Literature DB >> 35725831

Metabolomics with multi-block modelling of mass spectrometry and nuclear magnetic resonance in order to discriminate Haplosclerida marine sponges.

Mehdi A Beniddir1, Laurence Le Moyec2,3, Mohamed N Triba4, Arlette Longeon5, Alexandre Deville5, Alain Blond5, Van Cuong Pham6, Nicole J de Voogd7,8, Marie-Lise Bourguet-Kondracki9.   

Abstract

A comprehensive metabolomic strategy, integrating 1H NMR and MS-based multi-block modelling in conjunction with multi-informational molecular networking, has been developed to discriminate sponges of the order Haplosclerida, well known for being taxonomically contentious. An in-house collection of 33 marine sponge samples belonging to three families (Callyspongiidae, Chalinidae, Petrosiidae) and four different genera (Callyspongia, Haliclona, Petrosia, Xestospongia) was investigated using LC-MS/MS, molecular networking, and the annotations processes combined with NMR data and multivariate statistical modelling. The combination of MS and NMR data into supervised multivariate models led to the discrimination of, out of the four genera, three groups based on the presence of metabolites, not necessarily previously described in the Haplosclerida order. Although these metabolomic methods have already been applied separately, it is the first time that a multi-block untargeted approach using MS and NMR has been combined with molecular networking and statistically analyzed, pointing out the pros and cons of this strategy.
© 2022. Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Haplosclerida sponges; Mass spectrometry; Molecular networking; Multivariate statistical analyses; Nuclear magnetic resonance spectroscopy

Mesh:

Year:  2022        PMID: 35725831     DOI: 10.1007/s00216-022-04158-5

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.478


  34 in total

1.  Combining NMR and LC/MS Using Backward Variable Elimination: Metabolomics Analysis of Colorectal Cancer, Polyps, and Healthy Controls.

Authors:  Lingli Deng; Haiwei Gu; Jiangjiang Zhu; G A Nagana Gowda; Danijel Djukovic; E Gabriela Chiorean; Daniel Raftery
Journal:  Anal Chem       Date:  2016-08-01       Impact factor: 6.986

2.  Statistically correlating NMR spectra and LC-MS data to facilitate the identification of individual metabolites in metabolomics mixtures.

Authors:  Xing Li; Huan Luo; Tao Huang; Li Xu; Xiaohuo Shi; Kaifeng Hu
Journal:  Anal Bioanal Chem       Date:  2019-02-21       Impact factor: 4.142

Review 3.  Natural products targeting strategies involving molecular networking: different manners, one goal.

Authors:  Alexander E Fox Ramos; Laurent Evanno; Erwan Poupon; Pierre Champy; Mehdi A Beniddir
Journal:  Nat Prod Rep       Date:  2019-05-29       Impact factor: 13.423

Review 4.  Accelerating Metabolite Identification in Natural Product Research: Toward an Ideal Combination of Liquid Chromatography-High-Resolution Tandem Mass Spectrometry and NMR Profiling, in Silico Databases, and Chemometrics.

Authors:  Jean-Luc Wolfender; Jean-Marc Nuzillard; Justin J J van der Hooft; Jean-Hugues Renault; Samuel Bertrand
Journal:  Anal Chem       Date:  2018-12-14       Impact factor: 6.986

5.  Combined Nuclear Magnetic Resonance Spectroscopy and Mass Spectrometry Approaches for Metabolomics.

Authors:  Marine P M Letertre; Gaud Dervilly; Patrick Giraudeau
Journal:  Anal Chem       Date:  2020-11-06       Impact factor: 6.986

Review 6.  NMR: Unique Strengths That Enhance Modern Metabolomics Research.

Authors:  Arthur S Edison; Maxwell Colonna; Goncalo J Gouveia; Nicole R Holderman; Michael T Judge; Xunan Shen; Sicong Zhang
Journal:  Anal Chem       Date:  2020-11-12       Impact factor: 6.986

Review 7.  Marine natural products.

Authors:  Anthony R Carroll; Brent R Copp; Rohan A Davis; Robert A Keyzers; Michèle R Prinsep
Journal:  Nat Prod Rep       Date:  2020-02-26       Impact factor: 13.423

8.  Metabolomics beyond spectroscopic databases: a combined MS/NMR strategy for the rapid identification of new metabolites in complex mixtures.

Authors:  Kerem Bingol; Lei Bruschweiler-Li; Cao Yu; Arpad Somogyi; Fengli Zhang; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2015-03-12       Impact factor: 6.986

9.  Accurate and Efficient Determination of Unknown Metabolites in Metabolomics by NMR-Based Molecular Motif Identification.

Authors:  Cheng Wang; Bo Zhang; István Timári; Árpád Somogyi; Da-Wei Li; Haley E Adcox; John S Gunn; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2019-12-03       Impact factor: 6.986

Review 10.  Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches.

Authors:  Mehdi A Beniddir; Kyo Bin Kang; Grégory Genta-Jouve; Florian Huber; Simon Rogers; Justin J J van der Hooft
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

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