Literature DB >> 35719301

SAXSDOG: open software for real-time azimuthal integration of 2D scattering images.

Max Burian1, Christian Meisenbichler1, Denys Naumenko1, Heinz Amenitsch1.   

Abstract

In situ small- and wide-angle scattering experiments at synchrotrons often result in massive quantities of data within just seconds. Especially during such beamtimes, processing of the acquired data online, without appreciable delay, is key to obtaining feedback on the failure or success of the experiment. This had led to the development of SAXSDOG, a Python-based environment for real-time azimuthal integration of large-area scattering images. The software is primarily designed for dedicated data pipelines: once a scattering image is transferred from the detector onto the storage unit, it is automatically integrated and pre-evaluated using integral parameters within milliseconds. The control and configuration of the underlying server-based processes is achieved via a graphical user interface, SAXSLEASH, which visualizes the resulting 1D data together with integral classifiers in real time. SAXSDOG further includes a portable 'take-home' version for users that runs on standalone computers, enabling its use in laboratories or at the preferred workspace. © Max Burian et al. 2022.

Entities:  

Keywords:  SAXS; SAXSDOG; azimuthal integration; computer programs; small-angle X-ray scattering

Year:  2022        PMID: 35719301      PMCID: PMC9172040          DOI: 10.1107/S1600576722003685

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   4.868


  15 in total

Review 1.  A practical guide to small angle X-ray scattering (SAXS) of flexible and intrinsically disordered proteins.

Authors:  Alexey G Kikhney; Dmitri I Svergun
Journal:  FEBS Lett       Date:  2015-08-29       Impact factor: 4.124

2.  Free jet micromixer to study fast chemical reactions by small angle X-ray scattering.

Authors:  Benedetta Marmiroli; Gianluca Grenci; Fernando Cacho-Nerin; Barbara Sartori; Enrico Ferrari; Peter Laggner; Luca Businaro; Heinz Amenitsch
Journal:  Lab Chip       Date:  2009-04-09       Impact factor: 6.799

3.  On-the-Fly Data Assessment for High-Throughput X-ray Diffraction Measurements.

Authors:  Fang Ren; Ronald Pandolfi; Douglas Van Campen; Alexander Hexemer; Apurva Mehta
Journal:  ACS Comb Sci       Date:  2017-05-24       Impact factor: 3.784

4.  Xi-cam: a versatile interface for data visualization and analysis.

Authors:  Ronald J Pandolfi; Daniel B Allan; Elke Arenholz; Luis Barroso-Luque; Stuart I Campbell; Thomas A Caswell; Austin Blair; Francesco De Carlo; Sean Fackler; Amanda P Fournier; Guillaume Freychet; Masafumi Fukuto; Dogˇa Gürsoy; Zhang Jiang; Harinarayan Krishnan; Dinesh Kumar; R Joseph Kline; Ruipeng Li; Christopher Liman; Stefano Marchesini; Apurva Mehta; Alpha T N'Diaye; Dilworth Y Parkinson; Holden Parks; Lenson A Pellouchoud; Talita Perciano; Fang Ren; Shreya Sahoo; Joseph Strzalka; Daniel Sunday; Christopher J Tassone; Daniela Ushizima; Singanallur Venkatakrishnan; Kevin G Yager; Peter Zwart; James A Sethian; Alexander Hexemer
Journal:  J Synchrotron Radiat       Date:  2018-05-31       Impact factor: 2.616

5.  Small Angle X-ray Scattering for Nanoparticle Research.

Authors:  Tao Li; Andrew J Senesi; Byeongdu Lee
Journal:  Chem Rev       Date:  2016-04-07       Impact factor: 60.622

6.  The fast azimuthal integration Python library: pyFAI.

Authors:  Giannis Ashiotis; Aurore Deschildre; Zubair Nawaz; Jonathan P Wright; Dimitrios Karkoulis; Frédéric Emmanuel Picca; Jérôme Kieffer
Journal:  J Appl Crystallogr       Date:  2015-03-24       Impact factor: 3.304

Review 7.  Advanced grazing-incidence techniques for modern soft-matter materials analysis.

Authors:  Alexander Hexemer; Peter Müller-Buschbaum
Journal:  IUCrJ       Date:  2015-01-01       Impact factor: 4.769

8.  Quantitative evaluation of statistical errors in small-angle X-ray scattering measurements.

Authors:  Steffen M Sedlak; Linda K Bruetzel; Jan Lipfert
Journal:  J Appl Crystallogr       Date:  2017-03-29       Impact factor: 3.304

9.  Performance of single-photon-counting PILATUS detector modules.

Authors:  P Kraft; A Bergamaschi; Ch Broennimann; R Dinapoli; E F Eikenberry; B Henrich; I Johnson; A Mozzanica; C M Schlepütz; P R Willmott; B Schmitt
Journal:  J Synchrotron Radiat       Date:  2009-04-07       Impact factor: 2.616

10.  BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis.

Authors:  Jesse Bennett Hopkins; Richard E Gillilan; Soren Skou
Journal:  J Appl Crystallogr       Date:  2017-09-05       Impact factor: 3.304

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