| Literature DB >> 35706529 |
Jie Jia1,2, Ji-Qun Yang3, Ying-Rong Du3, Yu Xu2, Deshenyue Kong1,2, Xiu-Ling Zhang3, Jun-Hong Mao1,2, Gui-Fang Hu3, Kun-Hua Wang1,2,4, Yi-Qun Kuang1,2.
Abstract
Background: Hypertension is a common complication in injection drug users (IDU), especially a high proportion of resistant hypertension occurs among them. However, the involving mechanisms remain largely unknown.Entities:
Keywords: drug use; hypertension; immunoregulation; transcriptome; treatment-resistant
Year: 2022 PMID: 35706529 PMCID: PMC9191201 DOI: 10.2147/JIR.S361634
Source DB: PubMed Journal: J Inflamm Res ISSN: 1178-7031
Primer Sequences Used for Quantitative Reverse Transcription PCR (qRT-PCR) in This Study
| Transcript | Primer | Sequence (5’ - 3’) | Product Length (bp) |
|---|---|---|---|
| IGHA2 | Sense | TCGACTCACCATATTCGTAGACA | 125 |
| Antisense | CGAACCAGCCATAAGGACCC | ||
| PI3 | Sense | CACGGGAGTTCCTGTTAAAGG | 213 |
| Antisense | TCTTTCAAGCAGCGGTTAGGG | ||
| Antisense | AGCAACAGCCAGCCGATA | ||
| FOS | Sense | GGGGCAAGGTGGAACAGTTAT | 121 |
| Antisense | CCGCTTGGAGTGTATCAGTCA | ||
| SLPI | Sense | AGAGTGACTGGCAGTGTCC | 100 |
| Antisense | TTCCTCCTTGTTGGGTTT | ||
| GAPDH | Sense | GGACCTGACCTGCCGTCTAG | 100 |
| Antisense | GTAGCCCAGGATGCCCTTGA |
Figure 1Differentially expressed genes (DEGs) among IDU-DS, Ctrl-DS and IDU-DR. (A) Volcano plot of DEGs. The left panel shows the volcano plot of DEGs between Ctrl-DS and IDU-DS; the middle panel shows the volcano plot of DEGs between Ctrl-DS and IDU-DR; the right panel shows the volcano plot of DEGs between IDU-DS and IDU-DR. The significant DEGs were defined as genes with a p ≤ 0.01 and |log2(FC)| ≥ 2. DEGs with green marker indicates down-expressed and red marker indicates up-expressed in Ctrl-DS (The left and middle panel). In the right panel, DEGs with green marker indicate down-expressed and red marker indicates up-expressed in IDU-DS. (B) Violin plots showing expression of the most significant DEGs among IDU-DS, Ctrl-DS and IDU-DR. (C) Venn diagrams of the numbers of DEGs among IDU-DS, Ctrl-DS and IDU-DR. (D) Validation of transcripts of genes with a 5-fold difference by quantitative reverse transcription PCR (RT-qPCR). Data are presented as mean ± SEM (n = 3). GAPDH was used as a housekeeping internal control. Transcript expression was quantified relative to the expression level of GAPDH by the 2−ΔΔCT method. The statistical significance was indicated as *p < 0.05, and **p < 0.001.
Figure 2Bioinformatics analysis for significant DEGs. (A) GO enrichment of significant DEGs between Ctrl-DS and IDU-DS, IDU-DR and IDU-DS, Ctrl-DS and IDU-DR. (B) Heatmap diagrams of DEGs expression show the similarity of gene expression patterns in Ctrl-DS and IDU-DS groups. Red indicates up-expressed mRNAs, and blue indicates down-expressed mRNAs. (C) PPI network of the DEGs between Ctrl-DS and IDU-DS, Ctrl-DS and IDU-DR. DEGs with red marker indicate up-regulated genes, and green marker indicates down-expressed in IDU-DS (upper panel of the figure) and IDU-DR (lower panel of the figure). The middle panel of the figure shows common DEGs in IDU-DS and IDU-DR compared with Ctrl-DS, the red marker indicates up-expressed, and the green marker indicates down-expressed in both groups.
Figure 3Weighted gene co-expression network analysis for genes with FPKM > 1. (A) Cluster dendrogram of genes, Upper portion of the figure is the gene cluster tree. A leaf represents a gene while the branches represent different gene modules. Different colors in the middle portion of the dynamic tree cut represent different modules. The lower portion of the figure shows the correlation between the module and the sample, red indicates positive correlation and blue indicates negative correlation. (B) The details of module – sample relationships. The numbers represent the correlation between the module and the sample. Closer the value is to 1, the stronger the positive correlation between the module and the sample; closer to −1, the stronger the negative correlation. The number in brackets represents the value of p. (C) Network heatmap of the gene modules. The tree represents a module (top and left), and the branch represents a gene. The darker the color of the dot (white → yellow → red), the stronger the connectivity between the two genes corresponding to the row and column.
Figure 4Bioinformatics analysis for hub genes of MEbrown, ME turquoise and MEmagenta. (A) Scatterplot of gene significance (y-axis) vs module membership (x-axis). The hub genes were selected with gene significance > 0.1 and module membership > 0.9. (B) PPI network analysis of the hub genes. The grayscale value of each line correlates with the degree of interaction. (C) GO enrichment of the hub genes.
Figure 5Immune cell abundance in peripheral blood of patients with hypertension. The y-axis indicates the relative abundance of cells. The upward triangle indicates individuals with higher abundance of immune cells, and the downward triangle indicates individuals with lower abundance of immune cells. *p < 0.05, **p < 0.01 and *** p <0.001.