Diego T Gomez1, Lawrence R Pratt1, Dilipkumar N Asthagiri2, Susan B Rempe3. 1. Department of Chemical & Biomolecular Engineering, Tulane University, New Orleans, Louisiana 70118, United States. 2. Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States. 3. Center for Integrated Nanotechnologies, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States.
Abstract
ConspectusThe interactions of hydrated ions with molecular and macromolecular solution and interface partners are strong on a chemical energy scale. Here, we recount the foremost ab initio theory for the evaluation of the hydration free energies of ions, namely, quasi-chemical theory (QCT). We focus on anions, particularly halides but also the hydroxide anion, because they have been outstanding challenges for all theories. For example, this work supports understanding the high selectivity for F- over Cl- in fluoride-selective ion channels despite the identical charge and the size similarity of these ions. QCT is built by the identification of inner-shell clusters, separate treatment of those clusters, and then the integration of those results into the broader-scale solution environment. Recent work has focused on a close comparison with mass-spectrometric measurements of ion-hydration equilibria. We delineate how ab initio molecular dynamics (AIMD) calculations on ion-hydration clusters, elementary statistical thermodynamics, and electronic structure calculations on cluster structures sampled from the AIMD calculations obtain just the free energies extracted from the cluster experiments. That theory-experiment comparison has not been attempted before the work discussed here, but the agreement is excellent with moderate computational effort. This agreement reinforces both theory and experiment and provides a numerically accurate inner-shell contribution to QCT. The inner-shell complexes involving heavier halides display strikingly asymmetric hydration clusters. Asymmetric hydration structures can be problematic for the evaluation of the QCT outer-shell contribution with the polarizable continuum model (PCM). Nevertheless, QCT provides a favorable setting for the exploitation of PCM when the inner-shell material shields the ion from the outer solution environment. For the more asymmetrically hydrated, and thus less effectively shielded, heavier halide ions clustered with waters, the PCM is less satisfactory. We therefore investigate an inverse procedure in which the inner-shell structures are sampled from readily available AIMD calculations on the bulk solutions. This inverse procedure is a remarkable improvement; our final results are in close agreement with a standard tabulation of hydration free energies, and the final composite results are independent of the coordination number on the chemical energy scale of relevance, as they should be. Finally, a comparison of anion hydration structure in clusters and bulk solutions from AIMD simulations emphasize some differences: the asymmetries of bulk solution inner-shell structures are moderated compared with clusters but are still present, and inner hydration shells fill to slightly higher average coordination numbers in bulk solution than in clusters.
ConspectusThe interactions of hydrated ions with molecular and macromolecular solution and interface partners are strong on a chemical energy scale. Here, we recount the foremost ab initio theory for the evaluation of the hydration free energies of ions, namely, quasi-chemical theory (QCT). We focus on anions, particularly halides but also the hydroxide anion, because they have been outstanding challenges for all theories. For example, this work supports understanding the high selectivity for F- over Cl- in fluoride-selective ion channels despite the identical charge and the size similarity of these ions. QCT is built by the identification of inner-shell clusters, separate treatment of those clusters, and then the integration of those results into the broader-scale solution environment. Recent work has focused on a close comparison with mass-spectrometric measurements of ion-hydration equilibria. We delineate how ab initio molecular dynamics (AIMD) calculations on ion-hydration clusters, elementary statistical thermodynamics, and electronic structure calculations on cluster structures sampled from the AIMD calculations obtain just the free energies extracted from the cluster experiments. That theory-experiment comparison has not been attempted before the work discussed here, but the agreement is excellent with moderate computational effort. This agreement reinforces both theory and experiment and provides a numerically accurate inner-shell contribution to QCT. The inner-shell complexes involving heavier halides display strikingly asymmetric hydration clusters. Asymmetric hydration structures can be problematic for the evaluation of the QCT outer-shell contribution with the polarizable continuum model (PCM). Nevertheless, QCT provides a favorable setting for the exploitation of PCM when the inner-shell material shields the ion from the outer solution environment. For the more asymmetrically hydrated, and thus less effectively shielded, heavier halide ions clustered with waters, the PCM is less satisfactory. We therefore investigate an inverse procedure in which the inner-shell structures are sampled from readily available AIMD calculations on the bulk solutions. This inverse procedure is a remarkable improvement; our final results are in close agreement with a standard tabulation of hydration free energies, and the final composite results are independent of the coordination number on the chemical energy scale of relevance, as they should be. Finally, a comparison of anion hydration structure in clusters and bulk solutions from AIMD simulations emphasize some differences: the asymmetries of bulk solution inner-shell structures are moderated compared with clusters but are still present, and inner hydration shells fill to slightly higher average coordination numbers in bulk solution than in clusters.
.[1] This article gives a basic discussion
of quasi-chemical theory (QCT), including some history, physical motivation,
and the connection between direct and cluster QCT..[2] This paper details the theory and calculation of the QCT inner-shell
contributions, which lay the basis for testing against the cluster–experimental
association free energies..[3] This paper shows how to approximate
the outer-shell contribution by combining the PCM model with structure
sampling from dynamical cluster simulations..[4] This paper reviews local
hydration structures of mono- and divalent cations and assesses the
concept of hydration mimicry for the rapid transport of specific ions
through ion channels. Cluster QCT and surface potentials that provide
hydration free energies are also reviewed.
