| Literature DB >> 35798833 |
Xiaoming Xue1, Zhenan Chen2, Haoqi Wu2, Handong Gao2.
Abstract
Near infrared hyperspectral imaging (NIR-HSI) spectroscopy can be a rapid, precise, low-cost and non-destructive way for wood identification. In this study, samples of five Guiboutia species were analyzed by means of NIR-HSI. Partial least squares discriminant analysis (PLS-DA) and support vector machine (SVM) were used after different data treatment in order to improve the performance of models. Transverse, radial, and tangential section were analyzed separately to select the best sample section for wood identification. The results obtained demonstrated that NIR-HSI combined with successive projections algorithm (SPA) and SVM can achieve high prediction accuracy and low computing cost. Pre-processing methods of SNV and Normalize can increase the prediction accuracy slightly, however, high modelling accuracy can still be achieved by raw pre-processing. Both models for the classification of G. conjugate, G. ehie and G. demeusei perform nearly 100% accuracy. Prediction for G. coleosperma and G. tessmannii were more difficult when using PLS-DA model. It is evidently clear from the findings that the transverse section of wood is more suitable for wood identification. NIR-HSI spectroscopy technique has great potential for Guiboutia species analysis.Entities:
Mesh:
Year: 2022 PMID: 35798833 PMCID: PMC9262927 DOI: 10.1038/s41598-022-15719-0
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.996
Figure 1Mean spectra for the transverse section of samples. CD = G. conjugate; AL = G. ehie; DM = G. demeusei; QZ = G. coleosperma; TS = G. tessmannii.
Figure 2Mean spectra for the radial section of samples. CD = G. conjugate; AL = G. ehie; DM = G. demeusei; QZ = G. coleosperma; TS = G. tessmannii.
Figure 3Mean spectra for the tangential section of samples. CD = G. conjugate; AL = G. ehie; DM = G. demeusei; QZ = G. coleosperma; TS = G. tessmannii.
Summary of the prediction results of PLS-DA model.
| Pre-processing | Prediction accuracy | |||
|---|---|---|---|---|
| Transverse section (%) | Radial section (%) | Tangential section (%) | ||
| Raw | 100 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 100 | 100 | 100 | |
| Normalize | 99.06 | 100 | 100 | |
| MSC | 100 | 100 | 100 | |
| Raw | 100 | 100 | 94.34 | |
| SNV | 100 | 100 | 83.96 | |
| SG smoothing | 100 | 100 | 93.40 | |
| Normalize | 100 | 100 | 89.62 | |
| MSC | 100 | 100 | 76.42 | |
| Raw | 97.17 | 100 | 100 | |
| SNV | 84.91 | 100 | 100 | |
| SG smoothing | 100 | 100 | 100 | |
| Normalize | 98.11 | 100 | 100 | |
| MSC | 82.08 | 99.06 | 100 | |
| Raw | 100 | 84.91 | 86.79 | |
| SNV | 100 | 81.13 | 90.57 | |
| SG smoothing | 100 | 82.08 | 87.74 | |
| Normalize | 100 | 79.25 | 87.74 | |
| MSC | 100 | 79.25 | 87.74 | |
| Raw | 90.57 | 90.57 | 71.70 | |
| SNV | 78.30 | 75.47 | 85.85 | |
| SG smoothing | 90.57 | 90.57 | 69.81 | |
| Normalize | 93.40 | 92.45 | 72.64 | |
| MSC | 82.08 | 75.47 | 88.68 | |
Optimal wavelengths of SPA treatment.
| Optimal wavelengths (nm) | RMSE | |
|---|---|---|
| Transverse section | 1145, 1227, 1341, 1428, 1479, 1589, 1685, 1758, 1866, 1901, 1957 | 0.39 |
| Radial section | 1085, 1145, 1206, 1327, 1384, 1435, 1479, 1589, 1692, 1758, 1873, 1957 | 0.36 |
| Tangential section | 1020, 1078, 1145, 1213, 1443, 1479, 1589, 1692, 1751, 1866, 1894, 1957 | 0.41 |
Summary of the prediction results of PLS-DA model (based on SPA treatment).
