| Literature DB >> 35842216 |
Qiaoqiao Yin1, Yuecui Li2, Hongyi Pan3, Tianchen Hui4, Zhaonan Yu5, Haiyan Wu6, Dehe Zhang7, Wei Zheng1, Shouhao Wang8, Zhewen Zhou4, Chengan Xu9, Wenhao Wu8, Yongxi Tong1, Haoyi Wang5, Hongying Pan10.
Abstract
OBJECTIVES: Here, we retrospectively described the diagnosis and treatment of 32 cases diagnosed with Chlamydia psittaci pneumonia during the COVID-19 pandemic.Entities:
Keywords: Atypical pneumonia; COVID-19; Chlamydia psittaci; Psittacosis; mNGS
Mesh:
Year: 2022 PMID: 35842216 PMCID: PMC9276535 DOI: 10.1016/j.ijid.2022.07.027
Source DB: PubMed Journal: Int J Infect Dis ISSN: 1201-9712 Impact factor: 12.074
C. psittaci-specific primers used in this study.
| Primer set | Sequence (5’-3’) | F/R | Target | Size(bp) |
|---|---|---|---|---|
| 1 | GCAGGATACTACGGAGATTATGTTTTC | F | 426 | |
| ACGTGCACCTACGCTCCAAGA | R | |||
| 2 | CAATACGCTCAATCTAATCCTAAAATTGA | F | 341 | |
| CCTAAAAGGGTTGGGTTCCATGT | R |
Abbreviations: F/R= forward/reverse.
Patient characteristics.
| Characteristics | Patients, n (%) | Median value, (range) |
|---|---|---|
| Male/female | 20/32 | |
| Age | 63 (45-84) | |
| History of exposure to poultry upon first admission | 7/32 (21.9) | |
| History of exposure to poultry after diagnosis | 32/32 (100) | |
| Underlying diseases | 20/32 (62.5) | |
| Fever (>38.5°C) | 17/32 (53.1) | 38.5°C (36-40.1°C) |
| -Headache | 2/32 (6.3) | |
| Myalgia | 3/32 (9.4) | |
| Cough and expectoration | 26/32 (81.3) | |
| Hypotension (<90/60 mm Hg) | 2/32 (6.3) | |
| Invasive ventilator support | 13/32 (40.6) | |
| Blood oxygen <60 mm Hg | 2/32 (6.3) | 88.4 (59.9-159 mmHg) |
| Elevated WBC (normal 4-10 × 109/l) | 4/32 (12.5) | 6.87 (2.99-29.5 × 109 /l) |
| Elevated percentage of neutrophils (normal 45-75%) | 30/32 (93.8) | 86.3 (73.2-97.3%) |
| Elevated CRP (normal 0-8 mg/l) | 32/32 (100) | 170.85 (44.3-245.4 mg/l) |
| Elevated PCT (normal 0-0.5 ng/l) | 18/32 (56.3) | 0.715 (0.09-22.459 ng/l) |
| Elevated BUN (normal 3.2-7.1 mmol/l) | 10/32 (31.3) | 5.175 (2.71-17.58 mmol/l) |
| Elevated CRE (normal 40-133 mmol/l) | 4/32 (12.5) | 67.5 (15-115 mmol/l) |
| Elevated ALT (normal 7-40 µ/l) | 21/32 (65.6) | 58.15 (13-309.4 µ/l) |
| Elevated AST (normal 13-35 µ/l) | 25/32 (78.1) | 70.4 (17-739.9 µ/l) |
| Elevated TB (normal 3.4-24 µmol/l) | 4/32 (12.5) | 12.5 (7-48.3 µmol/l) |
| Elevated DB (normal 0-6.8 µmol/l) | 14/32 (43.8) | 4.9 (2-27.6 µmol/l) |
| Doxycycline | 19/32 (59.4) | |
| Moxifloxacin + Doxycycline | 13/32 (40.6) | |
| Survival | 32/32 (100) |
Abbreviations: ALT = serum alanine aminotransferase, AST = serum aspartate aminotransferase, BUN = blood urea nitrogen, CRE = serum creatinine, CRP = C-reactive protein DB = direct bilirubin, PCT = procalcitonin, TB = total bilirubin, WBC = white blood cell.
mNGS and confirmative PCR results.
| Sample Type | Sample number | Median number of reads with | Mean number of reads with | Positive PCR, n (%) |
|---|---|---|---|---|
| BALF | 18 | 308 | 1015 | 18 (100%) |
| Blood | 9 | 35 | 33 | 6 (66.7) |
| Sputum | 5 | 12 | 233 | 5 (100%) |
Abbreviations: PCR = polymerase chain reaction.