Introduction
This Account describes
recent research at the intersection of the
topics of ion–water clusters,[5,6] the theory
of solutions,[1,7,8] specific
ion effects,[9−11] and the selectivity of membrane ion channels.[4] We focus on anions in water because of their
central position in classic specific ion effects, so-called Hofmeister
effects.[10] The anions considered here have
been challenges for the molecular quasi-chemical theory (QCT),[1,7,8,12] which
is the most advanced theory available to address hydration while accounting
for chemical-level interactions and because recent theoretical progress
on those challenges seems decisive.[2,3,13,14] We include HO–(aq) in this discussion because of its centrality in aqueous solution
chemistry and the continued theory and simulation interest in this
ion[15−17] and because the new results sharpen our understanding
of the hydration of that ion.
Context: Selectivity of Membrane Ion Channels
As active components of nearly half of all proteins,[18,19] ions can bind to proteins and stabilize conformational states required
for biological function and can participate in enzyme catalysis.[20] As an example, K+ ions bind to membrane
channel proteins and stabilize functional conformations, thereby catalyzing
the permeation of K+ across cellular membranes while also
rejecting other ions such as Na+.[21]Selective ion transport plays an important role in numerous
physiological functions, including electrical signaling and cell volume
control. Loss of ion selectivity, or blocking of ion transport, can
have either catastrophic or beneficial effects. For example, the loss
of selective conduction of K+ over Na+ by potassium
channels in cardiac muscle interferes with the termination of action
potentials, which can lead to life-threatening heart arrhythmia.[21] In beneficial cases of blocked ion transport,
drugs that block specific channels hold promise for treating neurological
disorders, autoimmune diseases, and cancers.[22,23] Peptide toxins from several poisonous animals exemplify detrimental
possibilities of blocked ion transport.[24] Indeed, simple divalent metal ions can be potent channel blockers
by getting trapped in the channel, and both monovalent and divalent
ions permeate selectively. Thus, understanding the mechanisms of specific
ion binding and transport in proteins is important for understanding
protein function critical to health, disease, and therapeutic development.[20]For anions such as Cl–, the regulation of ion
concentration is achieved through membrane transport proteins of the
CLC family and others, including channelrhodopsins, which facilitate
the passage of Cl– through electrochemical potential
gradients.[25−27] While those structurally diverse proteins select
for Cl–, other channel proteins discriminate against
Cl–. An interesting example is FLUC, a family of
fluoride-specific ion channels with dual-topology architecture.[28] These channels display an astonishingly high
selectivity of 104 for F– over Cl– despite their identical charge and their size similarity.
Understanding such mechanisms for selectivity in ion transport has
been a target for many modeling and simulation studies of high variety,
emphasizing the K+/Na+ selectivity of potassium
ion channels; for example, see refs (29−38). However, computational studies of anion transport mechanisms demonstrated
by chloride-selective channels[39−42] that address comparisons to alternatives such as
FLUC are less mature.[3,43]A conceptually natural
strategy for addressing ion selectivity
with computation would be direct simulations controlling for the contrasting
cases or perhaps a clear, quantitative theory that permits controlling
for mechanistic features of the ion binding or transport. Both of
these requests are difficult. Here, we work toward the second of these
alternatives by building a statistical molecular theory of ion binding
thermodynamics.
Free Energies of Binding of Hydrated Ions
Span a Chemical Scale of Energies
QCT[1,7,47] aims to evaluate interaction free energies
of ions in solution[48] (Figure ) and protein binding sites.[1,4,29,30,32,33,35,46,47,49−55] That interaction free energy, or excess chemical potential,is obtained from the full chemical potential
μX less the indicated ideal contribution. Here, T is the temperature, R is the molar gas
constant, ρX is the number density of the ion of
interest, and is the canonical partition function of
a molecule X in volume V.[4,56]
Figure 1
QCT hydration
free energies, μX(ex), for several aqueous ions. Values
for anions are shown by open circles. The computed value for Ni2+(aq) is taken from the reevaluation of ref (44). Results for H+(aq) are from refs (45) and (46). The following
discussion unpacks the QCT theory that is applied. These results are
the most deliberate attempt at an ab initio evaluation
of these free energies. The values shown are all much larger in magnitude
than RT.
QCT hydration
free energies, μX(ex), for several aqueous ions. Values
for anions are shown by open circles. The computed value for Ni2+(aq) is taken from the reevaluation of ref (44). Results for H+(aq) are from refs (45) and (46). The following
discussion unpacks the QCT theory that is applied. These results are
the most deliberate attempt at an ab initio evaluation
of these free energies. The values shown are all much larger in magnitude
than RT.These free energies—single-ion activities
when X is an ion—are
knowable and appropriate targets for computation, but they are not
measured solely on the basis of classic thermodynamics. Thus, widely
available tabulations—Figure utilizes one such tabulation—adopt extrathermodynamic
assumptions.Observe (Figure ) that the free energies span a chemical energy scale
much larger
than RT ≈ 0.6 kcal/mol at room temperature.
