| Literature DB >> 35831516 |
Guidmar C Donalle1,2, María Martha Martorell3, Gastón E Siless1,2, Lucas Ruberto4, Gabriela M Cabrera5,6.
Abstract
The Antarctic fungus Cadophora malorum produces previously undescribed cyclic heptapeptides (cadophorin A and B) containing an anthranilic acid residue. The planar structure of these peptides was determined by high-resolution mass spectrometry combined with extensive 1D and 2D NMR spectroscopy. The absolute configuration of the amino acids was determined by Marfey's method, with HPLC analysis of FDVA (Nα-(2,4-dinitro-5-fluorphenyl)-L-valinamide) derivatives making use of a PFP column. Remarkably, cadophorin 2 possesses both the uncommon D-Ile and D-allo-Ile in its structure. The peptides have metal binding properties as shown by LCMS with post column addition of metal salt solutions. These results were supported by DFT calculations.Entities:
Keywords: Cadophora malorum; Cyclic peptide; Metal binding
Year: 2022 PMID: 35831516 PMCID: PMC9279517 DOI: 10.1007/s13659-022-00348-x
Source DB: PubMed Journal: Nat Prod Bioprospect ISSN: 2192-2209
Fig. 1Cadophorins A and B isolated from Cadophora malorum. A is cadophorin A and B is cadophorin B
13C NMR (500 MHz) and 1H NMR (125 MHz) data for cadophorins A and B
| Number | Cadophorin A | Cadophorin B | |||
|---|---|---|---|---|---|
| NH | 7.42, d (6.5) | 7.42, d (6.5) | |||
| 1 | 172.0, CO | 172.0, CO | |||
| 2 | 49.2, CH | 4.32, qi (6.5) | 49.2, CH | 4.32, qi (6.5) | |
| 3 | 20.9, CH3 | 1.32, d (6.5) | 20.8, CH3 | 1.32, d (6.5) | |
| NH | 8.23, d (9.4) | 8.22, d (9.5) | |||
| 1 | 170.7, CO | 170.7, CO | |||
| 2 | 52.3, CH | 5.27, dd (9.4, 2.6) | 52.3, CH | 5.27, dd (9.5, 2.4) | |
| 3 | 37.3, CH | 1.85, m | 37.3, CH | 1.85, m | |
| 4 | 27.0, CH2 | 1.21, m | 27.0, CH2 | 1.21, m | |
| 5 | 12.4, CH3 | 1.03, t (7.1) | 12.3, CH3 | 1.03, t (7.2) | |
| 6 | 15.1, CH3 | 0.83, d (6.9) | 15.1, CH3 | 0.83, d (6.8) | |
| 1 | 170.6, CO | 170.6, CO | |||
| 2 | 62.2, CH | 4.40, dd (8.6, 1.5) | 62.2, CH | 4.40, dd (8.7, 1.7) | |
| 3 | 29.8, CH2 | 2.12, 2.01, m | 29.9, CH2 | 2.12, 2.01, m | |
| 4 | 24.1, CH2 | 1.97, 1.76, m | 24.1, CH2 | 1.97, 1.75, m | |
| 5 | 46.6, CH2 | 3.71, 3.67 m | 46.7, CH2 | 3.72, 3.67, m | |
| ATA | NH | 12.03, s | 11.99, s | ||
| 1 | 168.3, CO | 168.3, CO | |||
| 2 | 119.7, C | 119.7, C | |||
| 3 | 129.2, CH | 7.79, dd (8.0, 1.3) | 129.2, CH | 7.76, dd (8.0, 1.3) | |
| 4 | 123.0, CH | 7.13, dt (8.0, 1.0) | 123.0, CH | 7.12, dt (8.0, 1.1) | |
| 5 | 132.9, CH | 7.49, dt (8.0, 1.3) | 132.9, CH | 7.48, dt (8.0, 1.1) | |
| 6 | 119.3, CH | 8.48, | 119.3, CH | 8.48, d (8.0) | |
| 7 | 139.5, C | 139.5, C | |||
| NH | 8.13, d (9.0) | ||||
| 1 | 170.2, CO | ||||
| 2 | 57.0, CH | 4.78, dd (9.0, 4.0) | |||
