Chiral bicyclic N,O-acetal isoserine derivatives have been synthesized by an acid-catalyzed tandem N,O-acetalization/intramolecular transcarbamoylation reaction between conveniently protected l-isoserine and 2,2,3,3-tetramethoxybutane. The delicate balance of the steric interactions between the different functional groups on each possible diastereoisomer controls their thermodynamic stability and hence the experimental product distribution. These chiral isoserine derivatives undergo diastereoselective alkylation at the α position, proceeding with either retention or inversion of the configuration depending on the relative configuration of the stereocenters. Quantum mechanical calculations revealed that a concave-face alkylation is favored due to smaller torsional and steric interactions at the bicyclic scaffold. This synthetic methodology gives access to chiral β2,2-amino acids, attractive compounds bearing a quaternary stereocenter at the α position with applications in peptidomimetic and medicinal chemistry. Thus, enantiopure α-alkylisoserine derivatives were produced upon acidic hydrolysis of these alkylated scaffolds. In addition, α-benzylisoserine was readily transformed into a five-membered ring cyclic sulfamidate, which was ring opened regioselectively with representative nucleophiles to yield other types of enantiopure β2,2-amino acids such as α-benzyl-α-heterofunctionalized-β-alanines and α-benzylnorlanthionine derivatives.
Chiral bicyclic N,O-acetal isoserine derivatives have been synthesized by an acid-catalyzed tandem N,O-acetalization/intramolecular transcarbamoylation reaction between conveniently protected l-isoserine and 2,2,3,3-tetramethoxybutane. The delicate balance of the steric interactions between the different functional groups on each possible diastereoisomer controls their thermodynamic stability and hence the experimental product distribution. These chiral isoserine derivatives undergo diastereoselective alkylation at the α position, proceeding with either retention or inversion of the configuration depending on the relative configuration of the stereocenters. Quantum mechanical calculations revealed that a concave-face alkylation is favored due to smaller torsional and steric interactions at the bicyclic scaffold. This synthetic methodology gives access to chiral β2,2-amino acids, attractive compounds bearing a quaternary stereocenter at the α position with applications in peptidomimetic and medicinal chemistry. Thus, enantiopure α-alkylisoserine derivatives were produced upon acidic hydrolysis of these alkylated scaffolds. In addition, α-benzylisoserine was readily transformed into a five-membered ring cyclic sulfamidate, which was ring opened regioselectively with representative nucleophiles to yield other types of enantiopure β2,2-amino acids such as α-benzyl-α-heterofunctionalized-β-alanines and α-benzylnorlanthionine derivatives.
The synthesis of enantiomerically
and diastereomerically pure compounds
is still one of the main challenges faced by organic chemists. In
this context, the use of chiral auxiliaries that are covalently bound
to the substrate and subsequently removed is an effective strategy
in asymmetric synthesis.[1,2] Both chiral oxazolidinones
(Evans’ oxazolidinones) and oxazolidines (N,O-acetals) have been extensively used as efficient
chiral auxiliaries in asymmetric synthesis.[3−5] By combining
both strategies, we designed a chiral oxazolidine–-oxazolidinone-fused
bicyclic scaffold, readily accessible from N-Boc-protected
serine and threonine esters by diastereoselective reaction with 2,2,3,3-tetramethoxybutane
(TMB) and catalytic amounts of p-toluenesulfonic
acid (TsOH·H2O).[6] These
chiral derivatives displayed exceptional diastereoselectivities in
the alkylation at their α position with different electrophiles.
The alkylation occurs with total retention of the configuration due
to the high pyramidalization of the enolate intermediate and allows
the synthesis of a wide variety of chiral quaternary α-alkylserine
and threonine derivatives (Scheme ).[7,8] Conversely, when these scaffolds
were synthesized from unusual (allo-threonine) or
unnatural (α-methylserine) amino acids, the reaction under the
same conditions resulted in a complete loss of stereoselectivity toward N,O-acetals formation.[9] As inferred from the computational studies, slight variations
on the three-dimensional arrangement of the exocyclic substituents
of the bicyclic compounds notably affect the thermodynamical stability
of the corresponding isomers and hence determine the stereochemical
outcome. With this in mind, we envisioned the use of non-natural amino
acid isoserine to form the corresponding bicyclic N,O-acetals and therefore provide access to chiral
quaternary β2,2-amino acids (Scheme ). During the past decades, β-amino
acids have become research targets in the chemical biology field,[10−13] and thus, there has been continuous interest in the synthetic chemistry.[14−17] However, despite the many reported methods to obtain enantioenriched
β2- and β3-amino acids, only a few
synthetic routes for the asymmetric synthesis of β2,2-amino acids have been reported,[18,19] and the synthesis
remains a challenge in organic synthesis.[20,21] The importance of this type of amino acid is due to the existence
of a quaternary stereocenter at the α position, which plays
a significant role in the conformational behavior with implications
in their use as peptidomimetic units and as key targets in the synthesis
of Taxol analogues and β-lactams with antibiotic activity.[20,21] In this regard, the nucleophilic ring opening of α-methylisoserine
sulfamidates has been extensively used by our group to access a wide
variety of β2,2-amino acid derivatives.[22,23]
Scheme 1
Synthesis of (S)-α-Alkylserine from Protected l-Ser (previous work) and (R)- and (S)-α-Alkylisoserines from Protected l-isoSer
(this work) via Diastereoselective Formation of Bicyclic Acetals and
Alkylation Followed by Hydrolysis
Results
and Discussion
Formation of Bicyclic N,O-Acetal
Isoserine Derivatives
N-Boc-l-isoserine
methyl ester (Boc-l-isoSer-OMe, 1) was readily
synthesized from commercially available l-isoserine.[24] The reaction of Boc-l-isoSer-OMe with
2,2,3,3-tetramethoxybutane (TMB), freshly prepared from butan-2,3-dione,[25] was then assayed in the presence of catalytic
amounts of diverse acids under different reaction conditions (Scheme and Supporting Information). In all cases, four different
products were obtained in different ratios, corresponding to bicyclic N,O-acetal diastereomers 2 and 3, and a mixture of two nonseparable methylene-oxazolidinone
isomers 4. This byproduct is likely formed by an in situ
acid-catalyzed elimination reaction from compounds 2 and 3, as previously observed in the formation of allo-threonine-derived bicyclic N,O-acetal.[9] The optimized conditions for N,O-acetal formation required treatment
with 0.2 equiv of p-toluenesulfonic acid (TsOH·H2O) or camphorsulfonic acid (CSA·H2O), affording
isolated bicyclic compounds 2 and 3 in moderate
yields (55% and 32%, respectively) and diastereomeric ratios (∼2:1).