For example, the hydration free energy of Be2+ is about
1000RT. Clustered below −400
kcal/mol are values for divalent transition-metal ions.[44,51] Including the aqueous ferric ion, Fe3+(aq), for which
QCT performs satisfactorily,[57] would require
expanding the range of Figure by another factor 2. Thus, though the now-canonical van der
Waals perspective on liquids is an appropriate definition of the statistical
mechanical problem for treating liquids generically, it immediately
emphasizes <1%-magnitude free-energy effects. In contrast, the
basic concept of QCT is to treat an ion together with inner-shell
partners as an individual molecular species.[1,7,12,57−59] Interactions of typical ions with inner-shell partners are chemical
in nature, molecularly intricate, and intense on a thermal scale.
The concept of “inner-shell” partners is central to
QCT. It identifies near neighbors of a targeted species and will be
discussed later for the present applications.Molecular quasi-chemical
theory (QCT)[1,7,8,59] was developed with
the explicit goal of including chemical-level interactions within
a molecular statistical thermodynamic theory. Initial applications
were simple and remarkably accurate.[58] That
success obviates a canonical “molecular force-field fitting
→ molecular simulation” workflow in the study of liquids.
Direct QCT
The basic status of
QCT may be supported by the fact that QCT itself can be implemented
through molecular simulation calculations.[8] That approach is termed “direct” QCT.[60] In the direct approach, we acknowledge and exploit the
spatial dependence of solute–solvent interaction strengths.
The short-range interactions can be chemically involved, and for a
suitable choice of the inner shell, the long-range interactions admit
a Gaussian statistical model. This direct QCT approach parses the
hydration free energy into physically meaningful and computationally
well-defined chemical, packing, and long-range nonspecific contributions,
thereby becoming a framework for conceptualizing molecular solutions.[12]Direct QCT works naturally with common
simulation packages based on either empirical classical or ab initio force fields.[8] On that
simulation basis, QCT provides a compelling molecular theory of liquid
water itself.[61−63] The direct QCT approach enabled the first direct
calculation of the hydration free energy of a protein.[64] Subsequent studies have highlighted the limitations
of additive models of free energies that are de rigueur in biophysical speculation and recently led to transformative insights
into decades-old assumptions about hydrophobic hydration in proteins.[65]Nevertheless, the initial motivation was
the exploitation of molecular
electronic structure calculations within statistical thermodynamic
modeling.[57] That approach is called “cluster”
QCT, wherein the chemical contribution noted above is related to physical
solute–solvent clusters. The connection between direct and
cluster approaches has been deliberately discussed elsewhere.[1,8,12,66]
Cluster QCT
Cluster QCT provides
a concise format,for the free energies that we seek. This is
exact statistical thermodynamics[1] and provides
a foundation for mixed-resolution approaches, such as QM/MM. We will
discuss these three terms in turn. The first term on the right of eq is the inner-shell contribution.
It is obtained by studying n water molecules clustering
with the X species of interest[2] but without
the exterior solution. This contribution involves the equilibrium
constant, K(0), discussed in section 2.1 below. By utilizing the solution density of the
ligands, , this term properly assesses the availability
of the water molecule ligands.The rightmost term of eq is the outer-shell contribution.
This term involves the hydration of the identified (H2O)X cluster, addressing interactions of the
cluster with the exterior solution environment. Previous applications
of QCT have utilized the polarizable continuum model (PCM)[67] for this task. (See refs (68) and (69) as examples.) PCM has
been incorporated into standard electronic structure codes and focuses
on the interactions with the solution at long range. Nevertheless,
it is approximate on a molecular scale, and a symptom of that approximate
character is the sensitivity of PCM results to radii parameters that
are required. We will discuss that issue further below.The
remaining term in eq involves the probability pX(n) that n water molecules contact a distinguished
X during its physical motion in solution. This term describes the
polydispersity of the populations of an X inner shell; if only one
size, say n, were possible, then ln pX(n) = 0. The determination
of pX(n) requires the
adoption of a proximity criterion describing how a water molecule
contacts an X.[3,13,14,70] That polydispersity contribution is typically
the smallest of these three and is conceptually the simplest, and
here we utilize the AIMD simulation of the solution of interest to
compute this term.
Anion Hydration
QCT applies to
both cation and anion hydration cases. In contrast to cations, however,
anion hydration clusters often exhibit H-bond donation to the ion
(Figure ; see also
ref (70).). Anion-hydration
clusters can be structurally delicate, specifically involving ligand–ligand
hydrogen bonds, and that can make hydrated anions more challenging
cases.
Figure 2
Structure sampled from the AIMD trajectory for the isolated (H2O)5F– cluster.
Structure sampled from the AIMD trajectory for the isolated (H2O)5F– cluster.Initial QCT applications to hydrated anions worked
simply with
reasonable accuracy[3,13,14,46] compared with experiments.[71] Nevertheless, specifics of the technical ingredients can
be perplexing (Figure ). The refinement of those initial applications has led to the further
considerations discussed here, specifically, treatment of anharmonic
effects on free energies of ion hydration clusters and the status
of the polarizable continuum model[67] (PCM)
for the hydration free energy of those clusters.
