| Literature DB >> 35677638 |
Chao Liu1, Ga-Li Bai1, Ping Liu2, Lin Wang2.
Abstract
Objective: For studying the association of EPO (rs551238), EPO (rs1617640), and TCF7L2 (rs7903146) gene with diabetic retinopathy in Northern Chinese population.Entities:
Mesh:
Substances:
Year: 2022 PMID: 35677638 PMCID: PMC9168213 DOI: 10.1155/2022/6900660
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.464
Primers used for LDR analysis of the EPO and TCF7L genes.
| Rs number | Primers | Amplification bands |
|---|---|---|
| rs551238 | CCAGGGTTGGCAGCTGTTACC | 227 bp |
| TCTCACACAGCCTGTCTGACC | ||
|
| ||
| rs1617640 | AGCTAGGCTGCATTGCTGAGT | 219 bp |
| CACCCATTTGACAGATGAGGA | ||
|
| ||
| rs7903146 | TGCCTCAAAACCTAGCACAGCT | 229 bp |
| GTAGCAGTGAAGTGCCCAAGC | ||
Probe sequences of the EPO and TCF7L genes.
| Rs number | Probe sequences |
|---|---|
| rs551238 | CACCTTATTGACCAGCGTAGGCAGA-FAM- |
| rs1617640 | GAGTGAGATTCCCAGAGCAGGAGACTTT-FAM- |
| rs7903146 | TATATAATTTAATTGCCGTATGAGGCACTTT-FAM- |
Figure 1Ethidium bromide stained 1% agarose gel of products from PCR reactions using rs551238 primers, rs1617640 primers, and rs7903146 primers. Lanes 1 to 3: products from reactions with primers for rs551238, rs1617640, and rs7903146. Lane 4: molecular size standards.
Frequences of genotypes and alleles of EPO and TCF7L genes polymorphisms in diabetes retinopathy patients and normal controls.
|
|
|
|
|
| |
|---|---|---|---|---|---|
| Allele | ( | ( | |||
| AA | (71.88%) 230 | (56.60%) 133 | ≤0.001 | 1.960 (1.374-2.795) | |
| AC | (25.63%) 82 | (40.00%) 94 | ≤0.001 | 0.517 (0.360-0.742) | |
|
| |||||
| rs551238 | CC | (2.50%) 8 | (3.40%) 8 | 0.529 | 0.728 (0.269-1.967) |
| A | (97.50%) 312 | (96.60%) 227 | 0.001 | 1.690 (1.248-2.288) | |
| C | (28.13.3%) 90 | (47.66%) 112 | 0.001 | 0.592 (0.437-0.801) | |
| GG | (1.88%) 6 | (2.98%) 7 | 0.396 | 0.622 (0.206-1.877) | |
| GT | (26.89%) 86 | (36.17%) 85 | 0.019 | 0.649 (0.451-0.933) | |
|
| |||||
| rs1617640 | TT | (71.25%) 228 | (60.85%) 143 | 0.01 | 1.594 (1.116-2.278) |
| G | (28.75.3%) 92 | (39.15%) 92 | 0.013 | 0.678 (0.498-0.923) | |
| T | (98.13%) 314 | (97.02%) 228 | 0.013 | 1.476 (1.084-2.010) | |
| CC | (87.19%) 279 | (94.89%) 223 | 0.002 | 0.366 (0.188-0.713) | |
| CT | (12.81%) 41 | (5.11%) 12 | 0.002 | 2.731 (1.402-5.320) | |
|
| |||||
| rs7903146 | TT | (0.00) 0 | (0.00) 0 | ||
| C | (100.00%) 320 | (100.00%) 235 | 0.003 | 0.383 (0.199-0.737) | |
| T | (12.81%) 41 | (5.11%) 12 | 0.003 | 2.612 (1.357-5.028) | |
OR: odds ratio.
