| Literature DB >> 35701833 |
Hiroaki Taniguchi1,2, Yasunori Suzuki1, Kohzoh Imai3, Yasushi Adachi4.
Abstract
Oligonucleotide therapeutics, drugs consisting of 10-50 nucleotide-long single- or double-stranded DNA or RNA molecules that can bind to specific DNA or RNA sequences or proteins, include antisense oligonucleotides (ASOs), small interfering RNAs (siRNAs), microRNAs (miRNAs), aptamers, and decoys. These oligonucleotide therapeutics could potentially become the third pillar of drug development. In particular, ASOs and siRNAs are advanced tools that are widely used to silence gene expression. They are used in clinical trials, as they have high specificity for target mRNAs and non-coding RNAs and limited toxicity. However, their clinical application remains challenging. Although chemotherapy has benefits, it has severe adverse effects in many patients. Therefore, new modalities for targeted molecular therapy against tumors, including oligonucleotide therapeutics, are required, and they should be compatible with diagnosis using next-generation sequencing. This review provides an overview of the therapeutic uses of ASOs, siRNAs, and miRNAs in clinical studies on malignant tumors. Understanding previous research and development will help in developing novel oligonucleotide therapeutics against malignant tumors.Entities:
Keywords: antisense oligonucleotide; drug delivery; microRNA; oligonucleotide therapeutics; small interfering RNA
Mesh:
Substances:
Year: 2022 PMID: 35701833 PMCID: PMC9459246 DOI: 10.1111/cas.15461
Source DB: PubMed Journal: Cancer Sci ISSN: 1347-9032 Impact factor: 6.518
FIGURE 1Strategies to overcome difficulties associated with oligonucleotide therapeutics
FIGURE 2Drug delivery system (DDS) for oligonucleotide therapeutics
FIGURE 3Modes of action of antisense oligonucleotides (ASOs) and small interfering RNAs (siRNAs). (A) Gapmer‐type ASO binds to the target RNA and forms the RNA/DNA heteroduplex in the central gap region, and RNase H cleaves the RNA strand of the heteroduplex. (B) Effect of siRNA. siRNA is composed of two complementary strands, the passenger strand and the guide strand. The latter binds to AGO2, inducing the degradation of complementary mRNA
List of antisense oligonucleotides (ASOs) in clinical trials
| Development product name | Target | Application | Stage | Development company/University | NCT# |
|---|---|---|---|---|---|
| Ongoing clinical trials | |||||
| AZD4785/IONIS‐KRAS‐2.5Rx | KRAS | Advanced solid tumors | Phase I | AstraZeneca | NCT03101839 |
| AZD5312/IONIS‐AR‐2.5RX/ARRx | Androgen receptor (AR) | Cancer – prostatic | Phase I/II | University of Michigan Rogel Cancer Center | NCT03300505 NCT02144051 |
| BP1001/Prexigebersen | GRB‐2 | Cancer | Phase I/II | Bio‐Path Holdings | NCT04196257 |
| NCT02923986 | |||||
| NCT02781883 | |||||
| NCT01159028 | |||||
| BP1002 | Bcl‐2 | Advanced lymphoid malignancy | Phase I | Bio‐Path Holdings | NCT04072458 |
| EZN‐2968/Anti‐HIF‐1a/LNA AS ODN | HIF‐1a | Solid tumor | Phase I | National Cancer Institute (NCI) | NCT01120288 |
| NCT00466583 | |||||
| NCT02564614 | |||||
| EZN‐4176 | AR exon 4 | Prostatic neoplasm | Phase I | Enzon Pharmaceuticals | NCT01337518 |
| G4460/C‐MYB asODN | C‐Myb | Hematological malignancy | Phase II | Abramson Cancer Center of the University of Pennsylvania | NCT00002592 |
| GRN163L/Imetelstat® | RNA component of telomerase | Cancer | Phase II/III | Geron Corporation | NCT02598661 |
| GTI‐2040 | R2 component of R2 | Cancer | Phase II | Aptose Biosciences | NCT00565058 |
| NCT00068588 | |||||
| NCT00087165 | |||||
| IGV‐001/IGF‐1R/AS ODN | IGF‐1R | Glioblastoma | Phase I Phase II | David Andrews, Thomas Jefferson University | NCT02507583 |
| NCT01550523 NCT04485949 | |||||
| IONIS‐STAT3RX/AZD9150/Danvatirsen | STAT3 | Cancer | Phase I/II | Ionis Pharmaceuticals | NCT01563302 NCT02417753 |
| ISIS 5132/CGP69846A | C‐Raf‐1 | Ovarian/breast cancer | Phase II | Eastern Cooperative Oncology Group | NCT00003236 |
| NCT00003892 | |||||
| LErafAON‐ETU | C‐Raf‐1 | Cancer | Phase I | INSYS Therapeutics | NCT00100672 |
