to understand the cell death mechanism and
to visualize the notable changes within the cell, the nuclear staining
technique using different dyes is an unparalleled tool. In this study,
in fact, the nuclear and cellular morphological changes of HeLa cells
after treatment with complex 1 for 24 and 48 h of incubation
with different doses were observed after staining with AO/PI. Figure depicts the nuclear
morphological changes after 24 and 48 h of treatment of the cancer
cells with different concentrations of complex 1 (12.5,
50 μM).
Figure 11
HeLa cells stained with AO/PI after treatment with complex 1 for 24 and 48 h.
HeLa cells stained with AO/PI after treatment with complex 1 for 24 and 48 h.In controls, cells exhibit green fluorescence showing the unaltered
morphology with highly organized nuclei, but with an increasing concentration
of the complex, the cell morphology changes and, at the same time,
the green fluorescence turns to orange and then red, indicating apoptotic
cells with cell shrinkage.[53,54] Thus, after analyzing
the results of the staining experiment with the AO/PI strainer, one
can conclude that complex 1 triggers apoptosis within
the Hela cell line, causing cellular death.
Conclusions
The present work describes the synthesis and thorough identification
of a new 1D polymeric Cu(II) complex (1), derived from
a piperidine-based Schiff base ligand HL and anionic
azide residue. The single-crystal data analysis as well as density
functional theory study show that complex 1 consists
of a 1D polymeric structure via end-to-end azide
bridging. As a preliminary step of the anticancer drug development,
complex 1 is inspected to determine its interaction potential
with ctDNA and HSA protein. For this purpose, initially, a theoretical
study by means of molecular docking was performed, and the results
stipulate the binding efficacy of the developed complex toward macromolecules.
This theoretical assumption is experimentally validated by implementing
a range of biophysical studies. Analyses of steady-state spectral
data as well as the displacement assay confirm the partial intercalation
mode of complex 1 along with groove-binding toward DNA,
and CD spectral titration studies also point out that, during association
of the complex with DNA/HSA, no secondary structural changes occur
in the macromolecules. These experimental and theoretical studies
indicate that the complex can bind with the macromolecules in an effective
manner and that the azide group as well as the planar ligand part
of the complex play a vital role in the magnificent binding efficacy
of the complex. Finally, using the MTT assay, the anticancer activity
of complex 1 is analyzed on HeLa and PA1 cancer cell
lines as well as on a normal HEK cell line in both dose-dependent
and time-dependent manners. The LD50 values recommend complex 1 as a potential anticancer agent with low toxicity to the
normal cell. To obtain a preliminary idea regarding the cell-killing
mechanism as well as to visualize the morphological changes in HeLa
cells after treatment with complex 1, the AO/PI staining
technique was applied, which indicates the occurrence of apoptosis,
leading to cancer cell death. Finally, in brief, complex 1 can be effectively implemented for anticancer therapy.
Experimental
Section
Materials and Methods
All of the reagents and solvents
used in this synthesis were commercially available and used without
further purifications. 5-Bromo salicylaldehyde, 1-(2-aminoethyl piperidine),
ctDNA, HSA, and ethidium bromide (EB) were procured from Sigma Aldrich
Chemicals. CuCl2 and sodium azide (NaN3) were
purchased from Merck. All interaction studies were performed in citrate–phosphate
(CP) buffer of 10 mM [Na+] at pH 7.40 containing 0.5 mM
Na2HPO4. Experimental observations (C, H, and
N) were recorded using a PerkinElmer 2400ll elemental analyzer. An
ATR mode Bruker Tensor-27 was used to collect FTIR data. Electronic
absorption spectral data were collected using a PerkinElmer UV–Vis
Lambda 365 spectrophotometer. All of the fluorometric experiments
were conducted using a PerkinElmer fluorescence spectrometer FL6500.
Synthetic Procedures
Synthesis of Ligand HL
A volume
of 0.1 mL (0.7 mmol)
of 1-(2-aminoethyl) piperidine was added to a methanolic solution
containing 0.140 g (0.7 mmol) of 5-bromo-salicylaldehyde, and after
complete addition of the reagents (1:1), the resultant solution was
stirred for 3 h.[55] A yellow color developed
instantly. The clear yellow-colored solution was directly used for
complex preparation.
Synthesis of [Cu(L)(μ1,3-N3)]∞ (1)
Complex 1 was
developed by the reaction of an equimolar mixture of the ligand and
the metal salt. A methanolic solution of CuCl2 (0.11 g,
0.7 mmol) was added in situ to the ligand (HL) solution
under stirring. After a few minutes, 1.4 mmol of sodium azide was
added to it. Then, the resultant solution was stirred for an additional
3 h. After this, the solution was allowed to settle and then filtered.
