| Literature DB >> 35681563 |
Renata Pavlič1, Marija Gjorgoska1, Tea Lanišnik Rižner1.
Abstract
Ovarian cancer (OC) is highly lethal and heterogeneous. Several hormones are involved in OC etiology including estrogens; however, their role in OC is not completely understood. Here, we performed targeted transcriptomics and estrogen metabolism analyses in high-grade serous OC (HGSOC), OVSAHO, Kuramochi, COV632, and immortalized normal ovarian epithelial HIO-80 cells. We compared these data with public transcriptome and proteome data for the HGSOC tissues. In all model systems, high steroid sulfatase expression and weak/undetected aromatase (CYP19A1) expression indicated the formation of estrogens from the precursor estrone-sulfate (E1-S). In OC cells, the metabolism of E1-S to estradiol was the highest in OVSAHO, followed by Kuramochi and COV362 cells, and decreased with increasing chemoresistance. In addition, higher HSD17B14 and CYP1A2 expressions were observed in highly chemoresistant COV362 cells and platinum-resistant tissues compared to those in HIO-80 cells and platinum-sensitive tissues. The HGSOC cell models differed in HSD17B10, CYP1B1, and NQO1 expression. Proteomic data also showed different levels of HSD17B10, CYP1B1, NQO1, and SULT1E1 between the four HGSOC subtypes. These results suggest that different HGSOC subtypes form different levels of estrogens and their metabolites and that the estrogen-biosynthesis-associated targets should be further studied for the development of personalized treatment.Entities:
Keywords: COV362; HIO-80; Kuramochi; OVSAHO; differentiated; high-grade serous ovarian carcinoma; immunoreactive; mesenchymal subtype; ovarian cancer; proliferative
Year: 2022 PMID: 35681563 PMCID: PMC9179372 DOI: 10.3390/cancers14112583
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.575
The assays and sequences of the primers and probes to evaluate the genes of interest.
| Gene | Gene Name | Assay | Assay ID or |
|---|---|---|---|
|
| Multidrug-resistance-associated protein 1 | SYBR Green | Forward primer: GGACTCAGGAGCACACGAAA |
| Reverse primer: ACGGCGATCCCTTGTGAAAT | |||
|
| ATP-binding cassette subfamily C member 11 | SYBR Green | Forward primer: TCTCCATATATCCTGTTAAT |
| Reverse primer: TATAGTTCTCCAGTCTCTTG | |||
|
| Multidrug-resistance-associated protein 4 | SYBR Green | Forward primer: AACTGCAACTTTCACGGATG |
| Reverse primer: AATGACTTTTCCCAGGCGTA | |||
|
| Broad substrate specificity ATP-binding cassette transporter ABCG2 | SYBR Green | Forward primer: GGGTTTGGAACTGTGGGTAG |
| Reverse primer: AGATGATTCTGACGCACACC | |||
|
| Aldo-keto reductase family 1, member C3 (17β-hydroxysteroid dehydrogenase type 5) | TaqMan | Forward primer: GTTGCCTATAGTGCTCTGGGATCT |
| Reverse primer: GGACTGGGTC CTCCAAGAGG | |||
| Fluorescent MGB-NFQ probe: CACCCATCGTTTGTCTC FAM | |||
|
| Catechol-O-methyltransferase | Taqman | Hs00241349_m1 |
|
| Cytochrome P450, family 19, subfamily A | Taqman | Hs00240671_m1 |
|
| Cytochrome P450, family 1, subfamily A, polypeptide 1 | Taqman | Hs00153120_m1 |
|
| Cytochrome P450, family 1, subfamily A, polypeptide 2 | Taqman | Hs00167927_m1 |
|
| Cytochrome P450, family 1, subfamily B, polypeptide 1 | Taqman | Hs00164383_m1 |
|
| Cytochrome P450, family 3, subfamily A, polypeptide 5 | Taqman | Hs00241417_m1 |
|
| Cytochrome P450, family 3, subfamily A, polypeptide 7 | Taqman | Hs00426361_m1 |
|
| Estrogen receptor 1 (α) | TaqMan | Hs00174860_m1 |
|
| Estrogen receptor 2 (β) | TaqMan | Hs00230957_m1 |
|
| G-protein–coupled estrogen receptor 1 (gene variant 2) | Taqman | Hs00173506_m1 |
| G-protein–coupled estrogen receptor 1 (gene variants 3 and 4) | Taqman | Hs01116133_m1 | |
|
| Glutathione S-transferase pi 1 | Taqman | Hs00168310_m1 |
|
| Hydroxysteroid (17β) dehydrogenase 1 | TaqMan | Hs00166219_g1 |
|
| Hydroxysteroid (17β) dehydrogenase 10 | TaqMan | Hs00189576_m1 |
|