Figure 3
Cluster free energies
using the harmonic approximation compared
with experimental values for (H2O)HO– and 1 ≤ n ≤
4. The implicit density is ρ0 = p/RT with p = 1
atm and T = 300 K. The molecular graphic insets show
optimized structures for each n. The legend indicates
electron density functional and basis sets, thus demonstrating the
sensitivity to those aspects of these calculations. K(0) is the traditional equilibrium constant, introduced with eq below.
Cluster free energies
using the harmonic approximation compared
with experimental values for (H2O)HO– and 1 ≤ n ≤
4. The implicit density is ρ0 = p/RT with p = 1
atm and T = 300 K. The molecular graphic insets show
optimized structures for each n. The legend indicates
electron density functional and basis sets, thus demonstrating the
sensitivity to those aspects of these calculations. K(0) is the traditional equilibrium constant, introduced with eq below.
Theory Implemented with Simulation Data
We implement QCT here by bringing together quantities available
from several different standard computations. The simulation work
here thus contrasts with “let’s take a look”
direct numerical simulations. Indeed, QCT seeks to define minimal
clusters that provide the information necessary for the statistical
thermodynamic theory; thus, we explicitly do not attempt to construct
observational dynamical simulations, nor do we seek a large cluster-size
limit in our simulation calculations.[72] Before returning to discuss the theory, we note the details required
for the computational procedures in the following. In addition, AIMD
simulations of these systems are indeed readily available, and those
observational calculations help to secure details that fill-out our
understanding of these systems. Here, we note some of that previous
work.The extended work of Heuft and Meijer[73−75] initiated AIMD
calculations on halide anions in water. They noted that residence
times of water ligands in a halide inner shell spanned approximately
8, 12, and 17 ps for I–, Cl–,
and F–, respectively. Those time scales are readily
accessible by current AIMD calculations.The interesting work
of Wiktor et al.[76] focused on a basic thermodynamic
quantity, the partial molar volumes
of ions in water. Such studies are likely to provide fruitful next
steps in the understanding of these systems.The AIMD of Duignan
and co-workers[77,78] on F–(aq) also
focused on a basic thermodynamic characteristic of simple
ions in water, namely, hydration free energies. They made a case for
the application of ultrahigh accuracy electronic structure calculations
to these problems. Our discussion below will identify aspects of the
present efforts that overlap with that previous work but support a
different conclusion: specifically, standard electronic structure
calculations, properly integrated into statistical thermodynamic theory,
are sufficient for experimental accuracy.Finally, for this
section, we note the extensive AIMD work on HO–(aq)
that has been exhaustively reviewed.[16,17] Though that
work did not proceed to the evaluation of standard thermodynamic
characteristics, the discussions below will elaborate on specific
points of comparison.
Procedures for Bulk X(aq) Solutions
The data utilized here for F–(aq) and Cl–(aq) was obtained from previous work[3,14] that treated
a single ion and 64 water molecules using the VASP simulation package.[79] The system was a cubic cell of edge 1.24 nm
with periodic boundary conditions. The PW91 generalized gradient approximation
described the core–valence interactions using the projector
augmented wave (PAW) method. Plane waves with a kinetic energy cutoff
of 400 eV and a time step of 0.5 fs were used for the simulation in
the NVE ensemble. A temperature of 350 K was targeted for the simulation
to avoid glassy behavior that can result at lower T.[3,14] After discarding 50 ps of trajectory as aging, our
analysis was based on a 50 ps production trajectory.For HO–(aq), Br–(aq), and I–(aq), the AIMD calculations are new here and used the CP2K simulation
package[80] to treat a single ion and 64
water molecules under periodic boundary conditions. We adopted the
PBE functional with Goedecker, Teter, and Hutter[81] (GTH) pseudopotentials in the GPW schemes,[82] as broadly used and consistent with our previous cluster
results.[70] Molecularly optimized DZVPMOLOPT-SR-GTH
basis sets were obtained from the CP2K website. Plane waves with a
kinetic energy cutoff of 400 eV and a time step of 0.5 fs were used
for the simulation in the NVT ensemble. The cubic cell with edge 1.27
nm reasonably matches the experimental density of water under our
standard conditions. T = 300 K was selected[83] through the Nosé–Hoover thermostat.
Our analysis was based on 50 ps of production trajectory after 50
ps of aging. Figure provides a standard overview of the bulk solution structures observed.
Figure 4
Radial
distributions of H2O molecule H atoms relative
to the X anion from the AIMD trajectory, with the left panel for the
isolated (H2O)3X cluster and the right panel
for X(aq) with periodic boundary conditions corresponding to our thermodynamic
state. The neighborship-ordered distributions on the left panel are
normalized to 1/ϱH, with ϱH being
the number density of solvent H atoms for the right panel. These distributions
are thus directly comparable. The red dashed curves (right-side axes)
give the running H-atom coordination number, nH|X(r). For the (H2O)3HO– cluster, nH|O(r) plateaus near 3, indicating simple H-bond donation. For
the bulk solution, nH|O(r) plateaus at about 3.8.
