| Literature DB >> 35796865 |
Mohammad Mehrpouyan1,2, Hamed Zamanian3, Ghazal Mehri-Kakavand4, Mohamad Pursamimi4, Ahmad Shalbaf5, Mahdi Ghorbani6, Amirhossein Abbaskhani Davanloo7.
Abstract
The aim of this study is to classify patients suspected from COVID-19 to five stages as normal, early, progressive, peak, and absorption stages using radiomics approach based on lung computed tomography images. Lung CT scans of 683 people were evaluated. A set of statistical texture features was extracted from each CT image. The people were classified using the random forest algorithm as an ensemble method based on the decision trees outputs to five stages of COVID-19 disease. Proposed method attains the highest result with an accuracy of 93.55% (96.25% in normal, 74.39% in early, 100% in progressive, 82.19% in peak, and 96% in absorption stage) compared to the other three common classifiers. Radiomics method can be used for the classification of the stage of COVID-19 disease with good accuracy to help decide the length of time required to hospitalize patients, determine the type of treatment process required for patients in each category, and reduce the cost of care and treatment for hospitalized individuals.Entities:
Keywords: COVID-19 disease; Computed tomography; Radiomics; Stage
Mesh:
Year: 2022 PMID: 35796865 PMCID: PMC9261171 DOI: 10.1007/s13246-022-01140-4
Source DB: PubMed Journal: Phys Eng Sci Med ISSN: 2662-4729
Fig. 1Lung CT images illustrating histological pattern including a early stage (0–4 days) with ground-glass opacities, b progressive stage (5–8 days) with an increase in the crazy-paving pattern (interloper septal thickening), c peak stage (9–13 days) with consolidation, d absorption stage (≥ 14 days) with gradual resolution of consolidation without crazy-paving pattern (reticular). The images are related to the sagittal plane
The results of classification accuracy using RF, SVM, LDA, and ANN algorithms in terms of accuracy for the combination of 56 extracted features (Global, GLCM, GLRLM, GLSZM, and NGTDM)
| Algorithm | Overall accuracy (%) | Stage accuracy (%) | ||||
|---|---|---|---|---|---|---|
| Normal | Early stage | Progressive stage | Peak stage | Absorption stage | ||
| LDA | 80.10 (± 01.83) | 89.83 (± 01.23) | 38.64 (± 03.78) | 100.00 (± 00.00) | 53.39 (± 03.11) | 95.50 (± 01.04) |
| SVM | 90.20 (± 01.27) | 93.53 (± 01.03) | 69.33 (± 02.56) | 100.00 (± 00.00) | 82.19 (± 01.75) | 93.94 (± 01.04) |
| NN | 91.10 (± 02.03) | 98.40 (± 00.95) | 63.75 (± 04.45) | 100.00 (± 00.00) | 74.70 (± 02.96) | 94.06 (± 01.83) |
| RF | 93.55 (± 01.08) | 96.25 (± 00.89) | 74.39 (± 01.57) | 100.00 (± 00.00) | 82.19 (± 01.56) | 96.00 (± 01.42) |
For each model, average (± standard deviation) performance measure is reported
Fig. 2The results of the selection of the best number of trees in the RF algorithm with all combinations of features. The optimum number of trees is 65
Comparison of estimation of labels provided by RF algorithm with all combination of features against those assigned by the reference one (radiologist)
| Reference classifier (radiologist) | |||||
|---|---|---|---|---|---|
| Normal | Early stage | Progressive stage | Peak stage | Absorption stage | |
| Estimated labels by RF algorithm | |||||
| Normal | 308 | 4 | 0 | 0 | 1 |
| Early stage | 6 | 61 | 0 | 12 | 1 |
| Progressive stage | 0 | 0 | 108 | 0 | 0 |
| Peak stage | 3 | 16 | 0 | 60 | 2 |
| Absorption stage | 3 | 1 | 0 | 1 | 96 |
Comparison of the results of other studies on classification of severity of COVID-19 patients in compared with the presented approach from CT images
| Study | Methods | Results |
|---|---|---|
| Huang et al. [ | 2D U-Net deep learning | N/A. |
| Shan et al. [ | Deep learning | 85.1% |
| Tang et al. [ | Volume of GGO and RF probabilities | 87.5% |
| Shen et al. [ | Non trainable CV | N/A. |
| Shi et al. [ | COV with RF | 87.9% |
| Our work | RF with first and second statistical features | 93.55% |