The conditions using CSA were applied to scale up the reaction starting
from 13.7 mmol of 1 to obtain bicyclic systems 2/3 in 85% yield with a 63:37 ratio, respectively
(entry 15, Table S1, Supporting Information). Because these two bicyclic compounds 2 and 3 are the key derivatives to start the synthetic routes that
allow the synthesis of important β2,2-amino acids,
we need to have them not only in large quantities but also in sufficient
diastereomeric purity. Therefore, we achieved a suitable chromatographic
separation that led to a high diastereomeric purity (dr 98:2) for
each of them, measured by 1H NMR (Supporting
Information).
Scheme 2
Formation of Bicyclic N,O-Acetal
Isoserine Derivatives 2 and 3
Bicyclic compounds 2 and 3 were assessed
by complete NMR analysis, including 2D NOESY experiments, which allowed
us to determine the absolute configuration of the new stereocenters
created upon the bicyclic acetal formation. Considering that the configuration
of the α-carbon of the starting isoserine derivative remains
unaffected, the medium-size NOE cross-peaks observed for the bridgehead
methyl group linked to the C7a carbon (Me7a) with H2 and
H3a protons as well as with the methoxy group linked to C7 carbon
(OMe) confirmed that bicyclic compound 2 exhibited a
(2S,7R,7aS)-configuration.
This finding was corroborated by X-ray analysis of a monocrystal of
compound 2 obtained by slow crystallization in CH2Cl2/hexane (Supporting Information). On the other hand, the NOE cross-peaks observed for Me7a with the methyl ester and the methoxy (OMe) groups confirmed the
(2S,7S,7aR)-configuration
of bicyclic compound 3 (Figure ). Of note, the major compound 2 displays an absolute configuration equivalent to that of the major
products obtained from natural amino acids (Ser and Thr), whereas
the minor compound 3 exhibits reverse configurations
at both C7 and C7a.
Figure 1
(A) ORTEP3 diagram of compound 2 obtained
by X-ray
diffraction analysis showing thermal ellipsoids at the 75% probability
level, and 2D NOESY NMR (400 MHz) experiments for compounds 2 (B) and 3 (C) in CDCl3 at 298 K.
(A) ORTEP3 diagram of compound 2 obtained
by X-ray
diffraction analysis showing thermal ellipsoids at the 75% probability
level, and 2D NOESY NMR (400 MHz) experiments for compounds 2 (B) and 3 (C) in CDCl3 at 298 K.
Mechanism of the Formation of Compounds 2–4
The proposed mechanism for
this reaction is similar
to that described for the thermodynamically controlled formation of
related bicyclic N,O-acetals[6,9] from
Boc-l-Ser-OMe: acid-catalyzed formation of the five-membered N,O-acetal followed by formation of the
fused O,O-acetalic carbamate driven
by tert-butyl group cleavage. To provide a rationale
for the experimental outcome, we evaluated the thermal stability of
all of the possible stereoisomers of the final bicyclic compounds
using quantum mechanics calculations. Bicyclic diastereoisomers I–IV were optimized in implicit toluene solvent (see
computation details and Supporting Information); the calculated minimum-energy structures along with their relative
free Gibbs energies (ΔG) and populations (p) are depicted in Figure . Consistent with our previous observations and with
the 2D NOESY NMR experiments, all of the calculated isoserine-derived
bicyclic diastereoisomers I–IV show a highly pyramidalized
bridgehead N atom resulting from the conformational restrains imposed
by the bicyclic structure. Structures III and I, corresponding to compounds 2 and 3, respectively,
are ca. 3–4 kcal mol–1 more stable than structures II and IV due to the smaller steric interactions
between the OMe group and the N,O-acetalic oxygen (O1) as well as between Me7 and Me7a. On the other hand, structure III (compound 2) is just 0.8 kcal mol–1 more stable than
structure I (compound 3), reflecting their
very similar thermostability as observed experimentally. In fact,
a theoretical ∼3:1 ratio of compounds 2 and 3 was predicted from the Boltzmann distribution of all conformers
and stereoisomers calculated at the experimental reaction temperature
(115 °C) from their free energies, which matches the experimentally
observed ratio. In accordance with their comparable energies, both
disatereomers, I and III, display very similar
three-dimensional arrangements, the main difference being the outward
and inward presentation of the ester group with respect to the bicyclic
scaffold, respectively.
Figure 2
Lowest energy structures for the four possible
bicyclic diastereomers
(I–IV) obtained upon reaction of Boc-l-isoSer-OMe 1 with TMB calculated with
PCM(toluene)/M06-2X/6-31+G(d,p). Relative free Gibbs energies at 388
K (ΔG) are given in kcal mol–1, and relative populations (p) at the same temperature
derived from ΔG are shown in parentheses. Dark
and light red arrows indicate high or low steric hindrance, respectively.
Lowest energy structures for the four possible
bicyclic diastereomers
(I–IV) obtained upon reaction of Boc-l-isoSer-OMe 1 with TMB calculated with
PCM(toluene)/M06-2X/6-31+G(d,p). Relative free Gibbs energies at 388
K (ΔG) are given in kcal mol–1, and relative populations (p) at the same temperature
derived from ΔG are shown in parentheses. Dark
and light red arrows indicate high or low steric hindrance, respectively.The acid-catalyzed elimination process leading
to enecarbamates 4 was also investigated computationally
(see Supporting Information). Protonation
at O1 in I (compound 3) and III (compound 2) was found to promote the spontaneous cleavage
of the O1–C7a
bond and formation of an 2-oxo-2,5-dihydrooxazol-3-ium cation; subsequent
deprotonation of the methyl group adjacent to that carbocation yields
the experimentally observed methylene-oxazolidinones 4.
