| Literature DB >> 35681154 |
Yufei Wang1, Tianyi Fang1, Yimin Wang1, Xin Yin1, Lei Zhang2, Xinghai Zhang2, Daoxu Zhang1, Yao Zhang1, Xibo Wang1, Hao Wang1, Yingwei Xue3.
Abstract
BACKGROUND: The prognosis of Borrmann type III advanced gastric cancer (AGC) is known to vary significantly among patients. This study aimed to determine which differentially expressed genes (DEGs) are directly related to the survival time of Borrmann type III AGC patients and to construct a prognostic model.Entities:
Keywords: AADAC; Borrmann type III; Gastric cancer; Prognosis
Mesh:
Substances:
Year: 2022 PMID: 35681154 PMCID: PMC9178847 DOI: 10.1186/s12885-022-09594-1
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.638
Fig. 1The results of mRNA sequencing. a Differentially expressed mRNAs in the A group (OS<1 year) and B group (OS>3 years) by mRNA sequencing. AADAC is shown in red bold font on the right. b The expression of AADAC in tumor tissues of group A and group B. c The expression of AADAC in tumor and normal tissues of all patients. d The expression of AADAC in tumor and normal tissues of group A. e The expression of AADAC in tumor and normal tissues of group B. (*P<0.05; **P<0.001.)
Fig. 2Bioinformatics of AADAC. a The expression of AADAC in the GSE15459 dataset. b The expression of AADAC based on sex in the GSE15459 dataset. c The expression of AADAC based on ages in the GSE15459 dataset. d The expression of AADAC based on subtypes in the GSE15459 dataset. e The expression of AADAC based on Lauren classification in the GSE15459 dataset. f The expression of AADAC based on pTNM in the GSE15459 dataset. (*P<0.05; **P<0.001.)
AADAC-related genes in TCGA-STAD and GSE15459 (partial list)
| TCGA-STAD | GSE15459 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Positive correlation | Negative correlation | Positive correlation | Negative correlation | ||||||||
| Gene | Gene | R value | Gene | R value | Gene | R value | |||||
| ATP13A4 | 0.524 | 1.31e-26 | RAD23B | -0.318 | 2.34e-9 | GSTA1 | 0.685 | 6.16e-24 | KCTD20 | -0.488 | 6.07e-11 |
| CYP2C18 | 0.518 | 5.43e-26 | SLC7A5 | -0.318 | 2.39e-9 | CTSE | 0.675 | 4.19e-23 | EHBP1 | -0.464 | 7.40e-10 |
| AADACP1 | 0.511 | 3.14e-25 | PHF19 | -0.297 | 3.82e-8 | CYP2C18 | 0.674 | 4.46e-23 | CAMSAP1 | -0.451 | 2.84e-9 |
| ARL14 | 0.497 | 1.19e-23 | RFC2 | -0.295 | 4.86e-8 | AKR1B10 | 0.665 | 2.58e-22 | CBX1 | -0.445 | 5.10e-9 |
| KALRN | 0.496 | 1.25e-23 | CIZ1 | -0.290 | 9.04e-8 | ADH1C | 0.657 | 1.35e-21 | CDYL | -0.435 | 1.32e-8 |
| AKR1B10 | 0.492 | 3.28e-23 | SET | -0.290 | 9.12e-8 | TFF1 | 0.657 | 1.18e-21 | RBFOX2 | -0.430 | 1.97e-8 |
| SMIM24 | 0.489 | 6.80e-23 | HMGB3 | -0.289 | 1.03e-7 | SLC9A2 | 0.650 | 4.22e-21 | PENK | -0.425 | 3.08e-8 |
| PDZD3 | 0.486 | 1.17e-22 | CEL | -0.287 | 1.20e-7 | CYP2C9 | 0.645 | 1.22e-20 | SNAP47 | -0.424 | 3.45e-8 |
| CTSE | 0.482 | 3.31e-22 | MZT1 | -0.287 | 1.27e-7 | BCL2L14 | 0.644 | 1.35e-20 | MMD | -0.419 | 5.44e-8 |
| CYP2C19 | 0.478 | 7.58e-22 | CDCA4 | -0.283 | 1.92e-7 | VSIG1 | 0.641 | 2.21e-20 | BOLA3-AS1 | -0.415 | 7.69e-8 |
Statistically significant P values are in bold (P<0.05)
Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of AADAC-related genes in patients with gastric cancer (partial list)