Radial
distributions of H2O molecule H atoms relative
to the X anion from the AIMD trajectory, with the left panel for the
isolated (H2O)3X cluster and the right panel
for X(aq) with periodic boundary conditions corresponding to our thermodynamic
state. The neighborship-ordered distributions on the left panel are
normalized to 1/ϱH, with ϱH being
the number density of solvent H atoms for the right panel. These distributions
are thus directly comparable. The red dashed curves (right-side axes)
give the running H-atom coordination number, nH|X(r). For the (H2O)3HO– cluster, nH|O(r) plateaus near 3, indicating simple H-bond donation. For
the bulk solution, nH|O(r) plateaus at about 3.8.
Procedures for Isolated (H2O)X
Molecular dynamics trajectories
of the isolated (H2O)X clusters
for 2 ≤ n ≤ 5 and X = F–, HO–, Cl–, Br–, and I– were obtained using CP2K, just as for
the HO–, Br–, and I– bulk solution calculations specified above. The pseudopotentials,
functionals, and basis sets were the same. These simulations set the
temperature at 300 K with the Nosé–Hoover thermostat,
using the GPW basis with default settings and a kinetic energy cutoff
of 400 eV. Five picoseconds of the production trajectory, with a time
step of 1 fs, was analyzed after 5 ps of aging.For our statistical,
or rough landscape, analysis of those trajectories, cluster structures
were screened for consistency with our clustering definition (Figure ). Each clustered
configuration is analyzed, according to the right-hand side of eq , and the separate structures
are subjected to single-point calculations using the Gaussian[84] electronic structure software with the PBE functional
and the DEF2TZVP basis set for F–, HO–, Cl–, Br–, and I– configurations. Using the resulting thermal averaging in eq and K1(0) from experiment,
the resulting stepwise K(0) (Figure ) produce the accurate results
used below.[2,70]
Figure 5
Clustering of inner-shell water molecules
with the central anion.
(Top panel): Primitive clustering criterion requiring a clustered
water molecule to donate an H atom to the sphere within radius r of the ion. The rightmost water molecule is a member of
this cluster, but the leftmost is not. The bottom water molecule donates
two H atoms though counts only one ligand. (Middle panel): Clustered
configuration chosen arbitrarily from the AIMD trajectory for an isolated
(H2O)4I–. (Bottom panel):
Clustered configuration selected arbitrarily from the AIMD simulation
of I–(aq) solution. These graphics illustrate asymmetric
anion hydration that is moderated in the bulk solution (bottom) compared
with clusters (middle).
Figure 6
For HO–, free energies for the inner-shell
contributions
(eq ). The implicit
density is ρ0 = p/RT with p = 1 atm and T = 300 K. The embedded graphics depict structures sampled from the
AIMD trajectory.
Clustering of inner-shell water molecules
with the central anion.
(Top panel): Primitive clustering criterion requiring a clustered
water molecule to donate an H atom to the sphere within radius r of the ion. The rightmost water molecule is a member of
this cluster, but the leftmost is not. The bottom water molecule donates
two H atoms though counts only one ligand. (Middle panel): Clustered
configuration chosen arbitrarily from the AIMD trajectory for an isolated
(H2O)4I–. (Bottom panel):
Clustered configuration selected arbitrarily from the AIMD simulation
of I–(aq) solution. These graphics illustrate asymmetric
anion hydration that is moderated in the bulk solution (bottom) compared
with clusters (middle).For HO–, free energies for the inner-shell
contributions
(eq ). The implicit
density is ρ0 = p/RT with p = 1 atm and T = 300 K. The embedded graphics depict structures sampled from the
AIMD trajectory.
Discussion and Results
Inner-Shell Contributions
The study
of the associative equilibriais a basic feature of QCT. Here X ≡
F–, HO–, Cl–, Br–, or I–. Equation directs attention towhere is the number density of (H2O)X species. K(0) requires the definition of formed (H2O)X clusters for the evaluation of actual densities. Such definitions
amount to defining the proximity of an H2O ligand to an
X ion. Although judgment might be required for a natural proximity
definition, here we defer the discussion of that definition until
after subsequent QCT developments.Our scheme for evaluating K(0) is anchored in classic statistical thermodynamics[3,7,56] and proceeds incrementally followingThis formulation introduces the energy
differencesThe brackets in eq , ⟨···|n⟩, indicate the thermal average utilizing the canonical simulation
stream for the (H2O)X cluster.[3] The symbol β stands for 1/RT.The evaluation of the energy combination ΔU, eq , starts with the sampled configuration of the (H2O)X cluster. Each ligand in turn
serves to compose the energy difference suggested by the exchangeGeometries of species on the right of eq conform to the sampled
(H2O)X structure on the left.
To appreciate ΔU, we use the following accounting. Consider first the contribution
{U[(H2O)X]
– U[(H2O)X]}. This is the energy change for introducing an
additional H2O ligand into an (H2O)X complex. The remaining combination {U[(H2O)X] – U[X]} is
the energy change for introducing one H2O ligand to a bare
X ion. The difference ΔU thus reflects the crowding of the nth H2O ligand, including any degradation of binding of the nth H2O ligand to the X ion (Figure ).
Figure 7
Distribution of βΔU3 (eq ). The solid line is the
Gaussian model distribution with the sample mean and variance. Positive
values of βΔU3 reflect the
unfavorable crowding of ligands. The required single-point calculations
used the PBE functional and the DEF2TZVP basis.
