Literature DB >> 35762414

Dissecting the ferroptosis-related prognostic biomarker and immune microenvironment of driver gene-negative lung cancer.

Rui Zhou1, Hao-Chuan Ma1, Yi-Hong Liu2, Xian Chen1,2, Xue-Song Chang2, Ya-Dong Chen2, Li-Rong Liu2, Yong Li2, Yan-Juan Zhu1,2,3,4, Hai-Bo Zhang2,3,4,5.   

Abstract

Despite significant advances in targeted and immune therapy for non-small cell lung cancer (NSCLC), effective therapies for wild-type epidermal growth factor receptor/anaplastic lymphoma kinase (EGFR/ALKWT) with low expression of programmed death ligand-1 (PD-L1) NSCLC remain elusive. Numerous studies have shown that ferroptosis plays an essential role in antitumor activity. To identify the molecular regulation patterns associated with ferroptosis, 351 EGFR/ALKWT NSCLC samples with low-level PD-L1 were extracted from The Cancer Genome Atlas (TCGA) and clustered using the k-means clustering technique. The two clusters associated with ferroptosis showed significantly different prognoses. In total, 169 differential expression genes (DEGs) were identified. Cluster differential analysis revealed that Cluster 1 had a significantly poorer overall survival (OS) and was associated with more negative immune regulation. In addition, TCGA samples were randomly assigned in a 7:3 ratio to a training group or testing group. A signature of eight genes associated with ferroptosis was established in the training cohort using DEGs and validated in the test cohort and three independent cohorts (GSE72049, GSE41271, and GSE50081). The 5-year area under the curve (AUC) was 0.713, which was significantly higher than that of other predictors, including TNM stage and age. Furthermore, the risk score was associated with immune function, immune infiltration, and immunotherapy response, with high-risk patients having a worse prognosis, an immune-suppressing phenotype, and a poor response to immune checkpoint inhibitors. This study aims to contribute to our understanding of the biological role of ferroptosis in EGFR/ALKWT NSCLC with low-level PD-L1, laying the groundwork for the development of novel therapeutic strategies.

Entities:  

Keywords:  EGFR/ALKWT; Ferroptosis; NSCLC; immune microenvironment; low PD-L1 expression; prognosis

Mesh:

Substances:

Year:  2022        PMID: 35762414      PMCID: PMC9493762          DOI: 10.1177/15353702221102872

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN: 1535-3699


  49 in total

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Journal:  Cancer Res       Date:  2006-12-15       Impact factor: 12.701

2.  The release and activity of HMGB1 in ferroptosis.

Authors:  Qirong Wen; Jiao Liu; Rui Kang; Borong Zhou; Daolin Tang
Journal:  Biochem Biophys Res Commun       Date:  2019-01-25       Impact factor: 3.575

3.  Carboplatin and pemetrexed with or without pembrolizumab for advanced, non-squamous non-small-cell lung cancer: a randomised, phase 2 cohort of the open-label KEYNOTE-021 study.

Authors:  Corey J Langer; Shirish M Gadgeel; Hossein Borghaei; Vassiliki A Papadimitrakopoulou; Amita Patnaik; Steven F Powell; Ryan D Gentzler; Renato G Martins; James P Stevenson; Shadia I Jalal; Amit Panwalkar; James Chih-Hsin Yang; Matthew Gubens; Lecia V Sequist; Mark M Awad; Joseph Fiore; Yang Ge; Harry Raftopoulos; Leena Gandhi
Journal:  Lancet Oncol       Date:  2016-10-10       Impact factor: 41.316

4.  Role of INSL4 Signaling in Sustaining the Growth and Viability of LKB1-Inactivated Lung Cancer.

Authors:  Rongqiang Yang; Steven W Li; Zirong Chen; Xin Zhou; Wei Ni; Dongtao A Fu; Jianrong Lu; Frederic J Kaye; Lizi Wu
Journal:  J Natl Cancer Inst       Date:  2019-07-01       Impact factor: 13.506

5.  iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.

Authors:  Antonio Mora; Ian M Donaldson
Journal:  BMC Bioinformatics       Date:  2011-11-24       Impact factor: 3.169

6.  Acquired resistance to EGFR tyrosine kinase inhibitors is mediated by the reactivation of STC2/JUN/AXL signaling in lung cancer.

Authors:  Yi-Nan Liu; Meng-Feng Tsai; Shang-Gin Wu; Tzu-Hua Chang; Tzu-Hsiu Tsai; Chien-Hung Gow; Yih-Leong Chang; Jin-Yuan Shih
Journal:  Int J Cancer       Date:  2019-06-25       Impact factor: 7.396

7.  Stanniocalcin-2 (STC2): A potential lung cancer biomarker promotes lung cancer metastasis and progression.

Authors:  Sang-su Na; Mark Borris Aldonza; Hye-Jin Sung; Yong-In Kim; Yeon Sung Son; Sukki Cho; Je-Yoel Cho
Journal:  Biochim Biophys Acta       Date:  2014-11-14

8.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

Review 9.  Hallmarks of response, resistance, and toxicity to immune checkpoint blockade.

Authors:  Golnaz Morad; Beth A Helmink; Padmanee Sharma; Jennifer A Wargo
Journal:  Cell       Date:  2021-10-07       Impact factor: 66.850

10.  Synthetic lethal screening identifies compounds activating iron-dependent, nonapoptotic cell death in oncogenic-RAS-harboring cancer cells.

Authors:  Wan Seok Yang; Brent R Stockwell
Journal:  Chem Biol       Date:  2008-03
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