Diastereoselective Alkylation of Derivatives 2 and 3
Considering the good results obtained with bicyclic N,O-acetal acids derived from serine and
threonine,[6] we assayed the alkylation of
both chiral isoserine-derived compounds 2 and 3 as an entry to quaternary α-alkyl-β2-amino
acids. Optimized conditions required treatment of 2 with
methyl iodide (MeI, a) at low temperature in the presence
of lithium hexamethyldisilazide (LHMDS) as a base and hexamethylphosphoramide
(HMPA) as an additive to obtain α-methylated derivative 5a in good yield (95%) as a 83:17 mixture of diastereoisomers
(Scheme and Supporting Information).
Scheme 3
Diastereoselective
Alkylation of Chiral Bicyclic Acetals 2 and 3
The absolute configuration
of α-methylated compound 5a was determined by a
2D NOESY NMR experiment (Figure ). The medium-size NOE cross-peaks
observed for the Me7a group with a H3a proton and OMe along
with the cross-peak Me2-H3b confirmed that bicyclic 5a displays a (2R,7R,7aS)-configuration. Thus, methylation of compound 2 occurs with inversion of the configuration at the C2 carbon, contrary
to the alkylation of bicyclic N,O-acetals derived from Ser/Thr.[6] On the
other hand, the diastereoselective alkylation of chiral building block 3 with MeI (a) under the same conditions led
to α-methylated bicyclic compound 6a in 5 min in
a good yield (94%) and with a similar diastereoselectivity (82:18, Scheme ). Surprisingly,
methylated bicyclic compound 6a displays the same spectroscopy
data (including 2D NOESY) as bicyclic compound 5a, but
it showed the opposite sign in its specific rotation value. Therefore,
a (2S,7S,7aR)-configuration
is inferred from these data (Figure ), indicating that, in this case, methylation occurs
with retention of configuration at the C2 carbon. Hence, the major
alkylation products from 2 and 3 (compounds 5a and 6a) are enantiomers to each other.
Figure 3
Two-dimensional
NOESY NMR experiment for compounds 5a or 6a performed with 400 MHz equipment using CDCl3 as solvent
at 298 K.
Two-dimensional
NOESY NMR experiment for compounds 5a or 6a performed with 400 MHz equipment using CDCl3 as solvent
at 298 K.The scope of the diastereoselective
alkylation of compound 2 was expanded using ethyl triflate
(b), benzyl
iodide (c), and allyl iodide (d) to obtain
alkylated bicyclic compounds 5b (92%, dr 85:15), 5c (91%, dr 80:20), and 5d (93%, dr 87:13) with
good yields and diastereoselectivities. Similarly, the diastereoselective
alkylation of compound 3 was also carried out with benzyl
iodide (c), giving alkylated bicyclic compound 6c in an 89% yield and a diastereomeric ratio of 80:20. As
in the alkylation of compounds 2 and 3 with
MeI to give the methylated bicyclic compounds 5a and 6a, respectively, the benzylated compounds 5c and 6c are also enantiomers. Importantly, the final
alkylated compounds 5a–d and 6a,c were purified using the corresponding chromatographic
columns to achieve high diastereomeric purity for all of them (Scheme ).
Stereochemical
Outcome of the Alkylation Reaction
The
stereochemical course of the alkylation reactions involves an inversion
of the configuration at the reacting carbon for bicyclic compound 2 and a retention of configuration at the same position for
bicyclic compound 3. This perplexing behavior observed
for apparently very similar substrates was analyzed quantum mechanically
(Figure A and Figure
S3 in the Supporting Information) using
bromomethane as a computationally tractable alkylating reagent in
implicit THF solvent (see computation details and Supporting Information). Due to the experimental usage of
HMPA, which has a superior ability to effectively solvate lithium
cations,[26] bare enolates were considered.
Similarly to serine-derived N,O-acetal
enolate,[6] enolate (2proS,7R,7aS)-2′ displays a noticeable
nonplanar (pyramidalized) character (α = 32°) according
to the out-of-plane angle between the C2–CO2Me bond
and the O1–C2–C3 plane (Figure B). This feature usually leads to retention
of configuration of the stereocenter upon alkylation, so it is reasonable
to think that the highly pyramidalized enolate must invert prior to
alkylation to fulfill the experimental observation. In fact, the inverted
enolate 2′_epi, which also exhibits a highly pyramidalized
character (α = 28°), showed a slightly higher stability
(ΔΔG = −0.8 kcal mol–1) than 2′ due to the release of torsional strain
on the bicyclic scaffold upon deprotonation. Inspection of the Newman
projection along the N4–C7a bonds revealed that both rings
in enolate 2′ are more eclipsed than those in 2′_epi, as reflected by the smaller dihedral angles
(Figure B). The activation
barrier calculated for the pyramidal inversion of enolate 2′ (2′_TS) was exceedingly
small (1.2 kcal mol–1), indicating a very fast interconversion
between both enolates. The geometries of the minimum-energy transition
structures (TS) for the C-alkylation of both enolates
by the convex (2′_TS) and concave (2′_epi_TS) faces revealed a significant pyramidalization for both cases
(α = 35° and 29°, respectively). Considering the rapid
interconversion between reactant enolates 2′ and 2′_epi and the irreversible formation of products,
the Curtin–Hammett principle can be applied. In this context,
the difference in transition state energies (ΔΔG‡ = 0.9 kcal mol–1)
indicates a preference for the sterically more-hindered concave (Si) face (2′_epi_TS). This difference leads to a theoretical kinetic 93:7 ratio
for products 5a and 5a_epi, predicted from
the Boltzmann distribution of all calculated alkylation TSs at the
experimental reaction temperature (−78 °C), which is in
good agreement with the experimental results. This preference for
the apparently more hindered concave (Si) face can
also be rationalized by the lower torsional strain around the bridgehead
atoms upon enolate formation and alkylation, which is a common trend
in fused five-membered bicyclic compound scaffolds.[6,27−29]
Figure 4
Minimum-energy pathways for the alkylation reaction of
enolates 2′ (A) with bromomethane calculated with
PCM(THF)/M06-2X/6-31+G(d,p).
