| Literature DB >> 35794586 |
Amalia Spataru1, Paula van Dommelen2, Lilian Arnaud3, Quentin Le Masne3, Silvia Quarteroni1, Ekaterina Koledova4.
Abstract
BACKGROUND: Our aim was to develop a machine learning model, using real-world data captured from a connected auto-injector device and from early indicators from the first 3 months of treatment, to predict sub-optimal adherence to recombinant human growth hormone (r-hGH) in patients with growth disorders.Entities:
Keywords: Adherence; Auto-injector; Connected device; Digital health; Indicator; Machine learning; Recombinant human growth hormone
Mesh:
Substances:
Year: 2022 PMID: 35794586 PMCID: PMC9261072 DOI: 10.1186/s12911-022-01918-2
Source DB: PubMed Journal: BMC Med Inform Decis Mak ISSN: 1472-6947 Impact factor: 3.298
Fig. 1The easypod™ connect ecosystem for remote monitoring of therapy
Characteristics of the study population (N = 10,929)
| Characteristics | Mean (SD) or P50 (P25– P75) | n (%) |
|---|---|---|
| Age at start (years) | 9.7 (3.4) | |
| Gender | ||
| Boys | 6353 (58%) | |
| Girls | 4576 (42%) | |
Number of transmissions in first 3 months 0 ≥ 1 | 6042 (55%) 4887 (45%) | |
| Adherence in first 3 months (%) | 99 (94–100) | |
| Needle speed in first 3 months | ||
| Slow | 384 (4%) | |
| Medium | 5268 (48%) | |
| Fast | 5277 (48%) | |
| Injection time in first 3 months (seconds) | 8 (5–10) | |
| Injection depth in first 3 months | ||
| 4 mm | 1424 (13%) | |
| 6 mm | 6895 (63%) | |
| 8 mm | 2248 (21%) | |
| 10 mm | 362 (3%) | |
Number of dose changes in first 3 months 0 ≥ 1 | 8447 (23%) 2482 (77%) | |
| Adherence < 85% 3 months | 1964 (18%) | |
| Adherence < 85% 6 months | 2194 (20%) | |
| Adherence < 85% 9 months | 2419 (22%) |
SD standard deviation
F1-scores for the four machine learning models evaluated over three time periods
| Optimized Machine Learning Model | Mean (SD) F1-score (train set, fivefold cross-validation) | ||
|---|---|---|---|
| 3 months prediction | 6 months prediction | 9 months prediction | |
| Logistic regression | 0.797 (0.012) | 0.785 (0.016) | 0.768 (0.012) |
| Ordinal logistic regression | 0.798 (0.011) | 0.784 (0.013) | 0.768 (0.010) |
| Random forest | 0.807 (0.012) | 0.798 (0.018) | 0.780 (0.011) |
| Extra trees | 0.801 (0.017) | 0.783 (0.021) | 0.771 (0.01) |
SD, standard deviation
Fig. 2ROC curves to predict adherence to r-hGH therapy in the following 3, 6, and 9 months after starting r-hGH treatment. AUC, area under the curve; r-hGH, recombinant human growth hormone; ROC, receiver operating characteristic.
Fig. 3Random forest models to predict r-hGH therapy adherence in the following a 3, b 6, and c 9 months. The 85% threshold corresponds to approximately one missed injection per week; the effectiveness of treatment is known to be significantly affected below this value. r-hGH, recombinant human growth hormone.
Random forest model versus simple heuristic baseline model performances over three time periods, reported on the test set
| 3 months prediction | 6 months prediction | 9 months prediction | ||||
|---|---|---|---|---|---|---|
| Random forest | Baseline | Random forest | Baseline | Random forest | Baseline | |
| Sensitivity | 0.77 | 0.49 | 0.77 | 0.44 | 0.72 | 0.39 |
| Specificity | 0.81 | 0.96 | 0.81 | 0.97 | 0.80 | 0.97 |
| F1-score | 0.59 | 0.60 | 0.59 | 0.57 | 0.60 | 0.52 |
Fig. 4Relative importance of features to model output concerning r-hGH therapy adherence in the following a 3, b 6, and c 9 months after starting r-hGH treatment. SD, standard deviation; r-hGH, recombinant human growth hormone; SHAP, SHapley Additive exPlanations.
Boolean features which were significant under a Bonferroni-corrected p-value, together with their respective aggregated critical threshold
| Feature in the first 3 months (with respect to a threshold value) | Bonferroni- corrected p-value | ||
|---|---|---|---|
| 3 months prediction | 6 months prediction | 9 months prediction | |
| Mean adherence < 90% | < 0.001 | < 0.001 | < 0.001 |
| Adherence SD > 9% | < 0.001 | < 0.001 | < 0.001 |
| Number of transmissions = 0 | < 0.001 | < 0.001 | < 0.001 |
| Fast needle speed | < 0.001 | < 0.001 | < 0.001 |
| Age at start > 10 years old | < 0.001 | < 0.001 | < 0.001 |
| No dose changes | 0.002 | < 0.001 | – |
| Injection depth > 6 mm | 0.021 | < 0.001 | 0.002 |
| Gender (male) | 0.042 | 0.013 | – |
SD standard deviation