| Glycerophospholipid metabolism | ACHE, AGPAT9, CDS1, CHPT1, ETNK1 | Chemical carcinogenesis | ADH1A, AKR1C2, CBR1, CYP2C18, GSTA1 | ||
| Fatty acid degradation | ACADL, ACOX1, ADH1A, CPT2, CYP4A11 | Retinol metabolism | CYP3A5, DGAT1, DHRS3, RDH12, RETSAT | ||
| Fat digestion and absorption | ABCG5, APOA1, CD36, DGAT2, FABP1 | Metabolism of xenobiotics by cytochrome P450 | CYP2C9, GSTA1, MGST2, UGT1A6 | ||
| Tyrosine metabolism | ADH1A, COMT, DDC, HGD, TYRP1 | Tight junction | CTTN, EPB41, F11R, LLGL2, MAGI1 | ||
| Phenylalanine metabolism | ALDH3A1, DDC, , HPD, MAOA, MAOB | Peroxisome | ACSL3, CROT, DECR2, EHHADH, FAR1 | ||
Statistically significant P values are in bold (P<0.05)
Gene Ontology (GO) analysis of AADAC-related genes in patients with gastric cancer (partial list)
| TCGA-STAD | GSE15459 | |||||||
|---|---|---|---|---|---|---|---|---|
| GO path number | Biological process | Gene number | GO path number | Biological process | Gene number | |||
| 44255 | Cellular lipid metabolic process | 271 | <0.001 | 6805 | Xenobiotic metabolic process | 42 | <0.001 | |
| 12505 | Endomembrane system | 808 | <0.001 | 98609 | Cell-Cell adhesion | 182 | <0.001 | |
| 16477 | Cell migration | 259 | <0.001 | 44242 | Endomembrane system | 638 | <0.001 | |
| 7010 | Cytoskeleton organization | 244 | <0.001 | 30277 | Maintenance of gastrointestinal epithelium | 11 | <0.001 | |
| 42127 | Regulation of cell proliferation | 294 | <0.001 | 4745 | Retinol dehydrogenase activity | 10 | <0.001 | |
Statistically significant P values are in bold (P<0.05)
Fig. 3The role of AADAC in gastric cancer. a-b Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses in the HMU-GC cohort. c-f Gene Ontology (GO) pathway enrichment analyses in the HMU-GC cohort. g The interaction network of the AADAC-correlated genes in GC (STRING)
Fig. 4Expression of AADAC. a The mRNA expression of AADAC in 6 cell lines. b The protein expression of AADAC in 6 cell lines. c Amounts of AADAC protein determined by densitometry of protein bands. GAPDH was the loading control. d-e Immunohistochemical (IHC) staining of high expression of AADAC in Borrmann type III AGC. f-g Image processed by Image-Pro Plus version software. h-i IHC staining of low expression of AADAC in Borrmann type III AGC. Western blot (WB) images had been croppedand and the full length original blots were included in the Supplementary file 4
Fig. 5Kaplan–Meier curves of overall survival. a AADAC expression in all patients. b AADAC expression in patients with stage I-II disease. c AADAC expression in patients with stage III disease. d AADAC expression in patients aged ≤60 years. e AADAC expression in patients aged >60 years
Chi-square test analysis of the connection between AADAC expression and clinicopathological features
| Sex | 0.874 | ||
| Male | 65 (73.9) | 48 (75.0) | |
| Female | 23 (26.1) | 16 (25.0) | |
| Age (years) | |||
| ≤60 | 39 (44.3) | 40 (62.5) | |
| >60 | 49 (55.7) | 24 (37.5) | |
| BMI (kg/m2) | 0.787 | ||
| ≤24 | 69 (78.4) | 49 (76.6) | |
| >24 | 19 (21.6) | 15 (23.4) | |
| Tumor diameter (mm) | 0.809 | ||
| ≤50 | 45 (51.1) | 34 (53.1) | |
| >50 | 43 (48.9) | 30 (46.9) | |
| CEA | 0.499 | ||
| ≤5ng/ml | 72 (81.8) | 55 (85.9) | |
