| Literature DB >> 35821129 |
Shih-Wen Chung1,2, Wei-Jie Huang1, Zhi-Hao Chen3, Shih-Hui Liu4.
Abstract
BACKGROUND: Blumea plants are widely distributed in the tropical areas of Asia, Africa, and Australia, especially tropical Asia. Limited studies left the taxonomy and infrageneric phylogeny of Blumea insubstantial. Here, a new species, Blumea chishangensis S. W. Chung, Z. H. Chen, S. H. Liu & W. J. Huang, from Taiwan is described, and an extended phylogeny is reconstructed to provide new perceptions of Blumea evolution.Entities:
Keywords: Blumea chishangensis; Compositae; Molecular phylogeny; Taiwan; Taxonomy
Year: 2022 PMID: 35821129 PMCID: PMC9276887 DOI: 10.1186/s40529-022-00350-z
Source DB: PubMed Journal: Bot Stud ISSN: 1817-406X Impact factor: 2.673
Fig. 1Blumea chishangensis. A habit; B basal leaves; C portion of inflorescence; D dissected capitula; E central floret; F outer floret; G stamens; H involucral bracts; I receptacle; J receptacle and achene
Fig. 2Blumea chishangensis. A habit; B basal leaves, upper surface; B' basal leaves, lower surface; C head; D, D" involucral bracts: E outer floret; F central floret; G stamens
The PCR primers, optimal annealing temperatures, and product sizes of ITS, trnL-trnF, and trnH-psbA regions in this study
| DNA regions | Primers | Primer Sequences (5′–> 3′) | Primer sources | Annealing temperature (°C) | Product size (bp) |
|---|---|---|---|---|---|
| Nuclear region | |||||
| ITS (ITS1 + 5.8S + ITS2) | ITS_4 ITS_5 | TCCTCCGCTTATTGATATGC GGAAGTAAAAGTCGTAACAAGG | White et al. White et al. | 55 | 662–666 |
ITS_L ITS_Scleria | TCGTAACAAGGTTTCCGTAGGTG ATGCTTAAACTCAGCGGGTA | Hsiao et al. 1994 Liu et al. | 60 | 662–666 | |
| Chloroplast regions | |||||
| | trnLF_c trnLF_f | CGAAATCGGTAGACGCTACG ATTTGAACTGGTGACACGAG | Taberlet et al. Taberlet et al. | 60 | 829–895 |
trnLF_c trnLF_d | CGAAATCGGTAGACGCTACG GGGGATAGAGGGACTTGAAC | Taberlet et al. Taberlet et al. | 60 | 466–471 | |
trnLF_f trnLF_e | ATTTGAACTGGTGACACGAG GGTTCAAGTCCCTCTATCCC | Taberlet et al. Taberlet et al. | 59 | 369–383 | |
| | psbAF trnH2 | GTTATGCATGAACGTAATGCTC CGCGCATGGTGGATTCACAATCC | Sang et al. Tate and Simpson | 64 | 460–494 |
trnH2 psbABL | CGCGCATGGTGGATTCACAATCC AGCTGCTTGGCCTGTAGTAG | Tate and Simpson This study | 63 | 505–637 | |
Characteristics, maximum parsimony statistics, and evolutionary model of the studied alignment
| DNA alignment | Number of outgroups/ | Length (bp) | Evolutionary model | Number of parsimony-informative sites [%] | CI/RI/RC/HI |
|---|---|---|---|---|---|
| All combined (ITS + | 4/49 | 2054 (667 + 856 + 531) | GTR + I + G | 385 (282 + 36 + 67) [18.74% (42.28% + 4.21% + 12.62%)] | 0.704/0.848/0.597/0.296 |
CI consistency index; RI retention index; RC rescaled consistency index; HI homoplasy index
Fig. 3Phylogenetic tree of 31 Blumea taxa based on ITS, trnL-trnF, and trnH-psbA regions using the maximum likelihood estimations. Bootstrap values (bs)/posterior probabilities (pp) are shown at the internal nodes if bs is greater than 50 or pp is greater than 0.70. The clades are noted by following Pornpongrungrueng et al. (2007, 2009). Blumea chishangensis, the newly described species in the present study, are highlighted in bold. The taxa denoted with stars are discussed in the text. The number after taxa refer to Additional file 1