| Literature DB >> 35699227 |
Sofus Sølyst1,2, Riina Oksjoki3, Stense Farholt4,5, Dorte Guldbrand Nielsen3, Alex H Christensen2,6, Christina R Fagerberg7, Lotte Risom1, Pernille Axél Gregersen8, Maria Bejerholm Christensen1, Torsten Bloch Rasmussen3, Birgitte Rode Diness1,2.
Abstract
The study describes all patients in Denmark with vascular Ehlers-Danlos syndrome (vEDS). Carriers of pathogenic or likely pathogenic COL3A1 variants were retrospectively identified through registries and specialized clinics. Medical records were reviewed for vascular- or organ ruptures and invasive procedures performed. Identified families were divided by variant type (null, splice, and missense) and familial phenotypes (severe or attenuated). Families in which at least one carrier has suffered a major event before the age of 30 were classified as severe, whereas families in which at least three carriers had reached the age of 40 without a major event were classified as attenuated. Eighty-seven persons (59 still alive) from 25 families were included with a mean observation time of 44 years. Sixty-seven percent of patients could be subclassified in a familial phenotype. Thirty-one major events were observed. Eleven complications in 172 invasive procedures were recorded. No fatal complications to elective surgery were observed. The type of COL3A1 variant did not reliably predict phenotype, but a pattern of intrafamilial consistency emerged with some families showing an attenuated form of vEDS. Elective medical procedures appear to be safer than previously thought, although data only allow for conclusions regarding individuals from families with the attenuated form of vEDS.Entities:
Keywords: COL3A1; genotype-phenotype; surgical complications; vEDS; vascular EDS; vascular Ehlers-Danlos syndrome
Mesh:
Substances:
Year: 2022 PMID: 35699227 PMCID: PMC9544160 DOI: 10.1111/cge.14176
Source DB: PubMed Journal: Clin Genet ISSN: 0009-9163 Impact factor: 4.296
Classification of families
| Family number | No. of carriers | Familial phenotype |
| Predicted consequence | Variant type | ACMG Classification |
|---|---|---|---|---|---|---|
| 1 | 1 | Severe | Complete deletion | — | Null | Pathogenic (PVS1, PM2, PP3, PP4) |
| 2 | 4 | Unclassified | c.202dupG | p.Asp68Glyfs*33 | Null | Pathogenic (PVS1, PM2, PP1) |
| 3 | 4 | Unclassified | c.413delC | p.Pro138Leufs*27 | Null | Pathogenic (PVS1, PM2, PP1) |
| 4 | 1 | Unclassified | c.636 + 4A > T |
Reduced strength of splice donor site at exon 7 (MaxEntScan score 9.1 > 5.0) | Splice site | Pathogenic (PS3, PM2, PP4, PP5) |
| 5 | 3 | Severe | c.970G > A | p.Gly324Ser | Missense | Pathogenic (PM1, PM2, PP1, PP2, PP3, PP4) |
| 6 | 13 | Attenuated | c.989G > A | p.Gly330Asp | Missense | Pathogenic (PM1, PM2, PP1, PP2, PP3) |
| 7 | 1 | Unclassified | c.1223G > A | p.Gly408Glu | Missense | Pathogenic (PM1, PM2, PM5, PP2, PP3, PP5) |
| 8 | 3 | Attenuated | c.1455 + 5G > A | Reduced strength of splice donor site at exon 20 (MaxEntScan score 9.2 > 3.8) | Splice site | Pathogenic (PS3, PM2, PM4, PP1, PP3) |
| 9 | 2 | Unclassified | c.1573G > A | p.Gly525Ser | Missense | Likely Pathogenic (PM1, PM2, PP1, PP2, PP3) |
