Literature DB >> 3578274

An algorithm for automatic genotype elimination.

K Lange, T M Goradia.   

Abstract

Automatic genotype elimination algorithms for a single locus play a central role in making likelihood computations on human pedigree data feasible. We present a simple algorithm that is fully efficient in pedigrees without loops. This algorithm can be easily coded and has been instrumental in greatly reducing computing times for pedigree analysis. A contrived counter-example demonstrates that some superfluous genotypes cannot be excluded for inbred pedigrees.

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Year:  1987        PMID: 3578274      PMCID: PMC1684108     

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  4 in total

1.  A general model for the genetic analysis of pedigree data.

Authors:  R C Elston; J Stewart
Journal:  Hum Hered       Date:  1971       Impact factor: 0.444

2.  Extensions to pedigree analysis. V. Optimal calculation of Mendelian likelihoods.

Authors:  K Lange; M Boehnke
Journal:  Hum Hered       Date:  1983       Impact factor: 0.444

Review 3.  Linkage analysis in man.

Authors:  P M Conneally; M L Rivas
Journal:  Adv Hum Genet       Date:  1980

Review 4.  Segregation analysis.

Authors:  R C Elston
Journal:  Adv Hum Genet       Date:  1981
  4 in total
  15 in total

1.  An optimal algorithm for automatic genotype elimination.

Authors:  J R O'Connell; D E Weeks
Journal:  Am J Hum Genet       Date:  1999-12       Impact factor: 11.025

2.  A note on algorithms for genotype and allele elimination in complex pedigrees with incomplete genotype data.

Authors:  F X Du; I Hoeschele
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

Review 3.  Factors affecting statistical power in the detection of genetic association.

Authors:  Derek Gordon; Stephen J Finch
Journal:  J Clin Invest       Date:  2005-06       Impact factor: 14.808

4.  The cluster variation method for efficient linkage analysis on extended pedigrees.

Authors:  Cornelis A Albers; Martijn A R Leisink; Hilbert J Kappen
Journal:  BMC Bioinformatics       Date:  2006-03-20       Impact factor: 3.169

5.  Haplotype inference in general pedigrees using the cluster variation method.

Authors:  Cornelis A Albers; Tom Heskes; Hilbert J Kappen
Journal:  Genetics       Date:  2007-07-29       Impact factor: 4.562

6.  Localization of an ataxia-telangiectasia locus to a 3-cM interval on chromosome 11q23: linkage analysis of 111 families by an international consortium.

Authors:  T Foroud; S Wei; Y Ziv; E Sobel; E Lange; A Chao; T Goradia; Y Huo; A Tolun; L Chessa; P Charmley; O Sanal; N Salman; C Julier; P Concannon; C McConville; A M Taylor; Y Shiloh; S K Lange; R A Gatti
Journal:  Am J Hum Genet       Date:  1991-12       Impact factor: 11.025

7.  A heterozygote-homozygote test of Hardy-Weinberg equilibrium.

Authors:  Jin J Zhou; Kenneth Lange; Jeanette C Papp; Janet S Sinsheimer
Journal:  Eur J Hum Genet       Date:  2009-04-15       Impact factor: 4.246

8.  Family-based association tests for genomewide association scans.

Authors:  Wei-Min Chen; Goncalo R Abecasis
Journal:  Am J Hum Genet       Date:  2007-09-18       Impact factor: 11.025

9.  Nonparametric simulation-based statistics for detecting linkage in general pedigrees.

Authors:  S Davis; M Schroeder; L R Goldin; D E Weeks
Journal:  Am J Hum Genet       Date:  1996-04       Impact factor: 11.025

Review 10.  Haplotyping methods for pedigrees.

Authors:  Guimin Gao; David B Allison; Ina Hoeschele
Journal:  Hum Hered       Date:  2009-01-27       Impact factor: 0.444

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