| Literature DB >> 35693946 |
Luca Piacentini1,2, Chiara Vavassori1,3, Gualtiero I Colombo1.
Abstract
Abdominal aortic aneurysm (AAA) is a chronic, life-threatening vascular disease whose only therapeutic option is a surgical repair to prevent vessel rupture. The lack of medical therapy results from an inadequate understanding of the etiopathogenesis of AAA. Many studies in animal and human models indicate a 'short-circuiting' of the regulation of the inflammatory-immune response as a major player in the AAA chronic process. In this regard, perivascular adipose tissue (PVAT) has received increasing interest because its dysfunction affects large arteries primarily through immune cell infiltration. Consistently, we have recently produced evidence that innate and adaptive immune cells present in the PVAT of AAAs contribute to sustaining a damaging inflammatory loop. However, it is still unclear how the complex crosstalk between adaptive and innate immunity can be self-sustaining. From our perspective, trained immunity may play a role in this crosstalk. Trained immunity is defined as a form of innate immune memory resulting in enhanced responsiveness to repeated triggers. Specific innate stimuli and epigenetic and metabolic reprogramming events induce and shape trained immunity in myeloid progenitor cells improving host defense, but also contributing to the progression of immune-mediated and chronic inflammatory diseases. Here we present this hypothesis with data from the literature and our observations to support it.Entities:
Keywords: abdominal aortic aneurysm; epigenetic markers; immune response; perivascular adipose tissue; trained immunity
Year: 2022 PMID: 35693946 PMCID: PMC9174671 DOI: 10.3389/fcell.2022.886086
Source DB: PubMed Journal: Front Cell Dev Biol ISSN: 2296-634X
Predicted histone modifications associated with overexpressed genes in perivascular adipose tissue of small and large abdominal aortic aneurysms.
| Feature | Reference | Description | NES |
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| ENCFF001TAS (E124) | ENCODE | H4K20me1 in ChIP-seq on human monocytes CD14+ | 6.47 |
| E127-H3K36me3-broadpeak | ENCODE | H3K36me3 in NHEK-Epidermal Keratinocyte Primary Cells | 6.17 |
| E039-H3K27ac-broadpeak | Roadmap | H3K27ac in Primary T helper naive cells from peripheral blood | 5.28 |
| E041-H3K36me3-broadpeak | Roadmap | H3K36me3 in Primary T helper cells PMA-I stimulated | 5.03 |
| E025-H3K36me3-broadpeak | Roadmap | H3K36me3 in Adipose-derived Mesenchymal Stem Cell cultured cells | 4.85 |
| ENCFF001TBR (E126) | ENCODE | H3K9ac in ChIP-seq on human NHDF-Ad | 4.79 |
| E124-H3K9ac-broadpeak | ENCODE | H3K9ac in Monocytes-CD14+ RO01746 Primary Cells | 4.58 |
| E126-H3K9ac-broadpeak | ENCODE | H3K9ac in NHDF-Ad Adult Dermal Fibroblast Primary Cells | 4.54 |
| E025-H3K9ac-broadpeak | Roadmap | H3K9ac in Adipose-derived Mesenchymal Stem Cell cultured cells | 4.52 |
| E119-H3K36me3-broadpeak | ENCODE | H3K36me3 in HMEC Mammary Epithelial Primary Cells | 4.33 |
| ENCFF001TAQ (E124) | ENCODE | H3K36me3 in ChIP-seq on human monocytes CD14+ | 4.31 |
| E124-H3K9ac | ENCODE | H3K9ac in Monocytes-CD14+ RO01746 Primary Cells | 4.27 |
| E034-H3K27ac-broadpeak | Roadmap | H3K27ac in Primary T cells from peripheral blood | 4.21 |
| E047-H3K9ac-broadpeak | Roadmap | H3K9ac in Primary T CD8+ naive cells from peripheral blood | 4.16 |
| E042-H3K36me3-broadpeak | Roadmap | H3K36me3 in Primary T helper 17 cells PMA-I stimulated | 4.05 |
| E124-H4K20me1-broadpeak | ENCODE | H4K20me1 in Monocytes-CD14+ RO01746 Primary Cells | 4.01 |
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| ENCFF001TAS (E124) | ENCODE | H4K20me1 in ChIP-seq on human monocytes CD14+ | 7.86 |
| E029-H3K36me3-broadpeak | Roadmap | H3K36me3 in Primary monocytes from peripheral blood | 7.52 |
| E124-H4K20me1-broadpeak | ENCODE | H4K20me1 in Monocytes-CD14+ RO01746 Primary Cells | 7.31 |
| E037-H3K4me1-broadpeak | Roadmap | H3K4me1 in Primary T helper memory cells from peripheral blood 2 | 6.69 |
| E124-H3K79me2-broadpeak | ENCODE | H3K79me2 in Monocytes-CD14+ RO01746 Primary Cells | 6.66 |
| E030-H3K4me1 | Roadmap | H3K4me1 in Primary neutrophils from peripheral blood | 6.53 |