| Hydroxysteroid (17β) dehydrogenase 12 | TaqMan | Hs00275054_m1 |
|
| Hydroxysteroid (17β) dehydrogenase 14 | Taqman | Hs00212233_m1 |
|
| Hydroxysteroid (17β) dehydrogenase 2 | TaqMan | Hs00157993_m1 |
|
| Hydroxysteroid (17β) dehydrogenase 4 | TaqMan | Hs00264973_m1 |
|
| Hydroxysteroid (17β) dehydrogenase 7 | Taqman | Hs00367686_m1 |
|
| Hydroxysteroid (17β) dehydrogenase 8 | TaqMan | Hs00367151_m1 |
|
| Hydroxy-delta-5-steroid dehydrogenase, 3β, and steroid delta-isomerase 1 | Taqman | Hs00426435 |
|
| Hydroxy-delta-5-steroid dehydrogenase, 3β, and steroid delta-isomerase 2 | Taqman | Hs00605123_m1 |
|
| NAD(P)H dehydrogenase, quinone 1 | Taqman | Hs00168547_m1 |
|
| NAD(P)H dehydrogenase, quinone 2 | Taqman | Hs00168552_m1 |
|
| DNA-directed RNA polymerase II subunit RPB1 | TaqMan and SYBR Green | Hs00172187_m1 (TaqMan) |
| Forward primer: CAAGTTCAACCAAGCCATTG (SYBR) | |||
| Reverse primer: GTGGCAGGTTCTCCAAGG (SYBR) | |||
|
| 60S acidic ribosomal protein P0 | TaqMan and SYBR Green | Hs99999902_m1 (TaqMan) |
| Forward primer: AATGTGGGCTCCAAGCAGAT (SYBR) | |||
| Reverse primer: TTCTTGCCCATCAGCACCAC (SYBR) | |||
|
| Solute carrier family 10 member 6 | SYBR Green | Forward primer: TATGACAACCTGTTCCACCG |
| Reverse primer: GAATGGTCAGGCACACAAGG | |||
|
| Solute carrier family 22 member 11 | SYBR Green | Forward primer: CTCACCTTCATCCTCCCCTG |
| Reverse primer: CCATTGTCCAGCATGTGTGT | |||
|
| Solute carrier family 22 member 7 | SYBR Green | Forward primer: CCTCCAGAGTCCAAGGGTCT |
| Reverse primer: ATGCTGCTCACCCACCAAAT | |||
|
| Solute carrier family 22 member 8 | SYBR Green | Forward primer: TACGCTGGTTGGTCTTGTCT |
| Reverse primer: CTCCCTCTTCCTTCTTGCCA | |||
|
| Solute carrier family 22 member 9 | SYBR Green | Forward primer: CGGCTACCTATCTGACCCCA |
| Reverse primer: TCTTGACGACTGTGCTTCCC | |||
|
| Organic solute transporter subunit alpha | SYBR Green | Forward primer: GCCCTTTCCAATACGCCTTC |
| Reverse primer: TCTGCTGGGTCATAGATGCC | |||
|
| Organic solute transporter subunit beta | SYBR Green | Forward primer: GTGCTGTCAGTTTTCCTTCCG |
| Reverse primer: TCATGTGTCTGGCTTAGGATGG | |||
|
| Solute carrier organic anion transporter family member 1A2 | SYBR Green | Forward primer: GTTGGCATCATTCTGTGCAAATGTT |
| Reverse primer: AACGAGTGTCAGTGGGAGTTATGAT | |||
|
| Solute carrier organic anion transporter family member 1B1 | SYBR Green | Forward primer: CAAATTCTCATGTTTTACTG |
| Reverse primer: GATTATTTCCATCATAGGTC | |||
|
| Solute carrier organic anion transporter family member 1B3 | SYBR Green | Forward primer: TCCAGTCATTGGCTTTGCAC |
| Reverse primer: TCCAACCCAACGAGAGTCCT | |||
|
| Solute carrier organic anion transporter family member 1C1 | SYBR Green | Forward primer: CACACAGACTACCAAACACCC |
| Reverse primer: TCACCATGCCGAACAGAGAA | |||
|
| Solute carrier organic anion transporter family member 2B1 | SYBR Green | Forward primer: AGAGCCCTGTGTTCCATTCT |
| Reverse primer: CTCTTGCTCCAGAAATGGCC | |||
|
| Solute carrier organic anion transporter family member 3A1 | SYBR Green | Forward primer: CTACGACAATGTGGTCTAC |
| Reverse primer: TTTTGATGTAGCGTTTATAG | |||
|
| Solute carrier organic anion transporter family member 4A1 | SYBR Green | Forward primer: ATGCACCAGTTGAAGGACAG |
| Reverse primer: AACAAGGTGGCAGCTTCTGAG | |||
|
| Sulfotransferase family 1A, member 1 | Taqman | Hs00738644_m1 |
|
| Sulfotransferase family 1E, estrogen-preferring, member 1 | Taqman | Hs00193690_m1 |
|
| Solute carrier organic anion transporter family member 4C1 | SYBR Green | Forward primer: CCAGGAGCCCCAGAAGTC |
| Reverse primer: AACTCGGACAGCGACAGTG | |||
|
| Steroid sulfatase (microsomal), isozyme S | TaqMan | Hs00165853_m1 |
|
| Sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone-preferring, member 1 | Taqman | Hs00234219_m1 |
|
| Sulfotransferase family, cytosolic, 2B, member 1 | Taqman | Hs00190268_m1 |
|
| UDP glucuronosyltransferase 2 family, polypeptide B7 | Taqman | Hs00426592_m1 |
* Reference genes.
