Literature DB >> 35787035

Reply to Ocklenburg and Mundorf: The interplay of developmental bias and natural selection.

Iain G Johnston1,2,3,4, Kamaludin Dingle5, Sam F Greenbury6,7, Chico Q Camargo8, Jonathan P K Doye9, Sebastian E Ahnert4,6,10, Ard A Louis3.   

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Year:  2022        PMID: 35787035      PMCID: PMC9282226          DOI: 10.1073/pnas.2205299119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


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In our paper (1), we argue for strong bias in the arrival of variation toward phenotypes with simple descriptions. Evaluating evidence for such hypotheses about developmental bias is hard because one needs to answer counterfactual questions (2, 3). Not only “What do we observe in nature?” but also “What could have happened, but did not occur?” We therefore focused on relatively simple systems where such questions are potentially tractable. For protein complexes, this bias translates into a hugely enhanced probability of obtaining symmetric structures. For RNA structure and a gene regulatory network, the pattern of simpler outcomes is similarly pronounced, but has a less evocative interpretation. The interesting comment of Ocklenburg and Mundorf (4) provides an opportunity to discuss the big question of whether such developmental bias also carries through for evolution at larger lengths-scales. A good place to start may be the classic examples of large-scale structures that are generated by relatively simple algorithmic processes such as the fractal structure of lungs and vasculature, the shapes of plants (5), and, potentially, brain structure. While the morphological patterns observed on these scales are algorithmically simple, they are not necessarily symmetric (symmetry being a special case of the more general bias toward simplicity). The second big question, which lies at the heart of the comment (4), is whether nervous systems and brain architecture are examples where asymmetry has a functional advantage in biology. We see no reason to disagree. Indeed, complex/asymmetric structures abound across biological scales, from molecular machines, through cellular and tissue structures, to organismal body plans. In many cases, functional advantages of asymmetry can be determined. Even protein clusters show small deviations from perfect symmetry, in part because perfect symmetry creates unnatural chemical bonds and angles at the interfaces between the units (6, 7). Positive and negative adaptive pressure away from perfect symmetry may also hold for brains. Interestingly, functional hemispheric asymmetries are much stronger than anatomical asymmetries, suggesting a complex evolutionary coupling between function and structure (8). Finally, we predict two measurable consequences of this balancing between a general favoring of simplicity from the algorithmic nature of evolution and specific selective pressures on form. Firstly, earlier evolutionary morphologies should be simpler than later ones, where there has been time to explore a larger set of rarer potential variation that may, in turn, be more adaptive. Secondly, random mutations should lead to simpler structures, and possibly even recapitulate evolutionary histories. We cite examples from mammalian dentition (9) and leaf formation in angiosperms (10) in our discussion section, and we could include others such as protein complexes (11). Could these specific hypothesized effects, or other signatures of the interplay between bias in the arrival of variation and the adaptive pressures of natural selection, be observed in the evolution of brains? Surely such questions rank among the greatest scientific challenges of our time.
  10 in total

1.  Contingency, convergence and hyper-astronomical numbers in biological evolution.

Authors:  Ard A Louis
Journal:  Stud Hist Philos Biol Biomed Sci       Date:  2016-02-08

2.  The near-symmetry of proteins.

Authors:  Maayan Bonjack-Shterengartz; David Avnir
Journal:  Proteins       Date:  2015-02-06

3.  Keeping it simple: flowering plants tend to retain, and revert to, simple leaves.

Authors:  R Geeta; Liliana M Dávalos; André Levy; Lynn Bohs; Mathew Lavin; Klaus Mummenhoff; Neelima Sinha; Martin F Wojciechowski
Journal:  New Phytol       Date:  2011-11-16       Impact factor: 10.151

4.  Symmetry and asymmetry in biological structures.

Authors:  Sebastian Ocklenburg; Annakarina Mundorf
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-05       Impact factor: 12.779

5.  Hemispheric asymmetries: the comparative view.

Authors:  Sebastian Ocklenburg; Onur Güntürkün
Journal:  Front Psychol       Date:  2012-01-26

6.  The enigma of the near-symmetry of proteins: Domain swapping.

Authors:  Maayan Bonjack-Shterengartz; David Avnir
Journal:  PLoS One       Date:  2017-07-14       Impact factor: 3.240

7.  Phenotype Bias Determines How Natural RNA Structures Occupy the Morphospace of All Possible Shapes.

Authors:  Kamaludin Dingle; Fatme Ghaddar; Petr Šulc; Ard A Louis
Journal:  Mol Biol Evol       Date:  2022-01-07       Impact factor: 16.240

8.  Evolution of protein complexes by duplication of homomeric interactions.

Authors:  Jose B Pereira-Leal; Emmanuel D Levy; Christel Kamp; Sarah A Teichmann
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

9.  On the evolution and development of morphological complexity: A view from gene regulatory networks.

Authors:  Pascal F Hagolani; Roland Zimm; Renske Vroomans; Isaac Salazar-Ciudad
Journal:  PLoS Comput Biol       Date:  2021-02-24       Impact factor: 4.475

10.  Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution.

Authors:  Iain G Johnston; Kamaludin Dingle; Sam F Greenbury; Chico Q Camargo; Jonathan P K Doye; Sebastian E Ahnert; Ard A Louis
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-11       Impact factor: 12.779

  10 in total

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