| >5ng/ml | 16 (18.2) | 9 (14.1) | |
| CA19-9 | 0.885 | ||
| ≤37U/ml | 75 (85.2) | 54 (84.4) | |
| >37U/ml | 13 (14.8) | 10 (15.6) | |
| Tumor location | 0.415 | ||
| Middle and Upper third | 22 (25.0) | 21 (32.8) | |
| Lower third | 65 (73.9) | 43 (67.2) | |
| Entire stomach | 1 (1.1) | 0 (0) | |
| Histological type | 0.583 | ||
| Well to moderately differentialed | 17 (19.3) | 12 (18.8) | |
| Poor differentialed | 36 (40.9) | 31 (48.4) | |
| Signet ring cell | 9 (10.2) | 3 (4.7) | |
| Mucinous | 26 (29.6) | 18 (28.1) | |
| pTNM stage | 0.813 | ||
| I | 6 (6.8) | 5 (7.8) | |
| II | 32 (36.4) | 26 (40.6) | |
| III | 50 (56.8) | 33 (51.6) | |
| Vascular infiltration | 0.405 | ||
| Yes | 26 (29.5) | 23 (35.9) | |
| No | 62 (70.5) | 41 (64.1) | |
| Nerve infiltration | 0.288 | ||
| Yes | 42 (47.7) | 25 (39.1) | |
| No | 46 (52.3) | 39 (60.9) | |
| Postoperative chemotherapy | |||
| Yes | 28 (31.8) | 31 (48.4) | |
| No | 60 (68.2) | 33 ( 51.6) | |
| HER2 expression | 0.403 | ||
| Negative or IHC 1+ | 68 (77.9) | 53 (82.8) | |
| IHC 2+ or IHC 3+ | 20 (22.1) | 11 (17.2) |
BMI body mass index, CEA carcinoembryonic antigen, CA19-9 carbohydrate antigen 19-9, IHC immunohistochemical
CEA and CA19-9 were according to the tumor marker examination. Tumor location, histological type, pTNM stage, vascular infiltration ,nerve infiltration and HER2 expression were according to the postoperative pathology report. Statistically significant P values are in bold (P<0.05)
Univariate and multivariate analyses of overall survival
| Sex | ||||
| Male | 1[reference] | |||
| Female | 0.823 (0.462-1.465) | 0.507 | ||
| Age (years) | 1.020 (0.993-1.049) | 0.147 | - | - |
| BMI | 0.956 (0.871-1.048) | 0.336 | - | - |
| CEA (ng/ml) | 1.009 (1.000-1.017) | 1.005 (0.996-1.014) | 0.287 | |
| CA19-9 (U/ml) | 1.003 (1.001-1.004) | 1.002 (1.001-1.004) | ||
| Tumor location | ||||
| Middle and Upper third | 1[reference] | |||
| Lower third | 1.033 (0.599-1.782) | 0.907 | ||
| Entire stomach | 3.732 (0.492-28.304) | 0.203 | ||
| Histological type | ||||
| Well to moderately differentialed | 1[reference] | 1[reference] | ||
| Poor differentialed | 1.441 (0.675-3.077) | 0.345 | 1.282 (0.579-2.834) | 0.540 |
| Signet ring cell | 1.014 (0.312-3.294) | 0.981 | 0.547 (0.164-1.829) | 0.327 |
| Mucinous | 2.473 (1.157-5.284) | 2.005 (0.917-4.383) | 0.081 | |
| Tumor size (mm) | 1.006 (0.995-1.018) | 0.295 | - | - |
| pTNM stage | ||||
| I-II | 1[reference] | 1[reference] | ||
| III | 5.964 (3.108-11.445) | 4.388 (2.029-9.488) | ||
| AADAC | ||||
| Low expression | 1[reference] | 1[reference] | ||
| High expression | 0.427 (0.248-0.737) | 0.413 (0.235-0.727) | ||
| mLNR | 28.014 (10.216-76.816) | 2.774 (0.554-13.895) | 0.215 | |
| Vascular infiltration | ||||
| No | 1[reference] | 1[reference] | ||
| Yes | 1.673 (1.021-2.742) | 1.083 (0.617-1.899) | 0.782 | |
| Nerve infiltration | ||||
| No | 1[reference] | |||
| Yes | 1.412 (0.860-2.320) | 0.173 | ||
| Postoperative chemotherapy | ||||
| Yes | 1[reference] | |||
| No | 1.082 (0.656-1.784) | 0.757 | ||
HR hazard ratio, CI confidence interval, BMI body mass index, CEA carcinoembryonic antigen, CA19-9 carbohydrate antigen19-9, mLNR metastatic lymph node ratio