Free Gibbs energies (ΔG) calculated at 195
K are given in kcal mol–1. (B) Newman projections
from N4 to C7a of the lowest energy structures for enolates 2′ and 2′_epi and transition states 2′_TS and 2′_epi_TS. Torsional strain is represented through
the dihedral angles highlighted in cyan and magenta. Dihedral angles
closer to 60° correspond to more staggered conformations. Pyramidalization
is represented through the out-of-plane angle (in light brown) between
the C2–CO2Me bond and the O1–C2–C3
plane. Angles close to 0° correspond to planarity.
Minimum-energy pathways for the alkylation reaction of
enolates 2′ (A) with bromomethane calculated with
PCM(THF)/M06-2X/6-31+G(d,p).
Free Gibbs energies (ΔG) calculated at 195
K are given in kcal mol–1. (B) Newman projections
from N4 to C7a of the lowest energy structures for enolates 2′ and 2′_epi and transition states 2′_TS and 2′_epi_TS. Torsional strain is represented through
the dihedral angles highlighted in cyan and magenta. Dihedral angles
closer to 60° correspond to more staggered conformations. Pyramidalization
is represented through the out-of-plane angle (in light brown) between
the C2–CO2Me bond and the O1–C2–C3
plane. Angles close to 0° correspond to planarity.On the other hand, deprotonation of compound 3 leads
to enolate (2proS,7S,7aR)-3′, which turns out to be enantiomer of enolate (2proR,7R,7aS)-2′_epi (Figure S3 in the Supporting
Information). Therefore, both minimum-energy pathways starting
from either 3′ or 2′ are geometrically
and energetically equivalent (see Figure A and Figure S3 in the Supporting Information), and an analogous conclusion can be
drawn. Since enolate 3′ is the most stable intermediate
in this case, the alkylation reaction proceeds with retention of the
configuration toward compound 6a (enantiomer of 5a), and the epimeric compound 6a_epi is formed
as a minor product under Curtin–Hammett conditions.
Synthesis
of α-Substituted Isoserines
Representative
α-alkylated bicyclic acetals 5a, 5b, 5c, 6a, and 6c were subjected
to acidic hydrolysis with 6 M HCl to obtain β-amino acid (R)-α-methylisoserine 7a, (R)-α-ethylisoserine 7b, (R)-α-benzylisoserine 7c, (S)-α-methylisoserine 8a, and (S)-α-benzylisoserine 8c, respectively, in good yields as hydrochloride salts (Scheme ). In some cases (7a–c and 8a,c), the corresponding
amino acid hydrochlorides were treated with propylene oxide to obtain
free β-amino acids to compare their physical data with previously
published data. Thus, the experimental data obtained for free (R)- and (S)-α-methylisoserine 7a and 8a as well as for β-amino acids 7b and 7c agree with those previously reported
in the literature,[30] confirming the stereochemical
outcome of the diastereoselective alkylation reactions. We tried to
determine the enantiomeric purity of these Cα-tetrasubstituted
β-amino acids using chiral HPLC without success. Fortunately,
in the case of amino acids 7c and 8c (enantiomers),
the enantiomeric purity could be measured by NMR using a chiral lanthanide
shift reagent. In particular, a samarium(III) complex with (S,S)-ethylenediamine-N,N′-disuccinate allowed the separation of
the signal (doublet) corresponding to a benzylic proton, demonstrating
that the enantiomeric purity was >95:5 (Figure S20 in the Supporting Information). Considering the ability
of non-natural β2,2-amino acids,[30] particularly α-methylisoserine, to induce folded
conformations when incorporated into peptides and the few reported
methods to synthesize them,[22] the methodology
reported herein represents a valuable alternative.
Scheme 4
Hydrolysis of Chiral
Bicyclic Acetals 5a–c and 6a,c To Obtain Enantiomerically Pure (R)- and (S)-α-Alkylisoserines
α-Substituted Isoserines as Precursors of β2,2-Amino Acids via Sulfamidate Chemistry
Five-membered
cyclic sulfamidates are well-known valuable synthetic intermediates
in organic chemistry for the regio- and stereoselective synthesis
of a wide variety of chemicals.[31] Although
the synthesis and reactivity of sulfamidates have been described in
detail,[32,33] such derivatives are mostly monosubstituted
or 1,2-disubstituted. In contrast, little is known about hindered
sulfamidates. Our group has widely studied sulfamidates derived not
only from serine,[34] isoserine, and α-methylserine[24] but also from α-methylisoserine.[22] Those building blocks were subjected to further
nucleophilic ring-opening reactions to obtain unnatural amino acid
derivatives, glycosyl amino acids, peptides, and glycopeptides.[23,34,35] On this basis, we envisioned
to further explore the scope of a new class of hindered sulfamidates
in ring-opening reactions with a variety of nucleophiles. As a representative
example, the amino and acid groups of α-benzylisoserine (α-Bn-isoSer, 7c) were conveniently protected as a tert-butyl carbamate and a methyl ester, respectively, to obtain compound 9. Sulfamidate 10 was then generated using a
modified protocol[22] involving the use of
thionyl chloride (SOCl2) and pyridine (py) in acetonitrile
(MeCN) as a solvent followed by oxidation of the cyclic sulfamidite
intermediate with ruthenium tetraoxide (RuO4), generated
in situ from ruthenium trichloride monohydrate (RuCl3·H2O) and sodium periodate (NaIO4) (Scheme ). The structure of sulfamidate 10 was determined by X-ray analysis (Figure and Supporting Information).
Scheme 5
Conversion of (R)-α-Benzylisoserine 7c into Cyclic Sulfamidate 10
Figure 5
ORTEP3 diagram of sulfamidate 10 obtained by X-ray
diffraction analysis showing thermal ellipsoids at the 75% probability
level.