Distribution of βΔU3 (eq ). The solid line is the
Gaussian model distribution with the sample mean and variance. Positive
values of βΔU3 reflect the
unfavorable crowding of ligands. The required single-point calculations
used the PBE functional and the DEF2TZVP basis.Charge is balanced in eq , and the energy combination of eq is not affected by the electrostatic
potential
of the phase.[4]For n = 1, eq correctly
reduces to the trivial case of K0(0) = 1. In
evaluating K(0) for n ≥
2, the value of K1(0) can be supplied from experiment[71] or alternative theory. This term incorporates
the interaction strength between X and one H2O molecule.
Carrying out subsequent steps in this scheme then addresses the issues
that make anion hydration more challenging, i.e., competing interactions
of neighboring H2O molecules in those clusters.Figure shows that
a modest vertical shift of those harmonic approximation values substantially
improves the agreement between harmonic approximation computations
and experimental results throughout. Since the approach from eq takes K1(0) as input,
the present more detailed development should benefit similarly. This
approach does not directly address issues of quantum mechanical zero-point
motion, except to the extent that a pragmatic inclusion of an external K1(0) incorporates zero-point motion empirically. The empirical grounding
of this procedure might be particularly relevant to the multimodal
possibilities of the H atom that is interior to (HO)HOH–,[16] similar to the Zundel cation (H2O)H(OH2)+. This inner-shell evaluation
can use electronic-structure methods of arbitrary sophistication since
the calculations need be carried out only for modest-sized clusters.
These results reexamine a previous application of QCT to HO–(aq) that was strikingly accurate for the dissociation thermodynamics.[46]
Specific Definition of Clustering
In the discussion above, we did not address the consequences of any
specific clustering proximity definition. That delinquency amounts
to the assumption that complexes encountered in our cluster simulations,
i.e., at moderate temperatures, are typically well clustered. Going further, we consider how a specific treatment might
be built from here. A simple clustering criterion is that a clustered
water molecule should donate at least one H atom within an assigned
radius of the ion (Figure ).We introduce a geometric indicatorof a clustered configuration. bX(k) indicates whether molecule k is clustered (value 1) with the ion X or not (value 0).
χ takes a value of 1 if the n molecules are clustered with the ion and zero otherwise.
Thus, χ is indeed an indicator
function.We will denote by K̅(0) as the equilibrium
constant obtained by our scheme above without the definition of a
restrictive inner-shell region. Thenwhere ⟨χn⟩
indicates the statistical average evaluated as above, without a specific
definition of clustered.Note that 0 ≤ χ ≤
1 and thus ln[K(0)/K̅(0)] ≤ 0. This result makes physical sense because matching the
natural clustering should not increase the free energy.An interesting
physical consideration is that the experimental
results implicitly describe some specific physical clustering. Poorly
formed physical clusters, not conforming to our mathematically defined
cluster, might lose a weakly bound ligand, which would then populate
the outer shell, perhaps to be pumped away in the experiment. These
considerations raise the question, what clustering definition is most
appropriate for the experiments?The estimated average, ln⟨χ⟩, sampled from AIMD dynamics of (H2O)X for 2 ≤ n ≤
5 clusters (Table ) shows that, generally, as n increases, ⟨χ⟩ decreases as repulsive interactions
between water molecules force ligands to the outer shell. This behavior
is especially evident for (H2O)5I– on the one hand, where none of the sampled configurations had all
five water molecules within the defined inner shell. On the other
hand, ln⟨χ⟩ ≈
0 for (H2O)3HO– (Table ), which indicates
that the present clustering definition effectively encompasses the
region of physical clustering for that case.
Table 1
Estimated ln⟨χ⟩ from AIMD Calculations of (H2O)X Defined Abovea
n
ion (X)
2
3
4
5
F– (0.27 nm)
0.00
–0.21 ± 0.07
–1.61 ± 0.28
– 1.05 ± 0.19
HO– (0.25 nm)
–0.02 ± 0.02
0.00
–2.83 ± 0.56
Cl– (0.29 nm)
0.00
–0.06 ± 0.03
–0.42 ± 0.10
–2.21 ± 0.40
Br– (0.31 nm)
–0.13 ± 0.05
–0.22 ± 0.07
–0.42 ± 0.10
–1.61 ± 0.28
I– (0.34 nm)
–0.13 ± 0.05
–0.36 ± 0.09
–0.20 ± 0.07
Production trajectories were
sampled at 10/ps so that the sample sizes were m =
51. The indicated uncertainties approximate one standard error according
to the formula , which assumes independence of the observations.
The radius parameters r (Figure ) are noted in parentheses. This parameter
was chosen to match approximately the first minimum of the observed gH|X; see Figure .
Production trajectories were
sampled at 10/ps so that the sample sizes were m =
51. The indicated uncertainties approximate one standard error according
to the formula , which assumes independence of the observations.
The radius parameters r (Figure ) are noted in parentheses. This parameter
was chosen to match approximately the first minimum of the observed gH|X; see Figure .