| Pre-processing | Prediction accuracy | |||
|---|---|---|---|---|
| Transverse section (%) | Radial section (%) | Tangential section (%) | ||
| Raw | 99.06 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 99.06 | 100 | 100 | |
| Normalize | 99.06 | 100 | 100 | |
| MSC | 100 | 100 | 100 | |
| Raw | 100 | 100 | 95.28 | |
| SNV | 99.06 | 98.11 | 67.92 | |
| SG smoothing | 99.06 | 99.06 | 93.40 | |
| Normalize | 100 | 100 | 88.68 | |
| MSC | 99.06 | 99.06 | 63.21 | |
| Raw | 96.23 | 100 | 100 | |
| SNV | 91.51 | 100 | 100 | |
| SG smoothing | 94.34 | 99.06 | 100 | |
| Normalize | 98.11 | 100 | 100 | |
| MSC | 89.62 | 100 | 100 | |
| Raw | 100 | 86.79 | 87.74 | |
| SNV | 99.06 | 89.62 | 89.62 | |
| SG smoothing | 100 | 96.23 | 87.74 | |
| Normalize | 100 | 87.74 | 87.74 | |
| MSC | 99.06 | 88.68 | 88.68 | |
| Raw | 89.62 | 78.30 | 74.53 | |
| SNV | 76.42 | 85.85 | 84.91 | |
| SG smoothing | 88.68 | 86.79 | 75.47 | |
| Normalize | 88.68 | 73.58 | 74.53 | |
| MSC | 77.36 | 85.85 | 88.68 | |
Summary of the prediction results of SVM model (based on SPA treatment).
| Pre-processing | Prediction accuracy | |||
|---|---|---|---|---|
| Transverse section (%) | Radial section (%) | Tangential section (%) | ||
| Raw | 100 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 100 | 100 | 100 | |
| Normalize | 100 | 100 | 100 | |
| MSC | 100 | 100 | 100 | |
| Raw | 100 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 100 | 100 | 100 | |
| Normalize | 100 | 100 | 97.17 | |
| MSC | 100 | 100 | 98.11 | |
| Raw | 100 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 99.06 | 100 | 100 | |
| Normalize | 97.17 | 100 | 100 | |
| MSC | 100 | 100 | 100 | |
| Raw | 100 | 100 | 100 | |
| SNV | 100 | 100 | 99.06 | |
| SG smoothing | 100 | 100 | 100 | |
| Normalize | 99.06 | 100 | 95.28 | |
| MSC | 100 | 100 | 99.06 | |
| Raw | 100 | 100 | 100 | |
| SNV | 99.06 | 100 | 100 | |
| SG smoothing | 97.17 | 100 | 97.17 | |
| Normalize | 91.51 | 96.23 | 94.34 | |
| MSC | 97.17 | 100 | 100 | |
Summary of the quality statistical parameters of PLS-DA and SVM model (transverse section).
| Model | Pre-processing | Tests | Sensitivity (%) | Specificity (%) | Misclassification rate (%) |
|---|---|---|---|---|---|
| PLS-DA | – | Training | 99.34 | 95.80 | 2.17 |
| Testing | 99.44 | 95.98 | 2.45 | ||
| SPA | Training | 99.34 | 96.12 | 2.74 | |
| Testing | 98.12 | 96.32 | 3.02 | ||
| SVM | – | Training | 99.82 | 99.96 | 0.19 |
| Testing | 99.82 | 99.96 | 0.19 | ||
| SPA | Training | 99.90 | 99.98 | 0.09 | |
| Testing | 100.00 | 100.00 | 0.00 |
Summary of the prediction results of SVM model.
| Pre-processing | Prediction accuracy | |||
|---|---|---|---|---|
| Transverse section (%) | Radial section (%) | Tangential section (%) | ||
| Raw | 100 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 100 | 100 | 100 | |
| Normalize | 100 | 100 | 100 | |
| MSC | 100 | 100 | 100 | |
| Raw | 100 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 100 | 100 | 100 | |
| Normalize | 100 | 100 | 97.17 | |
| MSC | 100 | 100 | 100 | |
| Raw | 100 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 100 | 100 | 100 | |
| Normalize | 98.11 | 100 | 100 | |
| MSC | 100 | 100 | 100 | |
| Raw | 100 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 100 | 100 | 100 | |
| Normalize | 96.23 | 76.42 | 96.23 | |
| MSC | 100 | 100 | 100 | |
| Raw | 99.06 | 100 | 100 | |
| SNV | 100 | 100 | 100 | |
| SG smoothing | 99.06 | 100 | 98.11 | |
| Normalize | 89.62 | 94.34 | 81.13 | |
| MSC | 100 | 100 | 100 | |
Figure 4Model prediction accuracy of three sections.
Figure 5Mixing matrix for results of five Guiboutia species with PLS-DA model. CD = G. conjugate; AL = G. ehie; DM = G. demeusei; QZ = G. coleosperma; TS = G. tessmannii.
Figure 6Mixing matrix for results of five Guiboutia species with PLS-DA model (based on SPA spectral treatment). CD = G. conjugate; AL = G. ehie; DM = G. demeusei; QZ = G. coleosperma; TS = G. tessmannii.
Figure 7Mixing matrix for results of five Guiboutia species with SVM model. CD = G. conjugate; AL = G. ehie; DM = G. demeusei; QZ = G. coleosperma; TS = G. tessmannii.
Figure 8Mixing matrix for results of five Guiboutia species with SVM model (based on SPA spectral treatment). CD = G. conjugate; AL = G. ehie; DM = G. demeusei; QZ = G. coleosperma; TS = G. tessmannii.