ORTEP3 diagram of sulfamidate 10 obtained by X-ray
diffraction analysis showing thermal ellipsoids at the 75% probability
level.Chiral sulfamidate 10 was ring opened with different
nucleophiles as an entry to various α-benzyl-β2-amino acids (Scheme ). Reaction with sodium azide (NaN3) in DMF at room temperature
followed by treatment with an aqueous 20% H2SO4 solution gave protected α-azido-α-benzyl-β-amino
acid derivative 11, which was then hydrogenated to obtain N-Boc-protected methyl α-benzyl-2,3-diaminopropanoate 12. Finally, acidic hydrolysis of compound 12 with 6 M HCl yielded α-benzyl-α,β-diaminopropanoic
acid 16 (α-Bn-DAP) as a hydrochloride salt. Using
a similar protocol, when sulfamidate 10 was treated with
phenylthiolate (PhS–), phenylselenolate (PhSe–), and fluoride (F–) followed by
addition of 20% H2SO4, the corresponding ring-opening
products 13, 14, and 15 were
readily obtained in good yields. The competitive elimination reaction
frequently observed in α-methylisoserine-derived sulfamidates[22,35] occurred only when fluoride was used as a nucleophile, and a phenyl
acrylate derivative was obtained as a byproduct (21%). Ring-opening
products 13, 14, and 15 were
hydrolyzed with 6 M HCl to give β2,2-amino acids 17 (α-Bn-SPh-isoCys), 18 (α-Bn-SePh-isoSec), and 19 (α-Bn-α-F-β-Ala),
respectively, as hydrochloride salts (Scheme ). The absolute configuration of the ring-opening
products and β2,2-amino acids was determined by comparing
their optical properties with those reported in the literature,[36−40] demonstrating that the ring-opening reactions occur with inversion
of the configuration at the chiral tetrasubstituted carbon center.
Scheme 6
Nucleophilic Ring-Opening Reactions of Sulfamidate 10 Followed by Acid Hydrolysis To Obtain β2,2-Amino
Acids 16–19
Finally, sulfamidate 10 was reacted with Boc-Cys-OMe
and a Cys-containing model tetrapeptide (Ac-Cys-Gly-Val-Ala-NH2) to obtain protected α-benzylnorlanthionine derivative 20 and a modified tetrapeptide 21 in 88% and
49% yields, respectively (Scheme ). The good yield obtained for α-benzylnorlanthionine
derivative 20 from cyclic sulfamidate 10 derived from α-Bn-isoSer using DBU as a base is similar to
other ring-opening reactions of cyclic sulfamidates such as α-Me-isoSer
derivatives. On the other hand, the yield of the synthesis of tetrapeptide 21 decreases, probably due to the large size of the nucleophile
used to carry out the ring-opening reaction of cyclic sulfamidate 10. The α-benzylnorlanthionine scaffold is a mimetic
of naturally occurring cross-linker bis-amino acid lanthionine, commonly
found in peptidoglycans of certain Fusobacterium species[41] and antimicrobial lanthipeptides.[42,43]
Scheme 7
Nucleophilic Ring-Opening Reactions of Sulfamidate 10 To Obtain α-Bn-norLan 20 and α-Bn-norLan-Containing
Peptide 21
Conclusion
This report covers the synthesis of a diversity
of enantiomerically
pure β2,2-amino acids, considered challenging in
organic synthesis, using a straightforward synthetic methodology from l-isoserine. The strategy involves the formation and subsequent
diastereoselective alkylation of chiral bicyclic N,O-acetals to obtain α-alkylisoserine derivatives. Remarkably,
these derivatives are alkylated with either retention or inversion
of configuration depending on the relative configuration of the stereocenters.
The alkylation mechanism involves a highly pyramidalized chiral enolate,
which can undergo a fast pyramidal inversion. Alkylation occurs preferably
by the ostensibly most-hindered concave face due to the reduced torsional
strain at the bicyclic scaffold in the alkylation transition structure.
As a synthetic application, a variety of enantiomerically pure quaternary
α-alkylisoserines were synthesized. Further, α-benzylisoserine
served as a template to generate a chiral sulfamidate scaffold that
was adequately prepared to undergo stereospecific nucleophilic ring-opening
reactions with inversion of the configuration at the stereogenic tetrasubstituted
carbon center. This sulfamidate provided easy access to four representative
β2,2-amino acids derived from α-benzyl-β-alanine
incorporating amino, phenylthio, phenylselenyl, or fluoro groups at
the α position as well as the bis-amino acid α-benzylnorlanthionine
and a α-benzylnorlanthionine-containing peptide.
Experimental Section
General and Experimental Methods
Commercial reagents
were used without further purification. Analytical thin layer chromatography
(TLC) was performed on Macherey-Nagel precoated aluminum sheets with
a 0.20 mm thickness of silica gel 60 with fluorescent indicator UV254.
TLC plates were visualized with UV light and by staining with a potassium
permanganate solution (0.75 g f KMnO4, 5 g of K2CO3, and 0.63 mL of 10% NaOH in 100 mL of water) or a
ninhydrin solution (1.5 g of ninhydrin in 100 mL of n-butanol and 3.0 mL of acetic acid). Column chromatography was performed
on silica gel (230–400 mesh). 1H and 13C{1H} NMR spectra were measured with a 300 or 400 MHz
spectrometer with TMS as the internal standard. Multiplicities are
quoted as singlet (s), broad singlet (br s), doublet (d), doublet
of doublets (dd), triplet (t), or multiplet (m). Spectra were assigned
using COSY and HSQC experiments. The results of these experiments
were processed with MestreNova software. High-resolution electrospray
mass (ESI) spectra were recorded on a microTOF spectrometer; accurate
mass measurements were achieved using sodium formate as an external
reference.
Two-Dimensional NMR Experiments
Spectra were assigned
using COSY and edited-HSQC experiments (blue color for CH2 and red color for CH and CH3 groups). NOESY experiments
were recorded on a 400 MHz spectrometer at 298 K. The experiments
were conducted using phase-sensitive ge-2D NOESY spectra. The number
of scans used was 16, and the mixing time was 800 ms.
Disatereoselective
Formation of Bicyclic N,O-Acetals 2 and 3
In
a round-bottom flask, (S)-N-Boc-isoserine
methyl ester (200 mg, 0.91 mmol) was dissolved in toluene (4 mL).