| 10 | 1 | Unclassified | c.1662 + 5G > A | Reduced strength of splice donor site at exon 23 (MaxEntScan score 5.5 > −) | Splice site | Pathogenic (PS2, PS3, PM2, PM4, PM6) |
| 11 | 10 | Attenuated | c.1691G > A | p.Gly564Asp | Missense | Pathogenic (PM1, PM2, PM5, PP1, PP2, PP3) |
| 12 | 1 | Severe | c.1923 + 1G > A | Reduced strength of splice donor site at exon 27 (MaxEntScan score 7.6 > −) | Splice site | Pathogenic (PVS1, PM2, PP5) |
| 13 | 3 | Unclassified | c.2283 + 1G > A | Reduced strength of splice donor site at exon 32 (MaxEntScan score 9.3 > −) | Splice site | Pathogenic (PVS1, PM2, PP5) |
| 14 | 4 | Unclassified | c.2510G > A | p.Gly192Ser | Missense | Pathogenic (PM1, PM2, PP1, PP2, PP3, PP5) |
| 15 | 5 | Unclassified | c.2689G > A | p.Gly897Ser | Missense | Pathogenic (PM1, PM2, PM5, PP1, PP5, PP2, PP3) |
| 16 | 1 | Severe | c.2915G > A | p.Gly972Asp | Missense | Pathogenic (PM1, PM2, PM5, PP5, PP2, PP3) |
| 17 | 1 | Severe | c.3039 + 2 T > G | Reduced strength of splice donor site at exon 41 (MaxEntScan score 7.8 > −) | Splice site | Pathogenic (PVS1, PM2, PP3) |
| 18 | 13 | Attenuated | c.3256‐1G > A | Introduction of novel splice acceptor site 1 bp inside exon 45 (MaxEntScan score 5.0) | Splice site | Pathogenic (PVS1, PM2, PP1, PP5) |
| 19 | 2 | Unclassified | c.3302G > T | p.Gly1101Val | Missense | Pathogenic (PM1, PM2, PM5, PP1, PP2, PP3, PP5) |
| 20 | 6 | Attenuated | c.3325C > T | p.Arg1109* | Null | Pathogenic (PVS1, PM2, PP1, PP5,) |
| 21 | 1 | Severe | c.3418‐2A > C | Reduced strength of splice acceptor site at exon 47 (MaxEntScan score 6.2 > −) | Splice site | Pathogenic (PVS1, PS2, PM2, PM6) |
| 22 | 1 | Severe | c.3418G > A |
p.Gly1140Arg Reduced strength of splice acceptor site at exon 47 (MaxEntScan score 6.2 > 4.9) | Missense | Pathogenic (PS3, PM1, PM2, PP3, PM5, PP2) |
| 23 | 1 | Unclassified | c.3490G > T | p.Gly1164Trp | Missense | Pathogenic (PS3, PM1, PM2, PM5, PM6, PP2, PP3, PP5) |
| 24 | 1 | Unclassified | c.3490G > A | p.Gly1164Arg | Missense | Pathogenic (PS1, PM1, PM2, PM5, PP2, PP3, PP5) |
| 25 | 4 | Severe | c.3509G > A | p.Gly1170Asp | Missense | Pathogenic (PM1, PM2, PM5, PP1, PP2, PP3, PP5) |
FIGURE 2COL3A1(NM_000090.3) with variants detected in 25 families with vEDS; one family had a complete deletion (not shown). Boxes represent exons with background pattern denoting protein domains of type III pre‐procollagen. Variants are coded according to the severity of the familial phenotype: attenuated (italic), severe (underlined), and unclassified (normal)
Distribution of genetic variant type by familial phenotype
| Variant Type | All variants | Attenuated | Unclassified | Severe |
|---|---|---|---|---|
| Number of families (%) | ||||
| Total variants | 25 | 5 (20) | 12 (48) | 8 (32) |
| Null | 4 (16) | 1 (25) | 2 (50) | 1 (25) |
| Splice site | 8 (32) | 2 (25) | 3 (38) | 3 (38) |
| Missense | 13 (52) | 2 (15) | 8 (54) | 4 (31) |
Characteristics of patients categorized by familial phenotype
| Characteristics | All patients | Attenuated | Severe | Unclassified |
|---|---|---|---|---|
| Number of patients (%) | ||||
| Total | 87 | 45 (52) | 13 (15) | 29 (33) |
| Index patients | 25 (29) | 5 (11) | 8 (61) | 12 (41) |
