Literature DB >> 35733342

Probing local chromatin dynamics by tracking telomeres.

Rebecca Benelli1, Matthias Weiss2.   

Abstract

Chromatin dynamics is key for cell viability and replication. In interphase, chromatin is decondensed, allowing the transcription machinery to access a plethora of DNA loci. Yet, decondensed chromatin occupies almost the entire nucleus, suggesting that DNA molecules can hardly move. Recent reports have even indicated that interphase chromatin behaves like a solid body on mesoscopic scales. To explore the local chromatin dynamics, we have performed single-particle tracking on telomeres under varying conditions. We find that mobile telomeres feature, under all conditions, a strongly subdiffusive, antipersistent motion that is consistent with the monomer motion of a Rouse polymer in viscoelastic media. In addition, telomere trajectories show intermittent accumulations in local niches at physiological conditions, suggesting that the surrounding chromatin reorganizes on these timescales. Reducing the temperature or exposing cells to osmotic stress resulted in a significant reduction of mobile telomeres and the number of visited niches. Altogether, our data indicate a vivid local chromatin dynamics, akin to a semidilute polymer solution, unless perturbations enforce a more rigid or entangled state of chromatin.
Copyright © 2022 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 35733342      PMCID: PMC9382323          DOI: 10.1016/j.bpj.2022.06.020

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  24 in total

1.  Apparent subdiffusion inherent to single particle tracking.

Authors:  Douglas S Martin; Martin B Forstner; Josef A Käs
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

2.  Experimental evidence for the influence of molecular crowding on nuclear architecture.

Authors:  Karsten Richter; Michelle Nessling; Peter Lichter
Journal:  J Cell Sci       Date:  2007-04-12       Impact factor: 5.285

3.  Micron-scale coherence in interphase chromatin dynamics.

Authors:  Alexandra Zidovska; David A Weitz; Timothy J Mitchison
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

4.  Transient anomalous diffusion of telomeres in the nucleus of mammalian cells.

Authors:  I Bronstein; Y Israel; E Kepten; S Mai; Y Shav-Tal; E Barkai; Y Garini
Journal:  Phys Rev Lett       Date:  2009-07-02       Impact factor: 9.161

5.  Chromosomal locus tracking with proper accounting of static and dynamic errors.

Authors:  Mikael P Backlund; Ryan Joyner; W E Moerner
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-06-29

Review 6.  From a melt of rings to chromosome territories: the role of topological constraints in genome folding.

Authors:  Jonathan D Halverson; Jan Smrek; Kurt Kremer; Alexander Y Grosberg
Journal:  Rep Prog Phys       Date:  2014-01-28

7.  Anomalous diffusion models and their properties: non-stationarity, non-ergodicity, and ageing at the centenary of single particle tracking.

Authors:  Ralf Metzler; Jae-Hyung Jeon; Andrey G Cherstvy; Eli Barkai
Journal:  Phys Chem Chem Phys       Date:  2014-11-28       Impact factor: 3.676

Review 8.  The effects of osmotic stress on the structure and function of the cell nucleus.

Authors:  John D Finan; Farshid Guilak
Journal:  J Cell Biochem       Date:  2010-02-15       Impact factor: 4.429

9.  Visualizing telomere dynamics in living mammalian cells using PNA probes.

Authors:  Chris Molenaar; Karien Wiesmeijer; Nico P Verwoerd; Shadi Khazen; Roland Eils; Hans J Tanke; Roeland W Dirks
Journal:  EMBO J       Date:  2003-12-15       Impact factor: 11.598

10.  Chromatin Viscoelasticity Measured by Local Dynamic Analysis.

Authors:  Anat Vivante; Irena Bronshtein; Yuval Garini
Journal:  Biophys J       Date:  2020-04-14       Impact factor: 4.033

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