Figure 1Gene expression of the (a) uptake transporters, (b) efflux transporters, (c) estrogen biosynthetic enzymes (with a schematic representation of local estrogen biosynthesis), (d) estrogen metabolic enzymes (with a schematic representation of estrogen metabolism), and (e) estrogen receptors in the HIO-80, OVSAHO, Kuramochi, and COV362 cell lines. (f) A heatmap with a dendrogram of the evaluated genes (excluding the weakly/not expressed genes CYP1A2, CYP3A5, CYP3A7, HSD3B1, HSD3B2, and SULT2A1) clustered based on Euclidean distance and Ward’s linkage. The expression of the genes of interest was evaluated in three individual experiments. Kruskal–Wallis with Dunn’s multiple comparison tests; *, p < 0.05. Data are presented as means ± SD. Normalized mRNA values for individual genes are shown in Supplementary Table S2.
Figure 2Pairwise comparison of the gene expression in the HIO-80, OVSAHO, Kuramochi, and COV362 cells, presented as volcano plots. FC, fold change; horizontal dashed line, the cutoff for experimental significance (dark orange; −log (1.3); p < 0.05); vertical dashed lines, the cutoff for genes similarly expressed in both cell lines (FC, ±2.0); vertical grey line (x = 0), genes not expressed in either cell line; red dots, differentially expressed genes; black dots, non-differentially expressed genes. Fold regulation and p values (Mann–Whitney U tests) of gene expression for individual cell pairs are presented in Supplementary Table S4.
Figure 3E1-S metabolism in HIO-80, OVSAHO, Kuramochi, and COV362 cells. Time courses for the estrogen metabolites E1-S, E1, E2, and E2-S following the addition of 2.3 nM E1-S (left), 8.5 nM E1-S (middle), or 85 nM E1-S (right) to the cells. Data are presented as means ± SD of two individual experiments. Several statistically significant differences (Mann–Whitney U test) in the gene expression are presented in Supplementary Table S5. Values on the graphs are presented in Supplementary Table S6.
Figure 4The expression of genes for (a) uptake transporters, (b) efflux transporters, (c) estrogen biosynthetic enzymes, (d) estrogen metabolic enzymes, and (e) estrogen receptors in the HGSOC tissues. (f) A heatmap with a dendrogram of all evaluated genes clustered based on the Euclidean distance and Ward’s linkage. The data from the Ovarian Serous Cystadenocarcinoma (TCGA, PanCancer Atlas) study were downloaded from cBioPortal on 10 January 2022. Data are presented as means ± SD (n = 300). Statistically significant differences (One-way ANOVA with Bonferroni correction) are shown in Supplementary Table S7.
Figure 5The expression of (a) HSD17B14 and (b) CYP1A2 in platinum-sensitive and platinum-resistant HGSOC tissues. Data from the Ovarian Serous Cystadenocarcinoma (TCGA, PanCancer Atlas) study were downloaded from cBioPortal on 10 January 2022. Data are presented as means ± SD (n (sensitive) = 105, n (resistant) = 43). Mann–Whitney U test; *, p < 0.05.
Figure 6The normalized protein levels in (a) HGSOC (study IDs PDC000114, PDC000113) [33], (left) and significant differences between individual proteins (right), (b) normal fallopian tube and HGSOC tissues (study ID PDC000110 [34], left) and significant differences between individual proteins in the HGSOC tissues (right), (c) different subtypes of HGSOC (study IDs PDC000114, PDC000113) [33]). All the data were downloaded from the NCI, PDC server on 12 January 2022 and are shown as mean ± SD. One-way ANOVA with Bonferroni correction (a,b) and Tukey’s tests (c); *, p < 0.05; **, p < 0.01; ***, p < 0.001; FC, fold change; bold, differences that are more important for interpretation; »>« denotes »levels are higher than«.