CEA and CA19-9 were according to the tumor marker examination. Tumor location, pTNM stage, histological type, mLNR, vascular infiltration and nerve infiltration were according to the postoperative pathology report. Statistically significant P values are in bold (P<0.05)
Fig. 6Nomogram models predicting the overall survival and disease-free survival of patients. a Nomogram model predicting the 3- and 5-year overall survival of patients with Borrmann type III AGC. b ROC curve of the nomogram model predicting the 3-year overall survival of patients. c ROC curve of the nomogram model predicting the 5-year overall survival of patients. ROC: receiver operating characteristic, CA19-9: carbohydrate antigen 19-9
Univariate and multivariate analyses of disease-free survival
| Characteristics | Univariate analysis | Multivariate analysis | ||
|---|---|---|---|---|
| HR (95% CI) | HR (95% CI) | |||
| Sex | ||||
| Male | 1[reference] | |||
| Female | 0.878 (0.509-1.517) | 0.642 | ||
| Age (years) | 1.017 (0.991-1.044) | 0.211 | - | - |
| BMI | 0.978 (0.895-1.068) | 0.620 | - | - |
| CEA (ng/ml) | 1.008 (1.000-1.017) | 0.051 | - | - |
| CA19-9 (U/ml) | 1.002 (1.001-1.004) | 1.002 (1.001-1.003) | ||
| Tumor location | ||||
| Middle and Upper third | 1[reference] | |||
| Lower third | 0.923 (0.553-1.542) | 0.759 | ||
| Entire stomach | 3.050 (0.406-22.919) | 0.279 | ||
| Histological type | ||||
| Well to moderately differentialed | 1[reference] | 1[reference] | ||
| Poor differentialed | 1.494 (0.703-3.178) | 0.297 | 1.345 (0.619-2.922) | 0.453 |
| Signet ring cell | 1.020 (0.314-3.312) | 0.974 | 0.556 (0.168-1.835) | 0.335 |
| Mucinous | 2.974 (1.410-6.272) | 2.508 (1.167-5.389) | ||
| Tumor size (mm) | 1.008 (0.997-1.019) | 0.163 | - | - |
| pTNM stage | ||||
| I-II | 1[reference] | 1[reference] | ||
| III | 5.453 (2.973-10.001) | 4.151 (2.011-8.570) | ||
| AADAC | ||||
| Low expression | 1[reference] | 1[reference] | ||
| High expression | 0.469 (0.281-0.783) | 0.432 (0.255-0.731) | ||
| mLNR | 30.128 (11.074-81.966) | 3.113 (0.680-14.238) | 0.143 | |
| Vascular infiltration | ||||
| No | 1[reference] | |||
| Yes | 1.598 (0.990-2.581) | 0.055 | ||
| Nerve infiltration | ||||
| No | 1[reference] | |||
| Yes | 1.286 (0.801-2.065) | 0.299 | ||
| Postoperative chemotherapy | ||||
| Yes | 1[reference] | 0.990 | ||
| No | 0.997 (0.618-1.609) | |||
HR hazard ratio, CI confidence interval, BMI body mass index, CEA carcinoembryonic antigen, CA19-9 carbohydrate antigen19-9, mLNR metastatic lymph node ratio
CEA and CA19-9 were according to the tumor marker examination. Tumor location, pTNM stage, histological type, mLNR, vascular infiltration and nerve infiltration were according to the postoperative pathology report. Statistically significant P values are in bold (P<0.05)
Fig. 7a Nomogram models predicting the disease free survival of patients a Nomogram model predicting the 3- and 5-year disease-free survival of patients with Borrmann type III AGC. b ROC curve of the nomogram model predicting the 3-year disease-free survival of patients. c ROC curve of the nomogram model predicting the 5-year disease-free survival of patients. ROC: receiver operating characteristic, CA19-9: carbohydrate antigen 19-9