Outer Shell and PCM
The outer-shell
cluster contribution of eq to the hydration free energy can be treated[3] using the polarizable continuum model[67] (PCM) in the Gaussian suite of electronic structure programs.[84] The geometrical structures sampled from the
AIMD trajectory for (H2O)X
were subjected to two single-point electronic calculations separately:
one for the isolated cluster and a second with the external (dielectric)
medium described by the PCM tool. The difference, ε̅, is employed in computingwhere m is the number of
configurations from the simulation stream that satisfies the clustering
definition. Equation corresponds to the potential distribution theorem (PDT) approach,[1,56] recognizing that thermal fluctuations implicit in the PCM[67] approach complete the PDT averaging.PCM
is an approximate description of molecular-scale aspects of hydration.[85] PCM does include approximate accounts of packing
effects and dispersion interactions, secondary to long-range electrostatic
interactions.[67] Our discussion has emphasized
that QCT is built by the identification of inner-shell clusters, the
separate treatment of those clusters, and the integration of those
results into the broader-scale solution environment. Inevitably, approximations
are required to describe the outer-shell effects, and here those approximations
are bundled in the PCM model.The approximate character of the
PCM model is signaled by the sensitive
dependence on radii parameters that locate jumps in dielectric responses
used in defining the model. It is reassuring that empirical values
of those parameters are of reasonable magnitude. Still, the results
are sensitive to those radii parameters, and they are not determined
by theory[86] or experiment separate from
the model. It is striking and important that QCT moderates that sensitivity
by the subtraction of the ligand free energies in the formulation
of that outer-shell contribution.[1,58] That insensitivity
is achieved operationally by the boundaries of X being somewhat buried
by the ligands and the ligand boundaries being unchanged in the subtraction
(eq ). The indicated
subtraction reflects the appearance of the factors together with K(0) of eq .For the cases of F–(aq) and Cl–(aq), we know already that this PCM-assisted application of QCT works
satisfactorily[3] and similarly for HO–(aq).[46,70,87] For the cases of Br–(aq) and I–(aq), that procedure is somewhat degraded,[70] which we surmise as being due to the asymmetric hydration (Figure ) of those ions that
leaves the central ion more exposed comparatively. Therefore, we tried
the alternative approach,where the M clustered structures
are sampled from the trajectory of the X(aq) AIMD simulations. This
strategy is the well-known inverse formula of the standard potential
distribution theorem,[56] but is implemented
with the PCM tool. Our physical argument is that clustered (H2O)X structures obtained with
this inverse procedure ought to relieve intracluster hydrogen bonding
and bury the X ion from contact with the water comparatively better
(see also refs (88) and (69)); therefore,
the severe PCM approximation might perform better. Indeed, that was
found to be the case, and the results discussed below (Figure ) for the cases of Br–(aq) and I–(aq) were obtained with this inverse
procedure.
Figure 8
(Black) Excess hydration free energy of X(aq). (Red) Outer-shell
contribution evaluated using the PCM[67] with
cluster configurations sampled from AIMD. (Green) Inner-shell free
energies.[70] (Blue) Polydispersity contribution
obtained from the Gaussian model for p(n) from AIMD data. In the cases of Br–(aq) and I–(aq), these results used the PCM in the inverse procedure
of eq . Otherwise,
results were obtained with direct eq .
(Black) Excess hydration free energy of X(aq). (Red) Outer-shell
contribution evaluated using the PCM[67] with
cluster configurations sampled from AIMD. (Green) Inner-shell free
energies.[70] (Blue) Polydispersity contribution
obtained from the Gaussian model for p(n) from AIMD data. In the cases of Br–(aq) and I–(aq), these results used the PCM in the inverse procedure
of eq . Otherwise,
results were obtained with direct eq .The treatment of long-range electrostatic interactions
in this
implementation of QCT is worth emphasizing. Though the sampling of
the bulk solution structures uses the preferred and commonplace periodic
boundary conditions in treating long-rang interactions, i.e., Ewald
electrostatics, the energetics that enter into the free-energy computations
reported do not use Ewald electrostatics.
Polydispersity and Net Hydration Free Energies
We have noted above that the polydispersity contribution is the
smallest of the three contributions to cluster QCT. It is conceptually
simplest and utilizes direct AIMD simulation in order to estimate pX(n). Thus, at this stage,
we display all three contributions and their combination (Table , then Figures and 9) and then proceed to their physical discussion.
Table 2
Hydration Free Energies of Anions
under Standard Conditionsa
X
μX(ex) (kcal/mol)
experiment* (kcal/mol)[89]
F–
–112
–111.1
HO–
–101
–102.8
Cl–
–82
–81.3
Br–
–73
–75.3
I–
–64
–65.7
These results are obtained from
exp(−βμX(ex)) = ∑pX(n)exp[K(0)ρH − ln pX (n), − β(μ(H(ex) − nμH(ex))] which rearranges eq and then acknowledges the normalization of pX(n). The root mean-squared difference of
these two columns is approximately 1.6 kcal/mol.
Figure 9
QCT evaluation of the
hydration free energy for HO–(aq), labeled as for Figure .
QCT evaluation of the
hydration free energy for HO–(aq), labeled as for Figure .These results are obtained from
exp(−βμX(ex)) = ∑pX(n)exp[K(0)ρH − ln pX (n), − β(μ(H(ex) − nμH(ex))] which rearranges eq and then acknowledges the normalization of pX(n). The root mean-squared difference of
these two columns is approximately 1.6 kcal/mol.Note again that these free energies span a chemical
scale of energies.
