| Literature DB >> 35793307 |
Dorothy A Machalek1,2, Kaitlyn M Vette3, Marnie Downes4, John B Carlin4,5, Suellen Nicholson6, Rena Hirani7,8, David O Irving7,9, Iain B Gosbell7,10, Heather F Gidding3,11,12, Hannah Shilling2,4, Eithandee Aung1,2, Kristine Macartney3,10, John M Kaldor1.
Abstract
Rapidly identifying and isolating people with acute SARS-CoV-2 infection has been a core strategy to contain COVID-19 in Australia, but a proportion of infections go undetected. We estimated SARS-CoV-2 specific antibody prevalence (seroprevalence) among blood donors in metropolitan Melbourne following a COVID-19 outbreak in the city between June and September 2020. The aim was to determine the extent of infection spread and whether seroprevalence varied demographically in proportion to reported cases of infection. The design involved stratified sampling of residual specimens from blood donors (aged 20-69 years) in three postcode groups defined by low (<3 cases/1,000 population), medium (3-7 cases/1,000 population) and high (>7 cases/1,000 population) COVID-19 incidence based on case notification data. All specimens were tested using the Wantai SARS-CoV-2 total antibody assay. Seroprevalence was estimated with adjustment for test sensitivity and specificity for the Melbourne metropolitan blood donor and residential populations, using multilevel regression and poststratification. Overall, 4,799 specimens were collected between 23 November and 17 December 2020. Seroprevalence for blood donors was 0.87% (90% credible interval: 0.25-1.49%). The highest estimates, of 1.13% (0.25-2.15%) and 1.11% (0.28-1.95%), respectively, were observed among donors living in the lowest socioeconomic areas (Quintiles 1 and 2) and lowest at 0.69% (0.14-1.39%) among donors living in the highest socioeconomic areas (Quintile 5). When extrapolated to the Melbourne residential population, overall seroprevalence was 0.90% (0.26-1.51%), with estimates by demography groups similar to those for the blood donors. The results suggest a lack of extensive community transmission and good COVID-19 case ascertainment based on routine testing during Victoria's second epidemic wave. Residual blood donor samples provide a practical epidemiological tool for estimating seroprevalence and information on population patterns of infection, against which the effectiveness of ongoing responses to the pandemic can be assessed.Entities:
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Year: 2022 PMID: 35793307 PMCID: PMC9258843 DOI: 10.1371/journal.pone.0265858
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.752
Fig 1Count of COVID-19 case notifications between 1 June and 31 December 2020 in Victoria overall (grey bars) and among residents of metropolitan Melbourne aged 20–69 years (green bars), and timing of specimen collection.
Demographic characteristics of the study populations, by sampling stratum compared to Melbourne blood donors and residential populations aged 20–69 years.
| Variable | Overall sample | Low | Medium incidence | High incidence | Melbourne blood donor population | Melbourne resident population |
|---|---|---|---|---|---|---|
| 4,799 | 1,600 | 1,600 | 1,599 | 29,731 | 2,678,532 | |
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| Female | 2,400 (50.0) | 800 (50.0) | 800 (50.0) | 800 (50.0) | 14,202 (47.8) | 1,365,140 (51.0) |
| Male | 2,399 (50.0) | 800 (50.0) | 800 (50.0) | 799 (50.0) | 15,529 (52.2) | 1,313,392 (49.0) |
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| 20–29 years | 1,302 (27.1) | 401 (25.1) | 451 (28.2) | 450 (28.1) | 9,400 (31.6) | 643,911 (24.0) |
| 30–39 years | 1,309 (27.3) | 338 (21.1) | 462 (28.9) | 509 (31.8) | 7,950 (26.7) | 636,218 (23.8) |
| 40–49 years | 916 (19.1) | 295 (18.4) | 307 (19.2) | 314 (19.6) | 5,308 (17.9) | 556,067 (20.8) |
| 50–59 years | 760 (15.8) | 333 (20.8) | 225 (14.1) | 202 (12.6) | 4,458 (15.0) | 476,586 (17.8) |
| 60–69 years | 512 (10.7) | 233 (14.6) | 155 (9.7) | 124 (7.8) | 2,615 (8.8) | 365,750 (13.7) |
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| Quintile 1 (lowest) | 760 (15.8) | 0 (0.0) | 180 (11.3) | 580 (36.3) | 2,924 (9.8) | 426,472 (15.9) |
| Quintile 2 | 923 (19.2) | 180 (11.3) | 275 (17.2) | 468 (29.3) | 3,221 (10.8) | 317,970 (11.9) |
| Quintile 3 | 752 (15.7) | 157 (9.8) | 247 (15.4) | 348 (21.8) | 5,222 (17.6) | 493,540 (18.4) |
| Quintile 4 | 748 (15.6) | 334 (20.9) | 288 (18.0) | 126 (7.8) | 7,494 (25.2) | 586,731 (21.9) |
| Quintile 5 (highest) | 1597 (33.3) | 928 (58.0) | 610 (38.1) | 59 (3.7) | 1,0870 (36.6) | 853,819 (31.9) |
| Missing | 19 (0.4) | 1 (0.1) | 0 (0.0) | 18 (1.1) | – | – |
Sampling strata were defined by COVID-19 case notification data to 28 October 2020: <3 cases/1,000 population (Low incidence postcodes); 3–7 cases/1,000 population (Medium incidence postcodes); >7 cases/1,000 population (High incidence postcodes) (S1 Table).
Estimates based on counts of Lifeblood plasma donors in the 2019 calendar year for the included postcode groups (internal communications).