Frequences of genotypes and alleles of EPO and TCF7L genes polymorphisms in diabetes retinopathy patients and diabetes mellitus patients.
|
|
|
|
|
|
|
|---|---|---|---|---|---|
| Allele | ( | ( | |||
| AA | (71.88%) 230 | (63.20%) 79 | 0.074 | 1.488 (0.961-2.305) | |
| AC | (25.62%) 82 | (30.40%) 38 | 0.308 | 0.789 (0.500-1.245) | |
|
| |||||
| rs551238 | CC | (2.50%) 8 | (6.40%) 8 | 0.047 | 0.375 (0.138-1.022) |
| A | (97.50%) 312 | (78.4%) 196 | 0.025 | 1.524 (1.052-2.206) | |
| C | (29.13%) 90 | (36.80%) 46 | 0.025 | 0.656 (0.453-0.950) | |
| GG | (1.88%) 6 | (3.20%) 4 | 0.397 | 0.578 (0.160-2.084) | |
| GT | (26.88%) 86 | (29.60%) 37 | 0.563 | 0.874 (0.554-1.380) | |
|
| |||||
| rs1617640 | TT | (71.25%) 228 | (67.20%) 84 | 0.402 | 1.210 (0.775-1.888) |
| G | (28.75%) 92 | (32.80%) 41 | 0.326 | 0.824 (0.559-1.214) | |
| T | (98.13%) 314 | (96.80%) 121 | 0.326 | 1.214 (0.824-1.789) | |
| CC | (87.19%) 279 | (96.00%) 120 | 0.006 | 0.284 (0.109-0.735) | |
| CT | (12.81%) 41 | (4.00%) 5 | 0.006 | 3.527 (1.360-9.145) | |
|
| |||||
| rs7903146 | TT | (0) 0 | (0) 0 | ||
| C | (100.00%) 320 | (100.00%) 120 | 0.008 | 0.298 (0.116-0.763) | |
| T | (12.81%) 41 | (4.00%) 5 | 0.008 | 3.354 (1.310-8.588) | |
OR: odds ratio.
Frequences of genotypes and alleles of EPO and TCF7L genes polymorphisms in normal controls and diabetes mellitus patients.
|
|
|
|
|
|
|
|---|---|---|---|---|---|
| Allele | ( | ( | |||
| AA | (56.60%) 133 | (63.20%) 79 | 0.225 | 0.759 (0.486-1.186) | |
| AC | (40.00%) 94 | (30.40%) 38 | 0.072 | 1.526 (0.962-2.422) | |
|
| |||||
| rs551238 | CC | (3.4%) 8 | (6.40%) 8 | 0.189 | 0.515 (0.189-1.408) |
| A | (95.60%) 227 | (93.60%) 117 | 0.583 | 0.902 (0.623-1.304) | |
| C | (47.66.4%) 112 | (36.80%) 46 | 0.583 | 1.109 (0.767-1.604) | |
| GG | (2.98%) 7 | (3.20%) 4 | 0.908 | 0.929 (0.627-3.235) | |
| GT | (36.17%) 85 | (29.60%) 37 | 0.148 | 1.409 (0.885-2.244) | |
|
| |||||
| rs1617640 | TT | (60.85%) 143 | (67.20%) 84 | 0.235 | 0.759 (0.481-1.197) |
| G | (39.15%) 92 | (32.80%) 41 | 0.328 | 1.216 (0.822-1.798) | |
| T | (97.02%) 228 | (96.80%) 121 | 0.328 | 0.823 (0.556-1.217) | |
| CC | (94.89%) 223 | (96.00%) 120 | 0.638 | 0.774 (0.266-2.250) | |
| CT | (5.11%) 12 | (4.00%) 5 | 0.638 | 1.291 (0.444-3.725) | |
|
| |||||
| rs7903146 | TT | (0) 0 | (0) 0 | ||
| C | (100.00%) 235 | (100.00%) 125 | 0.642 | 0.779 (0.271-2.236) | |
| T | (5.11%) 12 | (4.00%) 5 | 0.642 | 1.284 (0.447-3.686) | |