For the least strongly bound case (I–), the magnitudes
of the net free energies are in excess of 60 kcal/mol, roughly 100RT here. The net quantities (eq , then Figure and 9) are independent of n on that chemical energy scale. The agreement with the
experimental tabulation (Table ) is excellent and consistent across the anions treated. The
latter point shows that the agreement is not affected by an assignment
of a free-energy value for H+(aq) in the experimental tabulation.
Some Structural Observations
Though
this work has explicitly marshalled simulation calculations toward
evaluating QCT free energies, some structural observations are also
available.The cluster definition (Figure and Table ) based on H-atom donation, either singly or doubly,
works satisfactorily: small values estimated for ln⟨χ⟩ indicate that the defined clustering
volumes encompass the clustering observed from the AIMD for (H2O)X cases, especially for the
smaller values of n. For example, we see ln⟨χ3⟩ ≈ 0 with (H2O)3HO– (Table ). This result suggests simple H-bond donation, and that is supported
by the radial distribution functions in the (H2O)3HO– case (Figure ). This observation provides a simple rationale for
the remarkable success of QCT free-energy calculations for HO–(aq).[15,46,87] Thus, QCT for hydrated anions works better if the anion inner shell
is characterized by H-bond donation. This conclusion is consistent
with previous work[3,13,14] but focuses attention specifically on the XH radial distribution
functions (Figure ).Nevertheless, the structures of the clusters are different
from
the bulk aqueous solution case, as depicted by the XH rdfs (Figure ). For the clusters,
setting aside F– and HO–, asymmetric
hydration structures prevail (Figure ). Asymmetric inner-shell structures are moderated
in the bulk hydration environment but still evident.[93] For the bulk hydration cases overall, the XH rdfs suggest
the filling of inner shells to slightly higher average coordination
numbers than for the clusters. Using HO– again as
an example, the expected coordination number is about 3.8 (Figure ), which may be compared
to the work of ref (15) that estimated 3.7. The predictions of hydration structure agree
well with experimental estimates based on X-ray and neutron diffraction
and X-ray absorption fine structure studies (Table ). Additional information, including traditional
XO radial distribution functions, and further discussion can be found
in the Ph.D. thesis of Diego T. Gomez.[70]
Table 3
Hydration Structure of Anions from
the Peak of the Radial Distribution Function
X
rO|X (nm)
exp
F–
0.268
0.262–0.269[90]
HO–
0.260
0.265–0.270[91]
Cl–
0.324
0.310–0.320[90]
Br–
0.327
0.329–0.340[90]
I–
0.352
0.350–0.370[90,92]
Conclusions
The final free energies
(Figures and 9 and Table ) are accurate in comparison
with the standard tabulation in ref (89), and the final composite results of Figures and 9 are independent of n on the chemical energy
scale of relevance. Evaluations of the inner-shell and polydispersity
contributions of eq are key to the demonstration of this theoretical accuracy. Structural
information obtained by simulations shows that the distinctive asymmetry
of anion clusters is moderated in bulk aqueous solution.The
inner-shell free-energy contribution directly tracks available
experimental information on gas-phase cluster hydration equilibria,
and the polydispersity contribution is a direct structural observation
from the AIMD trajectory. Neither of those contributions is expected
to be sensitive to the potential of the phase.The excellent
theory–experiment agreement observed for those
inner-shell cluster contributions is a breakthrough that supports
the approximate remainder of the theory. The n-dependent
balance of the PCM-approximated, outer-shell contribution with the
remaining numerically exact contributions suggests that the PCM approximation
performs satisfactorily in these applications.The implementation
of this PCM-approximate outer-shell contribution
requires statistical thermodynamic processing for the AIMD results,
involving single-point electronic structure calculations of cluster
structures sampled from the AIMD trajectory. Since the required electronic
structure calculations treat only inner-shell clusters, this electronic
structure effort could employ arbitrarily accurate numerical theory.
In contrast to earlier recommendations, further effort in that direction
is not warranted here because of the observed excellent theory–experiment
agreement for the inner-shell cluster contribution.In summary,
the excellent agreement of anion hydration free energies
is due to quantum computations accurately checked with experiment,
together with the physical statistical thermodynamic theory that enables
these computations. Furthermore, the AIMD simulations reveal differences
in anion cluster structures compared with structures found in bulk
aqueous solution, with the latter having less asymmetry and higher
average coordination numbers. Finally, the ability to predict both
an accurate solvation free energy and an accurate solvation structure
of anions supports future work using QCT to understand the mechanisms
of ion transport and selectivity for the large diversity of anion-selective
transport proteins.
Authors: John L Fulton; Gregory K Schenter; Marcel D Baer; Christopher J Mundy; Liem X Dang; Mahalingam Balasubramanian Journal: J Phys Chem B Date: 2010-10-14 Impact factor: 2.991
Authors: Noam Agmon; Huib J Bakker; R Kramer Campen; Richard H Henchman; Peter Pohl; Sylvie Roke; Martin Thämer; Ali Hassanali Journal: Chem Rev Date: 2016-06-17 Impact factor: 60.622