Literature DB >> 35821148

Two new umbravirus-like associated RNAs (ulaRNAs) discovered in maize and johnsongrass from Ecuador.

Diego F Quito-Avila1,2, Edison G Reyes-Proaño3, Alma Mendoza4, Paolo Margaria5, Wulf Menzel5, Sayanta Bera6, Anne E Simon6.   

Abstract

Two new umbravirus-like associated RNAs (ulaRNAs) were found, respectively, in maize and Johnsongrass samples from Ecuador. The complete sequences consist of 3,053 and 3,025 nucleotides, respectively, and contain four open reading frames (ORFs). Their genome sequences were 58% identical to each other and 28 to 60% identical to the most closely related viruses. Phylogenetic analysis using full genome sequences and amino acid sequence of the RNA-dependent-RNA polymerase (RdRp) placed both sequences in a clade sharing the most recent common ancestor with ulaRNAs from sugarcane and maize, suggesting that they belong to a monophyletic grass-infecting lineage. Their terminal regions exhibit features common to umbraviruses and ulaRNAs.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.

Entities:  

Mesh:

Substances:

Year:  2022        PMID: 35821148     DOI: 10.1007/s00705-022-05525-4

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.685


  4 in total

1.  A new virus of the family Tombusviridae infecting sugarcane.

Authors:  Muhammad N Tahir; Stephen Bolus; Samuel C Grinstead; Sharon A McFarlane; Dimitre Mollov
Journal:  Arch Virol       Date:  2021-01-07       Impact factor: 2.574

2.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

3.  Identification of Novel 5' and 3' Translation Enhancers in Umbravirus-Like Coat Protein-Deficient RNA Replicons.

Authors:  Jingyuan Liu; Anne E Simon
Journal:  J Virol       Date:  2022-03-17       Impact factor: 6.549

4.  Metagenomics Analysis of the Wheat Virome Identifies Novel Plant and Fungal-Associated Viral Sequences.

Authors:  Carla Dizon Redila; Ved Prakash; Shahideh Nouri
Journal:  Viruses       Date:  2021-12-07       Impact factor: 5.048

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.