Then, the solution was kept for slow evaporation. After 3 days, small
green-colored rectangular crystals were obtained (yield 75%), which
were collected and used for further studies. Anal. calcd: for C14H18BrCuN5O (Mw 415.78): C 40.41, H
4.32, N 16.83; found: C 40.36, H 4.23, N 16.62. FT-IR data (KBr pellet):
ν(C=N) 1636 cm–1, ν(N=N)
2075 cm–1, 2032 cm–1ν(skeletal
vibration) 1410 cm–1,1310 cm–1. UV–vis: 376 nm (CT transition), 650 nm (d–d transition).Caution! Azides are highly explosive and should
be handled with proper care.
X-ray Crystallography
Single-crystal X-ray diffraction
data for complex 1 were collected at room temperature
on a Bruker Apex II diffractometer equipped with Mo Kα radiation
(λ = 0.71073 Å) and CCD. Cell refinement, data collection,
and reduction of the data sets were carried out using the Bruker APEX
II and SAINT packages. The appropriate absorption correction was applied
with SADABS program.[56] The structure was
solved by direct methods[57] and refined
using least-squares methods based on F2 with SHELXL program.[58] In complex 1, hydrogen atoms were included at calculated positions and
non-hydrogen atoms were refined anisotropically. Crystallographic
data and refinement parameters of complex 1 are provided
in Table .
Table 3
Crystallographic Data and Refinement
Parameters of Complex 1
1
CCDC Number
2045505
empirical formula
C14H18BrCuN5O
fw
415.78
crystal size (mm)
0.30 × 0.24 × 0.15
crystal system
orthorhombic
space group
P212121
a (Å)
6.5335(3)
b (Å)
9.5645(5)
c (Å)
26.1697(12)
α (deg)
90
β (deg)
90°
γ (deg)
90
V (Å3)
1635.34(14)
Dcalcd (g/cm3)
1.689
Z
4
F(000)
836
μ (mm–1)
3.787
Mo Kα radiation
λ = 0.71073 Å
T (K)
296(2)
Rint
0.0642
range of h, k, l
–8/8, −12/12,
−33/33
θmin/max (deg)
2.267/27.162
reflections collected/unique/observed [I > 2σ(I)]
25433/ 3611/3230
data/restraints/parameters
3611/0/199
GOF on F2
1.060
final
R1 = 0.0316
Rindices[I > 2σ(I)]
wR2 = 0.0751
Rindices(all data)
R1 = 0.0387
wR2 = 0.0782
absolute structure parameter
0.017(7)
residuals (e/Å3)
0.519, −0.447
The CIF file of complex 1 has
been deposited at the
Cambridge Crystallographic Data Centre (CCDC number 2045505). Copies
of the data can be obtained, free of charge, on application to the
CCDC, 12 Union Road, Cambridge, CB2 1EZ U.K. [Fax: 44 (1233) 336 033;
e-mail: deposit@ccdc.cam.ac.uk].
Theoretical
Calculation Method
All of the calculations
were performed at the B3LYP[59,60] level using Gaussian
09 software[61] package. The basis set LanL2DZ
was allotted for all of the elements, including metal ions present
in the molecule. The ground-state stationary points were entirely
optimized at the B3LYP/LanL2DZ level.[62] The electronic excitations based on optimized geometries were calculated
using the time-dependent density functional theory (TDDFT) formalism.
The Gauss sum[63] was carried out to obtain
the theoretical electronic spectra and analyze the influence of the
molecular orbital of different structural components in the system.
Solution Chemistry
The stability of the complexes in
the working buffer solution was confirmed using a UV–vis spectrophotometer.
The dimethyl sulfoxide (DMSO) stock solution of complex 1 was added to the CP buffer (pH 7.4), and spectral data were recorded
at fixed time gaps.
DNA/Protein Interaction Studies
The DNA and HSA stock
solutions were prepared by the dilution of ctDNA into a citrate–phosphate
(CP) buffer of 10 mM containing 0.5 mM Na2HPO4. Utilizing the molar extinction coefficient (ε) of 6600 M–1 cm–1, the concentration of DNA
was measured spectrophotometrically. During concentration determination
in this study, no deviation from the Beer’s law was observed.A fixed concentration of HSA was prepared using the molar extinction
coefficient (ε) of 37 500 M–1 cm–1.The following biophysical experiments were
implemented to examine
the binding efficacy of DNA/protein with complex 1.