Then, TMB (330 mg, 1.82 mmol) and CSA·H2O (46 mg,
0.18 mmol) were added. The solution was stirred under reflux in an
oil bath for 1 h, until the starting materials disappeared. The reaction
mixture was cooled to room temperature, diluted with diethyl ether
(10 mL), and quenched with an aqueous saturated NaHCO3 solution
(10 mL). The aqueous phase was extracted with diethyl ether (2 ×
10 mL), and the organic layers were combined and dried over anhydrous
Na2SO4. The solvent was removed, and the crude
product was purified by column chromatography (hexane/EtOAc, 7:3)
to give bicyclic N,O-acetals 2 (123 mg, 55%) and 3 (74 mg, 33%) together with
compounds 4 (29 mg, 13%) as yellow oils. This synthetic
procedure was scaled up to obtain N,O-acetals 2 and 3 in gram quantities after
column chromatography; 1.78 g of 2 (53%, dr 98:2, Rf = 0.33) and 1.07 g of 3 (32%,
dr 99:1, Rf = 0.27) using the following
conditions: (S)-N-Boc-isoserine
methyl ester (3.00 g, 13.7 mmol), toluene (60 mL), TMB (4.97 g, 27.4
mmol), and CSA·H2O (693 mg, 2.74 mmol). The solution
was stirred under reflux for 1 h, until the starting materials disappeared.
General Procedure for Diastereoselective
Alkylation of Bicyclic N,O-Acetals
In a Schlenk flask,
the bicyclic N,O-acetal (2 or 3) (100 mg, 0.4 mmol) was dissolved in dry THF (10
mL) under inert atmosphere conditions. Then, HMPA (285 μL, 1.65
mmol) was added, and the mixture was cooled to −78 °C.
Afterward, the alkylating agent (1.25 mmol) was charged, and LHDMS
(815 μL, 0.8 mmol) was added dropwise. After 5 min, the reaction
was quenched with an aqueous saturated NH4Cl solution (10
mL) and warmed up to room temperature. The mixture was diluted with
Et2O (25 mL), and the aqueous phase was extracted with
Et2O (2 × 25 mL). The combined organic phase was dried
over anhydrous Na2SO4, and the solvent was evaporated.
The crude reaction corresponds to a mixture of both diastereoisomers,
which were subjected to purification by column chromatography to obtain
the major product as a colorless oil.
Yield of the alkylation of compound 2 with
allyl iodide was 93% with a diastereoselectivity of 87:13. After column
chromatography (CHCl3/toluene/EtOAc 8:1.75:0.25), compound 5d was obtained in an 85% yield (25 mg, from 0.1 mmol of 2) with a dr > 99:1. [α]D25 =
−184.3 (c 1.00, CHCl3). HRMS (ESI) m/z [M + Na]+ calcd for C13H19NO6Na: 308.1105. Found: 308.1109. 1H NMR (CDCl3, 400 MHz): δ (ppm) 5.68–5.59
(m, 1H, CH2CH=CH2),
5.17–5.12 (m, 2H, CH2CH=CH2), 4.11 (d, 1H, J = 12.7 Hz, H3), 3.80 (s, 3H, CO2CH3), 3.68 (d, 1H, J = 12.7 Hz, H3), 3.46 (s, 3H, OCH3), 2.55–2.38 (m, 2H, CH2CH=CH2), 1.66 (s, 3H, CH3), 1.39 (s, 3H, CH3). 13C{1H} NMR (CDCl3, 100 MHz):
δ (ppm) 172.4 (CO2Me), 160.5 (C5), 130.7 (CH2CH=CH2), 120.5 (CH2CH=CH2), 107.4 (C7), 102.6 (C7a), 84.4 (C2), 52.8 (CO2CH3), 52.6 (C3), 51.1
(OCH3), 42.7 (CH2CH=CH2), 17.7 (CH3), 16.1 (CH3).
General
Procedure for Hydrolysis of Alkylated Bicyclic N,O-Acetals
The corresponding
alkylated compound (0.4 mmol of 5a–c or 6a,c) was charged in a round-bottom flask with an
aqueous 6 M solution of HCl (5 mL). The mixture was stirred for 14
h under reflux in an oil bath. The solvent was evaporated; the residue
was dissolved in water (10 mL) and extracted with EtOAc (10 mL). The
aqueous phase was evaporated, and the amino acid hydrochloride salt
was obtained and treated with ethanol/propylene oxide (3:1, 4 mL)
to give the free amino acid as a white solid.
To a solution of thionyl chloride (30.0 μL,
0.42 mmol) in dry acetonitrile (5 mL) was added another solution of
compound 9 (100 mg, 0.32 mmol) in dry acetonitrile (2
mL) dropwise at −40 °C. The reaction was stirred for 45
min, and then pyridine (130 μL, 1.62 mmol) was added. The mixture
was stirred until the starting materials disappeared (2 h). At that
time, the reaction was quenched with water, warmed to room temperature,
and extracted with ethyl acetate (3 × 10 mL). The organic phases
were combined and dried over anhydrous Na2SO4. The solvent was removed under vacuum; the product was dissolved
in acetonitrile (5 mL) and cooled to 0 °C. Ruthenium(III) chloride
hydrate (2 mg, 0.005 mmol), sodium periodate (104 mg, 0.49 mmol),
and water (5 mL) were added. The mixture was stirred for 2 h at 0
°C, and the aqueous phase was extracted with Et2O
(3 × 5 mL). The organic phases were combined, washed with a saturated
solution of NaHCO3, and dried over anhydrous Na2SO4. The solvent was evaporated, and the crude product
was purified by column chromatography (hexane/EtOAc, 8:2), giving
the final product 10 as a colorless oil. Yield 71% (85
mg). [α]D25 = −19.8 (c 1.00, CHCl3). HRMS (ESI) m/z [M + Na]+ calcd for C16H21NO7SNa: 394.0931. Found: 394.0930. 1H NMR (CDCl3, 400 MHz): δ (ppm) 7.28–7.22 (m, 3H, PhCH2), 7.12 (dd, 2H, J = 7.3,
2.3 Hz, PhCH2), 4.33 (d, 1H, J = 10.5 Hz, Hβ), 3.91 (d, 1H, J = 10.5 Hz, Hβ), 3.69 (s, 3H, CO2Me),
3.30 (m, 2H, CH2Ph), 1.46 (s, 9H, Boc). 13C{1H} NMR (CDCl3, 100 MHz): δ
(ppm) 168.0 (CO2Me), 148.2 (CO2(CH3)3), 131.7, 130.1, 128.9,
128.2 (Ph), 86.1 (Cα), 85.3 (CO2C(CH3)3), 53.6 (OMe),
51.2 (Cβ), 42.2 (PhCH2), 27.9 (C(CH3)3).
