| Literature DB >> 35818408 |
Liang-Jing Xia1,2, Liang-Ming Zhang1, Kun Yang1,3, Tong Chen4, Xian-Wen Ye5, Zi-Jun Yan1,4.
Abstract
Purpose: The possible mechanism of Xiyanping injection treatment COVID-19 is discussed through the network pharmacology.Entities:
Year: 2022 PMID: 35818408 PMCID: PMC9271007 DOI: 10.1155/2022/9152201
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.650
Figure 1Technological roadmap of Xiyanping injection.
93 genes collected.
| UniProt ID | Gene names |
|---|---|
|
| HSP90AA1 |
|
| AKT3 |
|
| PPIA |
|
| AAK1 |
|
| PIKFYVE |
|
| AKT2 |
|
| BSG |
|
| SIGMAR1 |
|
| GUK1 |
|
| PGA5 |
|
| CANX |
|
| HNRNPA1 |
|
| ABL2 |
|
| ANO6 |
|
| TMPRSS2 |
|
| FURIN |
|
| CTSL |
|
| C5 |
|
| ADAM17 |
|
| AKT1 |
|
| CAV2 |
|
| MAPK10 |
|
| AXL |
|
| CLEC4M |
|
| PDE5A |
|
| EEF1A1 |
|
| DHODH |
|
| MAPK8 |
|
| SERPINE1 |
|
| RB1 |
|
| S100A4 |
| P48506 | GCLC |
| Q16236 | NFE2L2 |
| P40763 | STAT3 |
| P08670 | VIM |
| P04040 | CAT |
| P12830 | CDH1 |
| Q15910 | EZH2 |
| P35968 | KDR |
| P28482 | MAPK1 |
| P27361 | MAPK3 |
| P04637 | TP53 |
| P15336 | ATF2 |
| P10415 | BCL2 |
| P11802 | CDK4 |
| P10145 | CXCL8 |
| P20711 | DDC |
| P49327 | FASN |
| P00441 | SOD1 |
| P01375 | TNF |
| P13500 | CCL2 |
| P29279 | CCN2 |
| Q9NSE2 | CISH |
| P19875 | CXCL2 |
| P11712 | CYP2C9 |
| P08684 | CYP3A4 |
| P08246 | ELANE |
| P17948 | FLT1 |
| P02751 | FN1 |
| P01100 | FOS |
| P24298 | GPT |
| P08721 | SPP1 |
| P15692 | VEGFA |
| P05231 | IL6 |
| P42574 | CASP3 |
| P09601 | HMOX1 |
| Q14790 | CASP8 |
| P55957 | BID |
| P05177 | CYP1A2 |
| P25445 | FAS |
| P48023 | FASLG |
| P05305 | EDN1 |
| P08253 | MMP2 |
| P14780 | MMP9 |
| P05164 | MPO |
| P16284 | PECAM1 |
| P37231 | PPARG |
| P04049 | RAF1 |
| P59594 | ACE2 |
| Q16665 | HIF1A |
| P01137 | TGFB1 |
| Q14145 | KEAP1 |
| P13647 | KRT5 |
| O14733 | MAP2K7 |
| P45984 | MAPK9 |
| P01024 | C3 |
| P60842 | EIF4A1 |
| P00390 | GSR |
| P00738 | HP |
| P05412 | JUN |
| P49841 | GSK3B |
| P01033 | TIMP1 |
| P19320 | VCAM1 |
Figure 2The structure of the compound.
Figure 360 genes.
Figure 493 genes.
Figure 5The PPI networks for 89 genes.
The top 20 genes for the degree value.
| PDB ID | Target gene | Degree | UniProt ID | Protein name |
|---|---|---|---|---|
| 6CCY | AKT1 | 75 | P31749 | RAC-alpha serine/threonine-protein kinase |
| 4KVP | TP53 | 65 | P04637 | Cellular tumor antigen p53 |
| 4TWT | TNF | 64 | P01375 | Tumor necrosis factor |
| 4ZS7 | IL6 | 62 | P05231 | Interleukin-6 |
| 6CKZ | CASP3 | 61 | P42574 | Caspase-3 |
| 6D3O | VEGFA | 59 | P15692 | Vascular endothelial growth factor A |
| 6QHD | STAT3 | 58 | P40763 | Signal transducer and activator of transcription 3 |
| 6MFA | JUN | 57 | P05412 | Transcription factor AP-1 |
| 5J6Z | FN1 | 55 | P02751 | Fibronectin |
| 2OW1 | MMP9 | 54 | P14780 | Matrix metalloproteinase-9 |
| 6GES | MAPK3 | 51 | P27361 | Mitogen-activated protein kinase 3 |
| 4H6J | HIF1A | 51 | Q16665 | Hypoxia-inducible factor 1-alpha |
| 2O72 | CDH1 | 49 | P12830 | Cadherin-1 |
| 2VV1 | PPARG | 49 | P37231 | Peroxisome proliferator-activated receptor gamma |
| 4U93 | HSP90AA1 | 47 | P07900 | Heat shock protein HSP 90-alpha |
| 3IFD | CCL2 | 46 | P13500 | C-C motif chemokine 2 |
| 5D14 | CXCL8 | 46 | P10145 | Interleukin-8 |
| 1CK7 | MMP2 | 44 | P08253 | 72 kDa type IV collagenase |
| 7P8W | CAT | 43 | P04040 | Catalase |
| 1FOS | FOS | 41 | P01100 | FOS G0S7 |
Figure 6The targets analysis.