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| E030-H3K4me1-broadpeak | Roadmap | H3K4me1 in Primary neutrophils from peripheral blood | 6.37 |
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| E030-H3K36me3-broadpeak | Roadmap | H3K36me3 in Primary neutrophils from peripheral blood | 6.09 |
| E030-H3K4me3 | Roadmap | H3K4me3 in Primary neutrophils from peripheral blood | 6.03 |
| ENCFF001TAQ (E124) | ENCODE | H3K36me3 in ChIP-seq on human monocytes CD14+ | 5.97 |
| E040-H3K4me1-broadpeak | Roadmap | H3K4me1 in Primary T helper memory cells from peripheral blood 1 | 5.46 |
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| E124-H3K79me2 | ENCODE | H3K79me2 in Monocytes-CD14+ RO01746 Primary Cells | 5.24 |
| E046-H3K36me3-broadpeak | Roadmap | H3K36me3 in primary Natural Killer cells from peripheral blood | 5.12 |
| E029-H3K27ac | Roadmap | H3K27ac in Primary monocytes from peripheral blood | 5.12 |
| E124-H3K9ac | ENCODE | H3K9ac in Monocytes-CD14+ RO01746 Primary Cells | 4.83 |
| E043-H3K4me1-broadpeak | Roadmap | H3K4me1 in Primary T helper cells from peripheral blood | 4.78 |
| E034-H3K4me1-broadpeak | Roadmap | H3K4me1 in Primary T cells from peripheral blood | 4.76 |
| ENCFF001TAR (E124) | ENCODE | H3K79me2 in ChIP-seq on human monocytes CD14+ | 4.64 |
| E124-H3K27ac | ENCODE | H3K27ac in Monocytes-CD14+ RO01746 Primary Cells | 4.62 |
| E030-H3K36me3 | Roadmap | H3K36me3 in Primary neutrophils from peripheral blood | 4.57 |
| E031-H3K4me1-broadpeak | Roadmap | H3K4me1 in Primary B cells from cord blood | 4.44 |
| E050-H3K4me1 | Roadmap | H3K4me1 in Primary hematopoietic stem cells G-CSF-mobilized female | 4.42 |
| E029-H3K4me1-broadpeak | Roadmap | H3K4me1 in Primary monocytes from peripheral blood | 4.38 |
| E031-H3K4me1 | Roadmap | H3K4me1 in Primary B cells from cord blood | 4.35 |
| E124-H3K4me1 | ENCODE | H3K4me1 in Monocytes-CD14+ RO01746 Primary Cells | 4.26 |
| E029-H3K36me3 | Roadmap | H3K36me3 in Primary monocytes from peripheral blood | 4.24 |
AAA, abdominal aortic aneurysm; ENCODE, Encyclopedia of DNA Elements; Roadmap, NIH Roadmap Epigenomics Consortium.
Histone mark signatures for acute (early) or trained immunity stimulation in small and large AAA, respectively, are highlighted in bold.
FIGURE 1Regulatory networks and functional enrichment analysis of genes overexpressed in AAA dilated-PVAT related to immune cells and functions (A) Predicted histone modifications (green ovals) significantly associated with transcriptionally active euchromatin of myeloid or lymphoid immune cells (orange and blue octagons, respectively) in small AAA dilated-PVAT. The histone mark signature recalling immune response after acute stimulation is highlighted with an orange border. In this and panel C, edge thickness is proportional to the normalized enrichment score, which measures the relevance of enrichment (B) Regulatory network of histone marks and genes overexpressed in dilated-PVAT linked to acute stimulation in early-stage AAA (small AAA). Green hexagons represent histone marks associated with CD14+ monocytes, blue ovals show associated genes. Overexpressed genes associated with this histone mark signature are highlighted in dark blue (C) Predicted histone modifications significantly associated with myeloid or lymphoid immune cells in large AAA dilated-PVAT. The histone mark signature recalling trained immunity is outlined in orange (D) Regulatory network of histone marks and genes overexpressed in dilated-PVAT linked to trained immunity in advanced AAA (large AAA). Green hexagons are as in panel B, pink ovals show associated genes. Overexpressed genes associated with this histone signature are highlighted in dark pink (E) Functional enrichment of Gene Ontology (GO) biological processes and (F) transcription factors relative to overexpressed genes associated with acute stimulation or trained immunity. The ochre to brown color gradient indicates the significance level of the GO terms expressed as -log10 of the adjusted p-values; gray color indicates non-significant associations. Significant terms were hierarchically clustered based on the Kappa score.