Literature DB >> 35800103

An Optimized Tat/Rev Induced Limiting Dilution Assay for the Characterization of HIV-1 Latent Reservoirs.

Swarnima Mishra1, Yuvrajsinh Gohil1, Kavita Mehta1, Anish D'silva1, Afzal Amanullah1, Deepak Selvam1, Neelam Pargain1, Narendra Nala1, G N Sanjeeva2, Udaykumar Ranga1.   

Abstract

The administration of antiretroviral therapy (ART) leads to a rapid reduction in plasma viral load in HIV-1 seropositive subjects. However, when ART is suspended, the virus rebounds due to the presence of a latent viral reservoir. Several techniques have been developed to characterize this latent viral reservoir. Of the various assay formats available presently, the Tat/Rev induced limiting dilution assay (TILDA) offers the most robust and technically simple assay strategy. The TILDA formats reported thus far are limited by being selective to one or a few HIV-1 genetic subtypes, thus, restricting them from a broader level application. The novel TILDA, labelled as U-TILDA ('U' for universal), can detect all the major genetic subtypes of HIV-1 unbiasedly, and with comparable sensitivity of detection. U-TILDA is well suited to characterize the latent reservoirs of HIV-1 and aid in the formulation of cure strategies. Graphical abstract.
Copyright © 2022 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  HIV-1; HIV-1 latency; Latent reservoir; TILDA; Transcriptional silence

Year:  2022        PMID: 35800103      PMCID: PMC9081478          DOI: 10.21769/BioProtoc.4391

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  15 in total

1.  Long-term follow-up studies confirm the stability of the latent reservoir for HIV-1 in resting CD4+ T cells.

Authors:  Janet D Siliciano; Joleen Kajdas; Diana Finzi; Thomas C Quinn; Karen Chadwick; Joseph B Margolick; Colin Kovacs; Stephen J Gange; Robert F Siliciano
Journal:  Nat Med       Date:  2003-05-18       Impact factor: 53.440

2.  Impact of pre-amplification conditions on sensitivity of the tat/rev induced limiting dilution assay.

Authors:  Liam Châtel; Xuefen Yang; François Cholette; Hugo Soudeyns; Paul Sandstrom; Carole Lavigne
Journal:  Arch Virol       Date:  2018-06-07       Impact factor: 2.574

3.  ELDA: extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays.

Authors:  Yifang Hu; Gordon K Smyth
Journal:  J Immunol Methods       Date:  2009-06-28       Impact factor: 2.303

4.  Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy.

Authors:  T W Chun; L Stuyver; S B Mizell; L A Ehler; J A Mican; M Baseler; A L Lloyd; M A Nowak; A S Fauci
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

5.  Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy.

Authors:  D Finzi; M Hermankova; T Pierson; L M Carruth; C Buck; R E Chaisson; T C Quinn; K Chadwick; J Margolick; R Brookmeyer; J Gallant; M Markowitz; D D Ho; D D Richman; R F Siliciano
Journal:  Science       Date:  1997-11-14       Impact factor: 47.728

6.  RNA-mediated TILDA for improved cell capacity and enhanced detection of multiply-spliced HIV RNA.

Authors:  Hannah M Pezzi; Scott M Berry; David J Beebe; Rob Striker
Journal:  Integr Biol (Camb)       Date:  2017-11-13       Impact factor: 2.192

7.  Development of C-TILDA: A modified TILDA method for reservoir quantification in long term treated patients infected with subtype C HIV-1.

Authors:  Alessia Bertoldi; Vanessa D'Urbano; Isabella Bon; Annelies Verbon; Casper Rokx; Charles Boucher; Jeroen J A van Kampen; Rob A Gruters; Giorgio Gallinella; Leonardo Calza; Tokameh Mahmoudi; Elisa De Crignis; Maria Carla Re
Journal:  J Virol Methods       Date:  2019-11-19       Impact factor: 2.014

8.  A Novel Assay to Measure the Magnitude of the Inducible Viral Reservoir in HIV-infected Individuals.

Authors:  Francesco Andrea Procopio; Rémi Fromentin; Deanna A Kulpa; Jessica H Brehm; Anne-Gaelle Bebin; Matthew C Strain; Douglas D Richman; Una O'Doherty; Sarah Palmer; Frederick M Hecht; Rebecca Hoh; Richard J O Barnard; Michael D Miller; Daria J Hazuda; Steven G Deeks; Rafick-Pierre Sékaly; Nicolas Chomont
Journal:  EBioMedicine       Date:  2015-06-27       Impact factor: 8.143

Review 9.  New Frontiers in Measuring and Characterizing the HIV Reservoir.

Authors:  Shane D Falcinelli; Cristina Ceriani; David M Margolis; Nancie M Archin
Journal:  Front Microbiol       Date:  2019-12-18       Impact factor: 5.640

10.  An Improved Tat/Rev Induced Limiting Dilution Assay With Enhanced Sensitivity and Breadth of Detection.

Authors:  Kavita Mehta; Yuvrajsinh Gohil; Swarnima Mishra; Anish D'silva; Afzal Amanullah; Deepak Selvam; Neelam Pargain; Narendra Nala; G N Sanjeeva; Udaykumar Ranga
Journal:  Front Immunol       Date:  2021-08-05       Impact factor: 7.561

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