| LY900003/ISIS 3521 | PKC‐α | Cancer | Phase III | Ionis Pharmaceuticals | NCT00017407 |
| NCT00034268 | |||||
| MRG‐106/Cobomarsen | miR‐155 | Cutaneous T‐cell lymphoma/mycosis fungoides | Phase I/II | miRagen Therapeutics | NCT02580552 |
| NCT03713320 | |||||
| NCT03837457 | |||||
| OGX‐011/Custirsen | Clusterin | Cancer | Phase III | Achieve Life Sciences | NCT01188187 |
| NCT01578655 | |||||
| OGX‐427/Apatorsen | HSP27 | Cancer | Phase II | British Columbia Cancer Agency | NCT01120470 |
| NCT02423590 | |||||
| NCT01829113 NCT01780545 | |||||
| NCT01454089 | |||||
| RO7070179 | HIF‐1a | Hepatocellular carcinoma | Phase I | Hoffmann‐La Roche | NCT02564614 |
| SPC2996 | Bcl‐2 | Chronic lymphocytic leukemia | Phase I/II | Santaris Pharma A/S | NCT00285103 |
| Discontinued and terminated clinical trials | |||||
| AEG35156 | XIAP | Cancer | Phase II | Aegera Therapeutics | NCT00363974 |
| Multiple studies terminated | NCT00882869 NCT00558545 NCT00557596 | ||||
| EL625/Cenersen/Aezeaa | P53 | Myelodysplastic syndromes/Leukemia/Lymphoma | Phase II, Terminated | Eleos | NCT00074737 |
| G3139/Oblimersen/Genasenseb | Bcl‐2 | Cancer/Waldenstroms Macroglobulinemia | Phase II/III, Terminated | M.D. Anderson Cancer Center | NCT00030641 NCT00017602 NCT00016263 NCT00024440 NCT01200342 |
| NCT00543205 | |||||
| VEGF‐AS/Veglinb | VEGF | Mesothelioma | Phase I/II, Terminated | University of Southern California | NCT00668499 |
Note: Termination reasons are (a) lack of funding and (b) withdrawn from business.
List of siRNAs in clinical trials
| Development product name | Target | DDS | Application | Stage | Development company/hospital | NCT# and others |
|---|---|---|---|---|---|---|
| Ongoing clinical trials | ||||||
| ALN‐VSP02 | KSP/VEGF | SNALP | Hepatocellular carcinoma | Phase I | Alnylam Pharmaceuticals | NCT00882180 |
| NCT01158079 | ||||||
| APN 401 | Cbl‐b | none (in vitro electroporation) | Solid tumors | Phase I | APEIRON Biologic | NCT03087591 |
| ARO‐HIF2 | HIF2α | Undisclosed (TRiM™ platform) | Clear cell renal cell carcinoma | Phase I | Arrowhead Pharmaceuticals | NCT04169711 |
| Atu027 | PKN3 | AtuPLEX | Pancreatic carcinoma | Phase Ib/IIa | Silence Therapeutics | NCT00938574 |
| NCT01808638 | ||||||
| EPHARNA | EphA2 | DOPC | Solid tumors | Phase I | M.D. Anderson Cancer Center | NCT01591356 |
| iExosomes | KRASG12D | Exosome | Pancreatic Cancer | Phase I | M.D. Anderson Cancer Center | NCT03608631 |
| NBF‐006 | GST‐π | LNP | NSCLC | Phase I | Nitto BioPharma | NCT03819387 |
| NU‐0129 | BCL2L12 | Gold core SNP | Recurrent glioblastoma/gliosarcoma | Early Phase I | Northwestern University | NCT03020017 |
| siG12D‐LODER | KRASG12D | LODER (bio‐degradable matrix) | Pancreatic cancer/pancreatic ductal carcinoma | Phase II | Silenseed | NCT01676259 |
| SRN‐14 | PRDM14 | PEG‐PLO | Breast cancer | Phase I | The Cancer Institute Hospital Of JFCR | (jRCT2031190181) |
| STNM01 | CHST15 | ‐ | Pancreatic cancer | Phase IIa | Keio University | (jRCT2031190055) |
| STP705 | TGF‐β1/COX‐2 | Polypeptide nanoparticle (PNP) | Hepatocellular carcinoma /isSCC, Bowen's disease | Phase I/II | Sirnaomics | NCT04676633 |
| NCT04293679 | ||||||
| NCT04844983 | ||||||
| SXL01 | AR | Undisclosed | Prostate cancer | Phase I | Institut Claudius Regaud | NCT02866916 |
| TKM‐080301 | PLK1 | SNALP | Hepatocellular carcinoma | Phase I/II | Arbutus Biopharma | NCT02191878 |
| NCT01262235 | ||||||
| Discontinued and terminated clinical trials | ||||||
| Development product name | Target | DDS | Application | Stage | Development company/hospital | NCT# and others |
| CALAA‐01 | RRM2 | CAL101/AD‐PEG/AD‐PEG‐Tf | Solid tumors | Phase I, terminated | Calando Pharmaceuticals | NCT00689065 |
| DCR‐MYCa | c‐Myc | LNP | Hepatocellular carcinoma | Phase Ib/2, terminated | Dicerna Pharmaceuticals | NCT02314052 |
| Nek2 siRNA | Nek2 | Atelocollagen | Pancreatic Cancer | Phase I, terminated | Nagoya University | (UMIN000016330) |
| TDM‐812b | RPN2 | A6K | Breast cancer | Phase I, terminated | St. Luke’s International Hospital | (jRCT2031200057) |
Note: Termination reasons are (a) withdrawn from business and (b) COVID‐19 pandemic.