| Literature DB >> 35758212 |
Weiwei An1, Katrina J Holly1, Alessio Nocentini2, Ryan D Imhoff1, Chad S Hewitt1, Nader S Abutaleb3,4, Xufeng Cao1, Mohamed N Seleem2,4, Claudiu T Supuran3, Daniel P Flaherty1,5,6.
Abstract
Vancomycin-resistant enterococci (VRE), consisting of pathogenic Enterococcus faecalis and E. faecium, is a leading cause of hospital-acquired infections (HAIs). We recently repurposed the FDA-approved human carbonic anhydrase (CA) inhibitor acetazolamide (AZM) against VRE agent with the likely mechanism of action for the molecules being inhibition of one, or both, of the bacterial CA isoforms expressed in VRE. To elucidate how inhibitor binding to the enzymes relates to MIC, we further characterised the inhibition constants (Ki) against the E. faecium α-CA (Efα-CA) and γ-CA (Efγ-CA), as well as against human CA I (hCAI) and human CA II (hCAII) to assess selectivity. We have also utilised homology modelling and molecular dynamics (MD) simulations to gain a better understanding of the potential interactions the molecules are making with the targets. In this paper, we elaborate on the SAR for the AZM analogs as it pertains to MIC and Ki for each CA.Entities:
Keywords: Carbonic anhydrase inhibitors; antibiotics; drug repurposing; vancomycin-resistant Enterococcus
Mesh:
Substances:
Year: 2022 PMID: 35758212 PMCID: PMC9246096 DOI: 10.1080/14756366.2022.2092729
Source DB: PubMed Journal: J Enzyme Inhib Med Chem ISSN: 1475-6366 Impact factor: 5.756
Inhibition constants (Ki) against the α-EfCA, γ-EfCA, hCAI and hCAII.
| Cmpd | Structures | ||||
|---|---|---|---|---|---|
| hCA Ia | hCA IIa | ||||
|
|
| 56.7 | 322.8 | 250 | 12.5 |
|
|
| 37.5 | 250.1 | 235.4 | 37.2 |
|
|
| 23.7 | 218.4 | 179.7 | 30.9 |
|
|
| 29.8 | 440.8 | 167.3 | 9.5 |
|
|
| 50.1 | 325.3 | 212.5 | 22.3 |
|
|
| 62.7 | 279 | 215.1 | 55.6 |
|
|
| 69.6 | 389.5 | 230.9 | 7.3 |
|
|
| 78.8 | 631.7 | 327.5 | 22.7 |
|
|
| 36.2 | 192.7 | 156.9 | 24.6 |
|
|
| 27.2 | 285.9 | 125.2 | 41.5 |
|
|
| 9.8 | 194.9 | 76.5 | 26.2 |
|
|
| 49.3 | 131.1 | 63.3 | 20.2 |
|
|
| 44.5 | 239.6 | 117.3 | 47.7 |
|
|
| 29.6 | 345.3 | 151.9 | 26 |
|
|
| 56.2 | 94.8 | 108.6 | 29 |
|
|
| 11.7 | 310.5 | 372.4 | 7.6 |
|
|
| 18.4 | 408.4 | 77.8 | 4.9 |
|
|
| 21.9 | 232.8 | 86.3 | 19.4 |
|
|
| 14.5 | 304.8 | 58.7 | 24.5 |
|
|
| 39.3 | 244.6 | 190.2 | 10.2 |
|
|
| 66.9 | 345.9 | 945.9 | 0.32 |
|
|
| 6.4 | 148.4 | 855.3 | 8.1 |
|
|
| 38.1 | 92.8 | 64.7 | 58.1 |
|
|
| 29.5 | 110.6 | 53.4 | 20.9 |
|
|
| 20.1 | 56.4 | 14 | 0.9 |
|
|
| 81.5 | 64.7 | 9.6 | 1.6 |
|
|
| 165.2 | 504.5 | 701 | 47.2 |
|
|
| 117.3 | 398 | 1135 | 78.4 |
|
|
| 163.5 | 282 | 1623 | 103.8 |
|
|
| 374.7 | 1129 | 465.2 | 97.2 |
|
|
| 179.7 | 528.6 | 1331 | 67.7 |
aKi data for analogs against hCA isoforms previously reported.
Figure 1.Ligand poses for AZM, 26, and 29 were generated by MD simulation in the active site of the Efα-CA at convergences of 10 ns, 41 ns, and 63 ns, respectively. Ligands, residues, and waters important for ligand interactions are shown as sticks. Polar hydrogens are shown for clarity of proposed hydrogen bond interactions (yellow dashed lines). Homology model of Efα-CA (gray ribbons) was used as the model. Catalytic Zn2+ is shown as a dark blue sphere. (A) Generated pose for AZM (green sticks) in the Efα-CA site. (B) Generated pose for 26 (teal sticks) in the Efα-CA site. (C) Generated pose for 29 (olive sticks) in the Efα-CA site. Images were generated using PyMol.
Figure 2.Ligand poses for AZM, 20, and 21 were generated by MD simulation in the active site of the Efα-CA at convergences of 10 ns, 10 ns, and 48 ns, respectively. Ligands, residues, and waters important for ligand interactions are shown as sticks. Polar hydrogens are shown for clarity of proposed hydrogen bond interactions (yellow dashed lines). Homology model of Efα-CA (gray ribbons) was used as the model. Catalytic Zn2+ is shown as dark blue sphere. (A) Generated pose for AZM (green sticks) in the Efα-CA site. (B) Generated pose for 20 (cyan sticks) in the Efα-CA site. (C) Generated pose for 21 (orange sticks) in the Efα-CA site. (D) Generated pose for 20 (cyan sticks) with protein surface representation in the Efα-CA site. (E) Generated pose for 21 (orange sticks) with protein surface representation in the Efα-CA site. Images were generated using PyMol.