Estimates based on counts of persons place of usual residence from the ABS 2016 Census for the relevant postcodes.
Socioeconomic status was assigned from residential postcode based on ABS 2016 Index of relative socioeconomic disadvantage ranking within Victoria [11].
One postcode did not have an index score.
Crude and estimated SARS-CoV-2 seroprevalence and 90% credible intervals (CrI) for the Melbourne blood donor population (A) and metropolitan Melbourne resident population (B) aged 20–69 years.
| Crude estimates | Melbourne blood donor population | Melbourne resident population | |||
|---|---|---|---|---|---|
| Primary analysis | Sensitivity analysis | Primary analysis | Sensitivity analysis | ||
|
| 77 (1.60) | 0.87 (0.25–1.49) | 0.79 (0.20–1.43) | 0.90 (0.26–1.51) | 0.82 (0.21–1.46) |
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| Low incidence | 20 (1.25) | 0.73 (0.17–1.40) | 0.66 (0.13–1.33) | 0.73 (0.17–1.38) | 0.65 (0.13–1.32) |
| Medium incidence | 29 (1.81) | 0.97 (0.25–1.73) | 0.88 (0.19–1.68) | 0.99 (0.26–1.77) | 0.91 (0.20–1.71) |
| High incidence | 28 (1.75) | 1.06 (0.27–1.82) | 0.98 (0.20–1.76) | 1.06 (0.27–1.85) | 0.98 (0.20–1.79) |
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| Female | 35 (1.46) | 0.78 (0.22–1.42) | 0.71 (0.17–1.36) | 0.80 (0.23–1.44) | 0.73 (0.18–1.38) |
| Male | 42 (1.75) | 0.94 (0.25–1.68) | 0.85 (0.19–1.59) | 0.98 (0.26–1.72) | 0.89 (0.20–1.64) |
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| 20–29 years | 25 (1.92) | 0.94 (0.24–1.72) | 0.86 (0.19–1.64) | 1.00 (0.26–1.79) | 0.91 (0.20–1.72) |
| 30–39 years | 21 (1.60) | 0.88 (0.22–1.58) | 0.80 (0.18–1.52) | 0.89 (0.23–1.59) | 0.82 (0.18–1.53) |
| 40–49 years | 10 (1.09) | 0.73 (0.17–1.41) | 0.66 (0.14–1.36) | 0.75 (0.17–1.42) | 0.67 (0.14–1.37) |
| 50–59 years | 11 (1.45) | 0.79 (0.18–1.50) | 0.72 (0.15–1.43) | 0.84 (0.20–1.55) | 0.76 (0.16–1.48) |
| 60–69 years | 10 (1.95) | 0.86 (0.20–1.71) | 0.78 (0.16–1.64) | 0.91 (0.22–1.76) | 0.83 (0.17–1.69) |
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| Quintile 1 (lowest) | 13 (1.71) | 1.13 (0.25–2.15) | 1.04 (0.18–2.09) | 1.11 (0.25–2.10) | 1.03 (0.19–2.04) |
| Quintile 2 | 18 (1.95) | 1.11 (0.28–1.95) | 1.02 (0.20–1.90) | 1.10 (0.28–1.94) | 1.02 (0.20–1.90) |
| Quintile 3 | 14 (1.86) | 0.98 (0.24–1.84) | 0.90 (0.18–1.77) | 0.99 (0.24–1.85) | 0.91 (0.18–1.78) |
| Quintile 4 | 10 (1.34) | 0.77 (0.17–1.49) | 0.69 (0.13–1.43) | 0.75 (0.17–1.46) | 0.68 (0.13–1.41) |
| Quintile 5 (highest) | 22 (1.38) | 0.69 (0.14–1.39) | 0.62 (0.11–1.32) | 0.68 (0.14–1.37) | 0.61 (0.11–1.30) |
Estimation assumed a uniform prior distribution for seroprevalence.
Estimation assumed an alternative prior distribution, which focused on values for seroprevalence below 5%.
Low incidence postcodes: <3 cases/1,000 population; Medium incidence postcodes: 3–7 cases/1,000 population; High incidence postcodes: >7 cases/1,000 population (S1 Table).
Assigned from residential postcode based on ABS 2016 Index of relative socioeconomic disadvantage ranking within Victoria.
Fig 2Estimated SARS-CoV-2 seroprevalence and 90% credible intervals (CrI) for metropolitan Melbourne blood donors aged 20–69 years.
Estimation in the primary analysis assumed a uniform prior distribution for seroprevalence. Estimation in the sensitivity analysis assumed an alternative prior distribution, which focused on values for seroprevalence below 5%. Sampling strata were defined by COVID-19 case notification data to 28 October 2020: <3 cases/1,000 population (Low incidence postcodes); 3–7 cases/1,000 population (Medium incidence postcodes); >7 cases/1,000 population (High incidence postcodes) (S1 Table). Socioeconomic status was assigned from residential postcode based on ABS 2016 Index of relative socioeconomic disadvantage ranking within Victoria [9].
Fig 3Cumulative COVID-19 notifications for Melbourne residents aged 20–69 years from the start of the pandemic to 21 November 2020, by sampling stratum and demographic characteristics.
Sampling strata were defined by COVID-19 case notification data to 28 October 2020: <3 cases/1,000 population (Low incidence postcodes); 3–7 cases/1,000 population (Medium incidence postcodes); >7 cases/1,000 population (High incidence postcodes) (S1 Table). Socioeconomic status was assigned from residential postcode based on ABS 2016 Index of relative socioeconomic disadvantage ranking within Victoria [11].