Determination of the Binding Mechanism by a Displacement Assay
In this study, the fluorescence intensities were recorded after
the incremental addition of the complex solution step by step into
the ctDNA–EtBr/DAPI domain. HSA is a highly fluorescence-active
protein, and the fluorescence titration of HSA was monitored within
250–450 nm upon excitation at 240 nm. Micromolar (μM)
amounts of stock solutions of complex 1 were added continuously
into the adduct, and fluorescence intensity changes were recorded.
Circular Dichroism Spectral Study
For the circular
dichroism (CD) spectral study, the Jasco J815 model unit (Jasco International
Co. Ltd. Hachioji, Japan) was used. In the CD spectral titration,
after the addition of increasing concentrations of complex 1 to a fixed concentration of ctDNA/HSA (30μM), alterations
of the CD spectrum of free DNA/HSA were recorded. Using the equation
[θ] = 100 × θ/(C × l), the molar ellipticity values [θ] were measured,
where θ is the observed ellipticity in milli degrees, C stands for the concentration in mol/L, and l represents the cell path length of the cuvette in cm. The molar
ellipticity [θ] (deg cm2/dmol) values are represented
in terms of base pairs within the region of 200–400 nm.[64]
Time-Resolved Studies
Using time-correlated
single-photon
counting (TCSPC) (λex = 280 nm) with a picosecond
diode, IBH-NanoLED source N-295, and an fwhm of ∼930 ps, fluorescence
lifetimes were measured. The data were deconvoluted in DAS-6 software
and fitted according to the residuals of fitting function and χ2 criteria (neglecting χ2 value beyond the
range of 0.99 < χ2 < 1.10) using the multiexponential
equation given below:α denotes the amplitude of the ith lifetime associated
with the ith lifetime τ. The average lifetime ⟨τ⟩ can be calculated
as follows:
Molecular
Docking Studies for DNA Binding and HSA Protein Binding
All
docking studies were performed using MOE 2009 software as mentioned
earlier.[65−67] As the actual sequence of ctDNA is unavailable, a
DNA crystal (6elb.pdb) was downloaded for further study as a model.
For docking with HSA, the crystal structure of the HSA–warfarin
complex was downloaded (2bxd.pdb).To identify the exact site
of interaction, the copper complex was placed on a DNA helix, and
MD simulation up to 100 ps (interval of 0.5 ps) at 300 K (Supporting Table 1) was run to obtain the most
stable complex (lowest energy). Force-field refinement was used throughout
the process. A force-field refinement algorithm was used during docking,
and a series of binding scores were obtained. The binding score with
the lowest root-mean-square deviation (rmsd) was taken as the free
energy of binding. For docking with HSA, the same methodology was
applied.[65]
In Vitro Cytotoxicity Assay
The anticancer activities
of complex 1 on the human cervical carcinoma cell line
(HeLa) and ovarian cancer cell line (PA1) along with the HEK 293 normal
cell line were determined by the traditional MTT assay technique.
Cells were seeded at a density of 2 × 105 cells/well
in a 24-well plate. After 24 h of cell seeding, cells were exposed
to complex 1 at different concentrations for 24 and 48
h. After incubation, cells were washed with 1× PBS twice. Then,
they were treated with 0.5 mg/mL MTT solution (SRL) and incubated
for 3–4 h at 37 °C until a purple-colored formazan product
developed. The resulting product was dissolved in DMSO, and the OD
was calculated at 570 nm using a microplate reader (Biorad). The rate
of survival was determined using the following formula:[68,69]where ODAT = absorbance of control
cells and ODAC = absorbance of treated cells.
Acridine Orange
(AO) and Propidium Iodide (PI) Dual Staining
HeLa cells were
plated at a density of 5 × 104 in
24-well plates with an overnight incubation at 37 °C in a CO2 incubator. Cells were treated with the desired concentration
of complex 1 after 4 h of serum starvation and then incubated
at 37 °C for 24 and 48 h. After incubation, the culture medium
was aspirated, and cells were washed with 1× phosphate-buffered
saline (PBS) twice. The cells were stained with equal volumes (20
μM, AO-PI 1:1) of acridine orange and propidium iodide. The
stained cells were kept in the dark for 30 min. The cells were washed
once with 1× PBS, and microscopic fluorescence images are obtained.[70,71]
Authors: Sofia Balou; Athanasios Zarkadoulas; Maria Koukouvitaki; Luciano Marchiò; Eleni K Efthimiadou; Christiana A Mitsopoulou Journal: Bioinorg Chem Appl Date: 2021-05-12 Impact factor: 7.778