Literature DB >> 35775870

Retinal OCT Denoising with Pseudo-Multimodal Fusion Network.

Dewei Hu1, Joseph D Malone2, Yigit Atay1, Yuankai K Tao2, Ipek Oguz1.   

Abstract

Optical coherence tomography (OCT) is a prevalent imaging technique for retina. However, it is affected by multiplicative speckle noise that can degrade the visibility of essential anatomical structures, including blood vessels and tissue layers. Although averaging repeated B-scan frames can significantly improve the signal-to-noise-ratio (SNR), this requires longer acquisition time, which can introduce motion artifacts and cause discomfort to patients. In this study, we propose a learning-based method that exploits information from the single-frame noisy B-scan and a pseudo-modality that is created with the aid of the self-fusion method. The pseudo-modality provides good SNR for layers that are barely perceptible in the noisy B-scan but can over-smooth fine features such as small vessels. By using a fusion network, desired features from each modality can be combined, and the weight of their contribution is adjustable. Evaluated by intensity-based and structural metrics, the result shows that our method can effectively suppress the speckle noise and enhance the contrast between retina layers while the overall structure and small blood vessels are preserved. Compared to the single modality network, our method improves the structural similarity with low noise B-scan from 0.559 ± 0.033 to 0.576 ± 0.031.

Entities:  

Keywords:  Denoising; Optical coherence tomography; Self-fusion

Year:  2020        PMID: 35775870      PMCID: PMC9241435          DOI: 10.1007/978-3-030-63419-3_13

Source DB:  PubMed          Journal:  Ophthalmic Med Image Anal (2020)


  11 in total

1.  Image quality assessment: from error visibility to structural similarity.

Authors:  Zhou Wang; Alan Conrad Bovik; Hamid Rahim Sheikh; Eero P Simoncelli
Journal:  IEEE Trans Image Process       Date:  2004-04       Impact factor: 10.856

2.  Array detection for speckle reduction in optical coherence microscopy.

Authors:  J M Schmitt
Journal:  Phys Med Biol       Date:  1997-07       Impact factor: 3.609

3.  Three dimensional data-driven multi scale atomic representation of optical coherence tomography.

Authors:  Raheleh Kafieh; Hossein Rabbani; Ivan Selesnick
Journal:  IEEE Trans Med Imaging       Date:  2015-05       Impact factor: 10.048

4.  VoxelMorph: A Learning Framework for Deformable Medical Image Registration.

Authors:  Guha Balakrishnan; Amy Zhao; Mert R Sabuncu; John Guttag; Adrian V Dalca
Journal:  IEEE Trans Med Imaging       Date:  2019-02-04       Impact factor: 10.048

5.  Speckle noise reduction in optical coherence tomography images based on edge-sensitive cGAN.

Authors:  Yuhui Ma; Xinjian Chen; Weifang Zhu; Xuena Cheng; Dehui Xiang; Fei Shi
Journal:  Biomed Opt Express       Date:  2018-10-02       Impact factor: 3.732

6.  Retinal vessel diameter measurements by spectral domain optical coherence tomography.

Authors:  Yanling Ouyang; Qing Shao; Dirk Scharf; Antonia M Joussen; Florian M Heussen
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2014-08-17       Impact factor: 3.117

Review 7.  Detecting Structural Progression in Glaucoma with Optical Coherence Tomography.

Authors:  Andrew J Tatham; Felipe A Medeiros
Journal:  Ophthalmology       Date:  2017-12       Impact factor: 12.079

8.  Multi-Atlas Segmentation with Joint Label Fusion.

Authors:  Hongzhi Wang; Jung W Suh; Sandhitsu R Das; John B Pluta; Caryne Craige; Paul A Yushkevich
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2012-06-26       Impact factor: 6.226

9.  Self-fusion for OCT noise reduction.

Authors:  Ipek Oguz; Joseph D Malone; Yigit Atay; Yuankai K Tao
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-03-10

10.  A Deep Learning Approach to Denoise Optical Coherence Tomography Images of the Optic Nerve Head.

Authors:  Sripad Krishna Devalla; Giridhar Subramanian; Tan Hung Pham; Xiaofei Wang; Shamira Perera; Tin A Tun; Tin Aung; Leopold Schmetterer; Alexandre H Thiéry; Michaël J A Girard
Journal:  Sci Rep       Date:  2019-10-08       Impact factor: 4.379

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