Cyclic
sulfamidate 10 (40 mg, 0.11 mmol) and sodium azide (32
mg, 0.49 mmol) were dissolved in DMF (4 mL) and stirred at 25 °C
for 1 h until the starting material disappeared. After that time,
the solvent was evaporated, and the residue was dissolved in a mixture
of 20% aq. H2SO4 and CH2Cl2 (1:1, 5 mL). This mixture was stirred for 2 h at room temperature,
and the aqueous phase was extracted with CH2Cl2 (3 × 5 mL). The organic phases were combined and dried over
anhydrous Na2SO4. The solvent was evaporated,
and the crude product was purified by column chromatography (hexane/EtOAc,
7:3) to obtain the final product 11 as a colorless oil
(30 mg, 83%). [α]D25 = +9.9 (c 1.00, CHCl3) HRMS (ESI) m/z [M + Na]+ calcd for C16H22N4O4Na: 357.1533. Found: 357.1532. 1H
NMR (CDCl3, 400 MHz): δ (ppm) 7.29–7.17 (m,
3H, PhCH2), 7.12 (dd, 2H, J = 7.2, 1.9, PhCH2), 4.75 (br s, 1H,
NH), 3.71 (s, 3H, CO2Me), 3.55 (dd, 1H, J = 14.0, 6.7 Hz, Hβ), 3.29 (dd, 1H, J = 14.0, 6.4 Hz, Hβ), 3.12 (d, 1H, J = 13.7 Hz, CH2Ph), 2.94 (d, 1H, J = 13.8 Hz, CH2Ph), 1.37 (s,
9H, Boc). 13C{1H} NMR (CDCl3, 100
MHz): δ (ppm) 170.9 (CO2Me), 155.6
(CO2C(CH3)3), 134.0,
130.1, 128.6, 127.6 (Ph), 80.0 (Cα), 70.8 (CO2C(CH3)3), 52.9 (OMe), 46.2 (Cβ), 41.1 (PhCH2), 28.3 (C(CH3)3).
Cyclic sulfamidate 10 (38 mg, 0.116 mmol), DBU (18
μL, 0.122 mmol), and thiophenol (13 μL, 0.128 mmol) were
dissolved in DMF (4 mL) and stirred at 50 °C in an oil bath until
the starting materials disappeared (2 h). Then, the solvent was removed
under vacuum; the residue was dissolved in a mixture of CH2Cl2 and 20% aq. H2SO4 (1:1, 5 mL)
and stirred for 3 h. After that time, the aqueous phase was extracted
with CH2Cl2 (3 × 5 mL). The organic phases
were combined and dried over anhydrous Na2SO4. The solvent was removed, and the crude product was purified by
column chromatography (hexane/EtOAc, 9:1) to obtain the final product 13 as a colorless oil (39 mg, 95%). [α]D25 = −30.1 (c 1.00, CHCl3). HRMS (ESI) m/z [M + H]+ calcd for C22H28NO4S: 402.1733.
Found: 402.1726. 1H NMR (CDCl3, 400 MHz): δ
(ppm) 7.46–7.08 (m, 10H, PhCH2, PhS), 5.07 (br s, 1H, NH), 3.55 (s, 3H, CO2Me),
3.45–3.39 (m, 1H, Hβ), 3.27–3.21 (m,
2H, CH2Ph, Hβ), 2.97
(d, 1H, J = 13.7 Hz, CH2Ph), 1.41 (s, 9H, Boc). 13C{1H} NMR (CDCl3, 100 MHz): δ (ppm) 171.8 (CO2Me), 155.7 (CO2C(CH3)3), 137.0, 135.3, 130.2, 129.9, 129.1, 129.0, 128.4, 127.6,
127.3, 127.2, (Ph), 79.5 (Cα), 60.0 (CO2C(CH3)3),
52.1 (OMe), 42.6 (Cβ), 40.3 (PhCH2), 28.4 (C(CH3)3).
Cyclic sulfamidate 10 (30 mg, 0.08 mmol) and 1 M solution
of tetrabutylammonium fluoride in THF (105 μL, 0.105 mmol) were
dissolved in DMF (2 mL) and stirred at 25 °C until the starting
materials disappeared by TLC monitoring (5 h). Then, the solvent was
removed, and the residue was dissolved in a mixture of CH2Cl2 and 20% aq. H2SO4 (1:1, 5 mL)
and stirred for 3 h. After that time, the aqueous phase was extracted
with CH2Cl2 (3 × 5 mL). The organic phases
were combined and dried over anhydrous Na2SO4. The solvent was removed to give a mixture of two compounds in a
ratio 79/21. The major compound was the desired product 15, which was accompanied with a side product arising from an elimination
reaction [methyl (E)-2-(((tert-butoxycarbonyl)amino)methyl)-3-phenyl
acrylate] (15b). The mixture was purified by column chromatography
(hexane/EtOAc, 8:2) to obtain compounds 15 (19 mg, 76%)
and 15b (4 mg, 17%), both as colorless oils. Data for
compound 15: [α]D25 = +15.5
(c 1.00, CHCl3). HRMS (ESI) m/z [M + Na]+ calcd for C16H22FNNaO4: 334.1425. Found: 334.1428. 1H NMR (CDCl3, 400 MHz): δ (ppm) 7.33–7.17
(m, 5H, PhCH2), 4.88 (br s, 1H, NH), 3.85
(ddd, 1H, J = 12.9, 11.8, 7.5 Hz, Hβ), 3.73 (s, 3H, CO2Me), 3.52 (‘t’d, 1H, J = 14.8, 5.3 Hz, Hβ), 3.39–3.13
(m, 2H, CH2Ph), 1.47 (s, 9H, Boc). 13C{1H} NMR (CDCl3, 100 MHz): δ
(ppm) 169.6 (CO2Me), 155.6 (CO2C(CH3)3), 133.7, 130.1, 128.5,
128.1, 127.4 (Ph), 97.0 (d, J = 190.3 Hz, Cα), 80.0 (CO2C(CH3)3), 52.6 (OMe), 45.9 (d, J =
23.2 Hz, Cβ), 40.6 (d, J = 20.9
Hz, PhCH2), 28.3 (C(CH3)3). 19F{1H} NMR (CDCl3, 282 MHz): −167.8. Data for compound 15b: HRMS (ESI) m/z [M + Na]+ calcd for C16H21NNaO4: 314.1363.