| 3 | 31.8, CH | 2.08, m | |||
| 4 | 19.9, CH3 | 0.92, d (6.8) | |||
| 5 | 17.0, CH3 | 0.50, d (6.8) | |||
| NH | 8.15, d (8.9) | ||||
| 1 | 170.2, CO | ||||
| 2 | 57.0, CH | 4.77, dd (8.9, 4.4) | |||
| 3 | 38.4, CH | 1.8, m | |||
| 4 | 23.7, CH2 | 0.93, m | |||
| 5 | 12.0, CH3 | 0.74, t (7.2) | |||
| 6 | 15.8, CH3 | 0.86, d (6.7) | |||
| NH | 8.16, d (10.2) | 8.16, d (10.1) | |||
| 1 | 171.9, CO | 171.9, CO | |||
| 2 | 56.8, CH | 4.62, dt (10.2, 5.2) | 56.8, CH | 4.65, dt (10.1, 5.2) | |
| 3 | 36.5, CH2 | 2.96, 2.93, mAB | 36.5, CH2 | 2.95, m | |
| 4 | 128.1, C | 128.0, C | |||
| 5 | 130.3, CH | 7.06, d (8.5) | 130.3, CH | 7.04, d (8.6) | |
| 6 | 115.5, CH | 6.66, d (8.5) | 115.4, CH | 6.66, d (8.6) | |
| 7 | 156.4, C | 156.4, C | |||
| NH | 8.33, d (9.6) | 8.37, d (9.6) | |||
| 1 | 170.3, CO | 170.3, CO | |||
| 2 | 59.0, CH | 4.05, dd (9.6, 2.4) | 59.0, CH | 4.06, dd (9.6, 2.3) | |
| 3 | 66.8, CH | 4.12, m | 66.8, CH | 4.12, m | |
| 4 | 21.2, CH3 | 1.02, d (6.0) | 21.2, CH3 | 1.02, d (6.1) | |
| OH | 5.15, d (4.3) | 5.18, s | |||
Fig. 2Relevant correlations observed in 2D NMR experiments. A is cadophorin A and B is cadophorin B
Table retention times (RT) of amino acid l-FDVA derivatives
| Amino acid | Theoretical m/z [M+H]+ | Molecular formula [M+H]+ | Standard amino acid | Cadophorin A | Cadophorin B | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Serie L | Serie D | m/z | TR(min) | Error (ppm) | m/z | TR(min) | Error (ppm) | |||
| TR(min) | TR(min) | |||||||||
| Ala | 370.1357 | C14H19N5O7 | 13.3 | 16.5 | 370.1349 | 13.4 | 2.3 | 370.1343 | 13.5 | 3.9 |
| Pro | 396.1513 | C16H21N5O7 | 12.6 | 15.1 | 396.1532 | 12.6 | 4.5 | 396.1505 | 12.6 | 2.3 |
| 412.1826 | C17H25N5O7 | 19.2 | 23.4 | 412.1807 | 23.5 | 4.7 | 412.1810 | 23.4 | 4.1 | |
| Ile | 412.1826 | C17H25N5O7 | 19.4 | 23.6 | – | – | – | 412.1825 | 23.6 | 0.5 |
| Thr | 400.1462 | C15H21N5O8 | 8.4 | 12.9 | 400.1474 | 8.4 | 2.9 | 400.1466 | 8.4 | 0.9 |
| Tyr* | 742.2427 | C31H35N9O13 | 29.5 | 32.7 | 742.2408 | 29.5 | 2.5 | 742.2430 | 29.5 | 0.5 |
| Val | 398.1670 | C16H23N5O7 | 17.0 | 21.5 | 398.1647 | 21.0 | 6.0 | – | – | – |
*Disubstituted derivative
Fig. 3Optimised structures of cadA–Me complexes calculated at the B3LYP level of theory, Me = Mg2+ and Cu2+
Optimised energies for cadA–Me complexes [cadA + Me]2+ calculated at the B3LYP level of theory, Me = Mg2+, Ca2+, Sr2+, Zn2+ and Cu2+ for: cadA + Me(H2O)62+ → [cadA + Me]2+ + 6 H2O
| Me | Base | ||
|---|---|---|---|
| Mg | 6-31G(d) | − 40.21 | − 1.17 |
| Ca | 6-31G(d) | − 37.78 | − 2.76 |
| Sr | LANL2DZ | − 20.38 | 14.51 |
| Sr | 6-31G(d)/LANL2DZ | − 8.05 | 24.84 |
| Zn | 6-31G(d) | − 47.72 | − 12.15 |
| Cu | 6-31G(d) | − 59.51 | − 20.60 |