Literature DB >> 35751751

Orrella daihaiensis sp. nov., a bacterium isolated from Daihai Lake in Inner Mongolia.

Kai Jiang1,2, Bo Yuan3,4, ChunLing Cao5, ChenYing Zhang3, Yang Liu3, XiaoHu Hai3, RuoXuan Li3, KangYuan Qian3, HongZhen Yang3.   

Abstract

A novel aerobic, Gram-staining-negative, non-motile, short-rod-shaped strain, designated f23T, was obtained from Daihai Lake, Inner Mongolia, Republic of China. 16S rRNA gene sequences analysis showed that f23T belongs to the genus Orrella and is most closely related to Orrella marina H-Z20T with 98.35% sequence similarity. The strain was oxidase positive, catalase positive and had well growth at pH 6.5-8.5, at temperature 28-40 °C and at 0-4.5% (w/v) NaCl. Colonies incubated at 37 °C on marine 2216 agar for 3 days were white, smooth, transparent, circular and less than 1.0 mm in diameter. The total genome size of f23T was 2,803,849 bp with a G + C content of 52.79%. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain f23T and O. marina H-Z20T were 69.62% and 20.5%, which both below the species delineation threshold. Chemotaxonomic analysis showed that C16:0, cyclo-C17:0, C18:0, Sum Feature 3 (C16:1ω7c and/or C16:1ω6c) and Sum Feature 8 (C18:1ω6c and C18:1ω7c) as the major fatty acids, ubiquinone-8 as the major isoprenoid quinone, phosphatidylethanolamine as the major cellular polar lipids. Based on the polyphasic analysis, f23T represents a novel species within the genus Orrella, for which the name Orrella daihaiensis sp. nov. is proposed. The type strain is f23T (= CGMCC 1.18761 T = KCTC 82425 T).
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Alcaligenaceae; Daihai Lake; Orrella daihaiensis sp. nov.; Polyphasic taxonomic

Mesh:

Substances:

Year:  2022        PMID: 35751751     DOI: 10.1007/s00203-022-03056-9

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  21 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  Distribution of menaquinones in actinomycetes and corynebacteria.

Authors:  M D Collins; T Pirouz; M Goodfellow; D E Minnikin
Journal:  J Gen Microbiol       Date:  1977-06

3.  Assembly of long, error-prone reads using repeat graphs.

Authors:  Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin; Pavel A Pevzner
Journal:  Nat Biotechnol       Date:  2019-04-01       Impact factor: 54.908

4.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

5.  Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis.

Authors:  Aurelien Carlier; Margo Cnockaert; Linda Fehr; Peter Vandamme; Leo Eberl
Journal:  Syst Appl Microbiol       Date:  2016-11-24       Impact factor: 4.022

6.  Microbial Enzymes and Their Applications in Industries and Medicine 2016.

Authors:  Periasamy Anbu; Subash C B Gopinath; Bidur Prasad Chaulagain; Thangavel Lakshmipriya
Journal:  Biomed Res Int       Date:  2017-03-28       Impact factor: 3.411

7.  TIGRFAMs and Genome Properties in 2013.

Authors:  Daniel H Haft; Jeremy D Selengut; Roland A Richter; Derek Harkins; Malay K Basu; Erin Beck
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

8.  CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats.

Authors:  Charles Bland; Teresa L Ramsey; Fareedah Sabree; Micheal Lowe; Kyndall Brown; Nikos C Kyrpides; Philip Hugenholtz
Journal:  BMC Bioinformatics       Date:  2007-06-18       Impact factor: 3.169

9.  Data, information, knowledge and principle: back to metabolism in KEGG.

Authors:  Minoru Kanehisa; Susumu Goto; Yoko Sato; Masayuki Kawashima; Miho Furumichi; Mao Tanabe
Journal:  Nucleic Acids Res       Date:  2013-11-07       Impact factor: 16.971

10.  The Pfam protein families database: towards a more sustainable future.

Authors:  Robert D Finn; Penelope Coggill; Ruth Y Eberhardt; Sean R Eddy; Jaina Mistry; Alex L Mitchell; Simon C Potter; Marco Punta; Matloob Qureshi; Amaia Sangrador-Vegas; Gustavo A Salazar; John Tate; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.