Found: 314.1369. 1H NMR (400 MHz, CDCl3) δ
(ppm): 7.79 (s, 1H, CH=C), 7.54–7.32 (m, 5H, PhCH2), 5.06 (br s, 1H, NH), 4.22 (d, 2H, J = 5.9 Hz, Hβ), 3.85 (s, 3H, CO2Me), 1.44 (s, 9H, Boc). Physical data agree to those previously reported.[44]
General Procedure for Hydrolysis
of Ring-Opening Products
Method A: The corresponding
ring-opening compound
(0.04 mmol of 13 or 15) was charged in a
round-bottom flask with an aqueous 6 M solution of HCl (1 mL). The
mixture was stirred for 14 h under reflux in an oil bath. The solvent
was evaporated; the residue was dissolved in water (3 mL) and washed
with EtOAc (3 mL). The aqueous phase was evaporated, and the corresponding
amino acid hydrochloride salt (17 or 19)
was obtained as a white solid. Method B: The ring-opening
compound 12 (0.04 mmol) was dissolved in MeOH (2 mL),
and LiOH·H2O (0.4 mmol) was added. The reaction mixture
was stirred at room temperature until the starting materials disappeared
by TLC monitoring (3 h). Then, an aqueous 2 M solution of HCl was
added to give pH 2. The aqueous phase was evaporated, and the amino
acid hydrochloride salt 16 was obtained as a white solid. Method C: The ring-opening compound 14 (0.04
mmol) was dissolved in MeOH (2 mL), and LiOH·H2O (0.4
mmol) was added. The reaction mixture was stirred at room temperature
until the starting materials disappeared by TLC monitoring (3 h).
An aqueous 2 M solution of HCl was added to adjust the pH to 6, and
then CH2Cl2 (1 mL) and TFA (1 mL) were added.
The mixture was stirred at room temperature for 1 h, and the solution
was concentrated in vacuo to afford amino acid hydrochloride salt 18.
Full geometry optimizations
were carried out with Gaussian 16[45] using
the M06-2X hybrid functional[46] and 6-31+G(d,p)
basis set in combination with ultrafine integration grids. Bulk solvent
effects in toluene and tetrahydrofuran were considered implicitly
through the IEF-PCM polarizable continuum model.[47] The possibility of different conformations was taken into
account. Frequency analyses were carried out at the same level used
in the geometry optimizations, and the nature of the stationary points
was determined in each case according to the appropriate number of
negative eigenvalues of the Hessian matrix. The quasiharmonic approximation
reported by Truhlar et al. was used to replace the harmonic oscillator
approximation for calculation of the vibrational contribution to enthalpy
and entropy.[48] Scaled frequencies were
not considered. Mass-weighted intrinsic reaction coordinate (IRC)
calculations were carried out using the Gonzalez and Schlegel scheme[49,50] in order to ensure that the TSs indeed connected the appropriate
reactants and products. The complex nature of the enolate inversion
of 2′ to 2′_epi, which is
also coupled with a conformational change at the oxazolidinone ring,
caused the IRC calculations to fail in both the forward and the reverse
directions. Gibbs free energies (ΔG) were used
for the discussion on the relative stabilities of the considered structures.
The lowest energy conformer for each calculated stationary point was
considered in the discussion; all computed structures can be obtained
from the authors upon request. Cartesian coordinates, electronic energies,
entropies, enthalpies, Gibbs free energies, and lowest frequencies
of the calculated structures are available in the Supporting Information.
X-ray Diffraction Analysis
CCDC 2122265–2122266 contain the supplementary crystallographic data
for this paper. The SHELXL97 program[51] was
used for refinement of the ecrystal structures, and hydrogen atoms
were fitted at theoretical positions.
Determination of the Enantiomeric
Purity of β-Amino Acids 7c and 8c
Following a recent but slightly
modified procedure,[52,53] the corresponding amino acid 7c, 8c, or a mixture of both was dissolved in
D2O to prepare a 0.05 M solution. The pH of these three
solutions was adjusted to 10 with a 1 M KOH solution in D2O. Then, a solution of 8 mg/mL of samarium(III) complex with (S,S)-ethylenediamine-N,N′-disuccinate in D2O was prepared,
and 0.2 mL of this solution was added to each of the corresponding
NMR tubes containing 0.5 mL of a solution of amino acids 7c, 8c, or a mixture of both. The 1H NMR experiments
were registered in a 400 MHz spectrometer at 298 K. Under these conditions,
the doublet corresponding to the CHHbPh signal appears separated by 0.02 ppm for both
enantiomers, allowing their integration. Thus, in the case of β-amino
acid 7c, this signal appears at 2.63 ppm (d, 1H, J = 13.7 Hz), while the same signal in the case of β-amino
acid 8c appears at 2.65 ppm (d, 1H, J = 13.6 Hz). Taking into account that in the spectrum of each amino
acid no signals of the other enantiomer were observed, we conclude
that the enantiomeric purity for each of them is >95:5 (Supporting Information).
Authors: Stefania De Luca; Giuseppe Digilio; Valentina Verdoliva; Michele Saviano; Valeria Menchise; Pablo Tovillas; Gonzalo Jiménez-Osés; Jesus M Peregrina Journal: Org Lett Date: 2018-11-14 Impact factor: 6.005
Authors: Martin J Schnermann; Nicholas L Untiedt; Gonzalo Jiménez-Osés; Kendall N Houk; Larry E Overman Journal: Angew Chem Int Ed Engl Date: 2012-08-24 Impact factor: 15.336
Authors: Pablo Tovillas; Iván García; Paula Oroz; Nuria Mazo; Alberto Avenoza; Francisco Corzana; Gonzalo Jiménez-Osés; Jesús H Busto; Jesús M Peregrina Journal: J Org Chem Date: 2018-04-13 Impact factor: 4.354