Literature DB >> 35780386

An Outsider's Perspective on Why We Climb Mountains and Why Projects Like the i5k Matter.

David C Molik1.   

Abstract

Initiatives like the i5k are creating evermore genome assemblies. These initiatives are resource heavy, and their justifications and economics deserve attention. Scientifically, these initiatives are important, paving the way for cross-species analysis, requiring the building of new computational analysis and tools, and creating other new resources. However, an open question remains of how we quantitively measure the impact of genomes, and by extension these initiatives. This forum article discusses one such method which is to look at the publications about a species over time, however, this method does not show any signal from a published genome, leaving an open question of how to measure impact. Published by Oxford University Press on behalf of Entomological Society of America 2022.

Entities:  

Keywords:  computer science; genetic research/engineering; genetics

Mesh:

Year:  2022        PMID: 35780386      PMCID: PMC9250708          DOI: 10.1093/jisesa/ieac038

Source DB:  PubMed          Journal:  J Insect Sci        ISSN: 1536-2442            Impact factor:   2.066


  11 in total

1.  1000 Genomes project.

Authors:  Nayanah Siva
Journal:  Nat Biotechnol       Date:  2008-03       Impact factor: 54.908

2.  The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

Authors:  Heather Bracken-Grissom; Allen G Collins; Timothy Collins; Keith Crandall; Daniel Distel; Casey Dunn; Gonzalo Giribet; Steven Haddock; Nancy Knowlton; Mark Martindale; Mónica Medina; Charles Messing; Stephen J O'Brien; Gustav Paulay; Nicolas Putnam; Timothy Ravasi; Greg W Rouse; Joseph F Ryan; Anja Schulze; Gert Wörheide; Maja Adamska; Xavier Bailly; Jesse Breinholt; William E Browne; M Christina Diaz; Nathaniel Evans; Jean-François Flot; Nicole Fogarty; Matthew Johnston; Bishoy Kamel; Akito Y Kawahara; Tammy Laberge; Dennis Lavrov; François Michonneau; Leonid L Moroz; Todd Oakley; Karen Osborne; Shirley A Pomponi; Adelaide Rhodes; Scott R Santos; Nori Satoh; Robert W Thacker; Yves Van de Peer; Christian R Voolstra; David Mark Welch; Judith Winston; Xin Zhou
Journal:  J Hered       Date:  2014 Jan-Feb       Impact factor: 2.645

3.  Creating a buzz about insect genomes.

Authors:  Gene E Robinson; Kevin J Hackett; Mary Purcell-Miramontes; Susan J Brown; Jay D Evans; Marian R Goldsmith; Daniel Lawson; Jack Okamuro; Hugh M Robertson; David J Schneider
Journal:  Science       Date:  2011-03-18       Impact factor: 47.728

Review 4.  It's more than stamp collecting: how genome sequencing can unify biological research.

Authors:  Stephen Richards
Journal:  Trends Genet       Date:  2015-05-20       Impact factor: 11.639

Review 5.  The Genome 10K Project: a way forward.

Authors:  Klaus-Peter Koepfli; Benedict Paten; Stephen J O'Brien
Journal:  Annu Rev Anim Biosci       Date:  2015       Impact factor: 8.923

6.  Database resources of the National Center for Biotechnology Information.

Authors:  Eric W Sayers; Jeffrey Beck; Evan E Bolton; Devon Bourexis; James R Brister; Kathi Canese; Donald C Comeau; Kathryn Funk; Sunghwan Kim; William Klimke; Aron Marchler-Bauer; Melissa Landrum; Stacy Lathrop; Zhiyong Lu; Thomas L Madden; Nuala O'Leary; Lon Phan; Sanjida H Rangwala; Valerie A Schneider; Yuri Skripchenko; Jiyao Wang; Jian Ye; Barton W Trawick; Kim D Pruitt; Stephen T Sherry
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

7.  The road to 10,000 plant genomes.

Authors:  Alex D Twyford
Journal:  Nat Plants       Date:  2018-06       Impact factor: 15.793

8.  Over-optimization of academic publishing metrics: observing Goodhart's Law in action.

Authors:  Michael Fire; Carlos Guestrin
Journal:  Gigascience       Date:  2019-06-01       Impact factor: 6.524

9.  The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research.

Authors:  Anna K Childers; Scott M Geib; Sheina B Sim; Monica F Poelchau; Brad S Coates; Tyler J Simmonds; Erin D Scully; Timothy P L Smith; Christopher P Childers; Renee L Corpuz; Kevin Hackett; Brian Scheffler
Journal:  Insects       Date:  2021-07-09       Impact factor: 2.769

10.  Why sequence all eukaryotes?

Authors:  Mark Blaxter; John M Archibald; Anna K Childers; Jonathan A Coddington; Keith A Crandall; Federica Di Palma; Richard Durbin; Scott V Edwards; Jennifer A M Graves; Kevin J Hackett; Neil Hall; Erich D Jarvis; Rebecca N Johnson; Elinor K Karlsson; W John Kress; Shigehiro Kuraku; Mara K N Lawniczak; Kerstin Lindblad-Toh; Jose V Lopez; Nancy A Moran; Gene E Robinson; Oliver A Ryder; Beth Shapiro; Pamela S Soltis; Tandy Warnow; Guojie Zhang; Harris A Lewin
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-25       Impact factor: 12.779

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