| Literature DB >> 35833543 |
Adrian I Campos1,2,3, Enda M Byrne3,4, Frank Iorfino5, Chiara Fabbri6,7, Ian B Hickie5, Cathryn M Lewis6, Naomi R Wray3,8, Sarah E Medland1, Miguel E Rentería1,2, Nicholas G Martin1.
Abstract
Emergence of suicidal symptoms has been reported as a potential antidepressant adverse drug reaction. Identifying risk factors associated could increase our understanding of this phenomenon and stratify individuals at higher risk. Logistic regressions were used to identify risk factors of self-reported treatment-attributed suicidal ideation (TASI). We then employed classifiers to test the predictive ability of the variables identified. A TASI GWAS, as well as SNP-based heritability estimation, were performed. GWAS replication was sought from an independent study. Significant associations were found for age and comorbid conditions, including bipolar and personality disorders. Participants reporting TASI from one antidepressant were more likely to report TASI from other antidepressants. No genetic loci associated with TAS I (p < 5e-8) were identified. Of 32 independent variants with suggestive association (p < 1e-5), 27 lead SNPs were available in a replication dataset from the GENDEP study. Only one variant showed a consistent effect and nominal association in the independent replication sample. Classifiers were able to stratify non-TASI from TASI participants (AUC = 0.77) and those reporting treatment-attributed suicide attempts (AUC = 0.85). The pattern of TASI co-occurrence across participants suggest nonspecific factors underlying its etiology. These findings provide insights into the underpinnings of TASI and serve as a proof-of-concept of the use of classifiers for risk stratification.Entities:
Keywords: antidepressants; genetics; suicide
Mesh:
Substances:
Year: 2022 PMID: 35833543 PMCID: PMC9544797 DOI: 10.1002/ajmg.b.32913
Source DB: PubMed Journal: Am J Med Genet B Neuropsychiatr Genet ISSN: 1552-4841 Impact factor: 3.358
FIGURE 1TASI prevalence is independent of antidepressants prescribed. Number (a,c) and percentage (b,d) of subjects reporting TASI across all antidepressants (a,b) and stratified by antidepressant used (c,d). Note the similar prevalence (~13%) regardless of antidepressant. (e) TASI prevalence across ages and stratified by sex in our sample. Odds ratios are shown within the figure
FIGURE 2TASI correlations suggest a common underlying mechanism for all tested antidepressants. Within‐subject antidepressant TASI correlations for subjects who have taken pairs of antidepressants are depicted as a heat map. Higher pairwise correlations indicate a higher TASI case overlap, suggesting a common underlying mechanism (lower diagonal). The number of participants reporting intake of two antidepressants is depicted on the upper diagonal (minimum N = 274)
FIGURE 3Comorbidities such as bipolar and personality disorder and thoughts of death during depressive episodes are associated with TASI. Forest plots depict the TASI odds ratio for (a) comorbid disorders and (b) depressive symptoms during past depressive episodes. Diamonds represent mean estimates while horizontal lines show 95% CI. ORs were estimated from a multivariate logistic regression accounting for all relevant covariates (see methods)
FIGURE 4TASI genome‐wide association study. Manhattan plot depicting the results of a genome‐wide association study on TASI. Each dot represents a genetic variant. The position on the y‐axis shows the significance of the association between the variant and TASI. Variants are sorted by chromosome and genomic position. The red (solid) and blue (dashed) lines represent genome‐wide and suggestive significance thresholds, respectively
FIGURE 5Classifier algorithms trained on TASI can be used to predict TASI and TASA. (a) Receiver operating characteristic (ROC) curve comparing five different machine learning methods for TASI prediction. (b) Curve comparing the precision and recall of the different models. In both graphs, the dashed line represents the expected results from a random guess. Areas under the curve summarize the overall performance of the different models. (c) Distribution of average decision function score (probability) for 1,000 cross‐validations predicting TASI and TASA using the logistic regression model. (d) and (e) Performance of a logistic regression trained to classify TASI used to predict TASA. AUC, area under the curve; LR, logistic regression; NB, Naïve Bayes classifier; (see methods), TASI, treatment attributed suicide ideation; TASA, treatment attributed suicide attempt; Controls, no treatment attributed suicidality. ***p < .001