Network and annotation.
| Network | Annotation |
|---|---|
| MyList | hsa05161|Hepatitis B|−41.7; R-HSA-1280215|Cytokine Signaling in Immune system|−39.3; ko04933|AGE-RAGE signaling pathway in diabetic complications|−38.8 |
| MyList_MCODE_ALL | hsa05161|Hepatitis B|−47.8; hsa05200|Pathways in cancer |−46.3; WP4666|Hepatitis B infection|−42.3 |
| MyList_SUB1_MCODE_1 | hsa05161|Hepatitis B|−22.8; hsa05200|Pathways in cancer |−20.8; ko04933|AGE-RAGE signaling pathway in diabetic complications|−20.5 |
| MyList_SUB1_MCODE_2 | hsa05200|Pathways in cancer|−24.0; hsa05161|Hepatitis B|−23.3; ko05212|Pancreatic cancer|−22.9 |
| MyList_SUB1_MCODE_3 | R-HSA-194315|Signaling by Rho GTPases|−3.5; R-HSA-1280215|Cytokine Signaling in Immune system|−3.5; R-HSA-9716542|Signaling by Rho GTPases, Miro GTPases, and RHOBTB3|−3.5 |
| MyList_SUB1_MCODE_4 | R-HSA-1280215|Cytokine Signaling in Immune system|−4.2 |
| MyList_SUB1_MCODE_5 | WP384|Apoptosis modulation by HSP70|−9.6; WP2507|Nanomaterial induced apoptosis|−9.5; M197|PID HIV NEF PATHWAY|−8.8 |
Figure 7(a) GO color by cluster; (b) GO color by p-value.
Figure 8(a) KEGG color by cluster; (b) KEGG color by cluster.
Figure 9TNF pathway.
Figure 10Binding energy heatmap of some compounds with a target protein.
Figure 11Xiyanping injection in combination with HSP90AA1.
Figure 12Organizational enrichment differences.
Figure 13Expression of HSP90AA1 in the human respiratory and circulatory system.
Figure 14Expression of CAT in the human respiratory and circulatory system.
Figure 15Expression of TNF in the human respiratory and circulatory system.
Figure 16Expression of FOS in the human respiratory and circulatory system.
Xiyanping injection has been included in the guide/expert consensus list.
| Serial number | Guideline/expert consensus name | Release year | Guidelines/expert consensus/formulation bodies |
|---|---|---|---|
|
| Hand-foot-mouth disease diagnosis and treatment guidelines (2010 edition) |
| National Health Commission of the People's Republic of China |
|
| Guidelines for the diagnosis and treatment of viral pneumonia in children in TCM |
| World Federation of Chinese Medicine societies |
|
| Expert consensus on integrated traditional Chinese and Western medicine treatment of acute fever in children |
| Ma Rong, Wang Xuefeng, etc. |
|
| Guideline for clinical diagnosis and treatment of pediatrics of traditional Chinese medicine hand-foot-mouth disease (revised) |
| China Association of Chinese Medicine |
|
| Clinical Diagnosis and Treatment Guidelines for Pediatrics of Traditional Chinese Medicine · Varicella (Revised) |
| China Association of Chinese Medicine |
|
| Chinese medicine pediatric clinical diagnosis and treatment guidelines bacillary dysentery (formulation) |
| China association of Chinese medicine |
|
| Expert Consensus on Diagnosis and Treatment of Mycoplasma Pneumoniae Pneumonia in Children by Integrated Traditional Chinese and Western Medicine (2017) |
| China Association of Chinese Medicine of Pediatric Pneumonia Alliance |
|
| Expert Consensus on Clinical Application of Xiyanping Injection (for Children) |
| Institute of Basic Research In Clinical Medicine/China Academy Of Chinese Medical Sciences |
|
| The new diagnosis and treatment scheme for coronavirus pneumonia (trial version 4) |
| National Health Commission of the People's Republic of China / National Administration of Traditional Chinese Medicine |
|
| The new diagnosis and treatment scheme for coronavirus pneumonia (trial version 5) |
| National Health Commission of the People's Republic of China/National Administration of Traditional Chinese Medicine |
|
| The new diagnosis and treatment scheme for coronavirus pneumonia (trial version 6) |
| National Health Commission of the People's Republic of China/National Administration of Traditional Chinese Medicine |
|
| The diagnosis and treatment scheme of new coronavirus pneumonia (trial version 7) |
| National Health Commission of the People's Republic of China/National Administration of Traditional Chinese Medicine |
|
| New coronavirus pneumonia diagnosis and treatment plan (trial version 8) |
| National Health Commission of the People's Republic of China/National Administration of Traditional Chinese Medicine |