| Relatives | 62 (71) | 40 (89) | 5 (38) | 17 (59) |
| Females | 42 (48) | 20 (44) | 6 (46) | 16 (55) |
| Index patients | 14 (56) | 2 (40) | 5 (63) | 7 (58) |
| Relatives | 28 (45) | 18 (45) | 1 (20) | 9 (53) |
| Major events | 32 (36) | 16 (36) | 9 (69) | 7 (24) |
| Index patients | 16 (64) | 3 (60) | 8 (100) | 5 (42) |
| Relatives | 16 (26) | 13 (33) | 1 (20) | 2 (12) |
| Characteristic facial features | 36 (62) | 11 (46) | 9 (82) | 16 (70) |
| Index patients | 13 (72) | 0 | 6 (86) | 7 (78) |
| Relatives | 23 (58) | 11 (50) | 3 (75) | 9 (64) |
| Thin, translucent skin | 21 (35) | 3 (12) | 9 (82) | 9 (38) |
| Index patients | 12 (60) | 1 (33) | 5 (71) | 6 (60) |
| Relatives | 9 (23) | 2 (9.1) | 4 (100) | 3 (21) |
| Easy bruising | 29 (48) | 11 (44) | 7 (63) | 11 (46) |
| Index patients | 13 (65) | 2 (67) | 4 (57) | 7 (70) |
| Relatives | 16 (40) | 9 (41) | 3 (75) | 4 (29) |
| Clubfoot | 7 (11) | 1 (3.8) | 4 (33) | 2 (8) |
| Index patients | 4 (18) | 0 | 2 (29) | 2 (18) |
| Relatives | 3 (7.3) | 1 (4.5) | 2 (40) | 0 |
| Years (range) | ||||
| Mean age at ascertainment | 41 (0–93) | 49 (2–93) | 21 (0–55) | 37 (0–73) |
| Index patients | 32 (2–70) | 43 (31–55) | 21 (12–30) | 35 (2–70) |
| Relatives | 45 (0–93) | 50 (2–93) | 22 (0–55) | 39 (0–73) |
| Mean age at the first major event or death | 48 (12–93) | 58 (38–93) | 25 (12–55) | 51 (37–68) |
| Index patients | 36 (12–68) | 49 (41–54) | 22 (12–28) | 49 (37–68) |
| Relatives | 58 (18–93) | 60 (38–93) | 37 (18–55) | 58 (52–63) |
| Number of exposures (%) | ||||
| Total interventions | 172 | 72 (42) | 46 (27) | 54 (31) |
| Complications | 11 (6.4) | 4 (5.6) | 2 (4.3) | 5 (9.3) |
| Vascular procedures | 24 (14) | 11 (15) | 7 (15) | 6 (11) |
| Complications | 4 (17) | 1 (9.1) | 2 (29) | 1 (17) |
| Surgery of the abdomen | 39 (23) | 23 (32) | 6 (13) | 10 (19) |
| Complications | 4 (10) | 2 (8.7) | 0 | 2 (20) |
| Endoscopies | 24 (14) | 13 (18) | 1 (2.0) | 10 (19) |
| Complications | 0 | 0 | 0 | 0 |
| Orthopedic surgery | 33 (19) | 10 (14) | 16 (35) | 7 (13) |
| Complications | 1 (4.2) | 0 | 0 | 1 (14) |
| NANEE | 26 (15) | 6 (8.3) | 9 (20) | 11 (20) |
| Complications | 0 | 0 | 0 | 0 |
| Other procedures | 26 (15) | 9 (13) | 7 (15) | 10 (19) |
| Complications | 2 (7.7) | 1 (11) | 0 | 1 (10) |
Percentages given in relation to the number of patients assessed for the attribute.
If no major events were reported for a deceased subject, the date of death was used in its stead. Living patients with no known major complications were disregarded.
Surgery and invasive diagnostic procedures of the neck, airways, nose, ears, or eyes.
Other procedures include cesarean section, male and female sterilization, phimosis surgery, lumbar puncture, bone marrow biopsy et cetera.
FIGURE 1Kaplan–Meier plots comparing the age at the first major event or death. Ticks represent censuring. (A) Patients are categorized according to genetic variant types. The solid line represents missense, the dashed line splice site, and the dotted line null variants. (B) Patients are categorized according to familial phenotype. The solid line represents severe, the dotted line attenuated, and the dashed line unclassified familial phenotype