Literature DB >> 3567155

Local structural features around the C-terminal segment of Streptomyces subtilisin inhibitor studied by carbonyl carbon nuclear magnetic resonances three phenylalanyl residues.

M Kainosho, H Nagao, T Tsuji.   

Abstract

The carbonyl carbon NMR signals of the Phe residues in Streptomyces subtilisin inhibitor (SSI) were selectively observed for [F]SSI, in which all phenylalanines were uniformly labeled with [1-13C]Phe. The three enhanced resonances in the spectrum of [F]SSI were unambiguously assigned to the specific sites in the amino acid sequence by means of 15N,13C double-labeling techniques. Namely, the resonances at 174.9 and 172.6 ppm (in D2O, pH 7.3, 50 degrees C) showed the satellite peaks due to 13C-15N spin coupling in the spectra of [F,GS]SSI and [F,A]SSI, in which Ser/Gly and Ala residues were labeled with [15N]Gly/Ser and [15N]Ala, respectively, together with [1-13C]Phe. The carbonyl groups of Phe-97 and Phe-111 are involved in peptide bonds with the amino nitrogens of Ser-98 and Ala-112, respectively. These results clearly indicate that the signals at 174.5 and 172.6 ppm are due to Phe-97 and Phe-111, respectively. The signal at the lowest field (177.1 ppm) was thus assigned to the carboxyl carbon of the C-terminal Phe-113. The lifetimes of the amide hydrogens of the three Phe residues and their C-terminal-side neighbors (Ser-98 and Ala-112) were investigated by using the effect of deuterium-hydrogen exchange of amide on the line shapes (DEALS) for the Phe carbonyl carbon resonances. In this method, the NMR spectra of [F]SSI dissolved in 50% D2O (pH 7.3) were measured at various temperatures, and the line shape changes caused by deuteriation isotope shifts were analyzed.(ABSTRACT TRUNCATED AT 250 WORDS)

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Year:  1987        PMID: 3567155     DOI: 10.1021/bi00378a013

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

1.  Measurement of the exchange rates of rapidly exchanging amide protons: application to the study of calmodulin and its complex with a myosin light chain kinase fragment.

Authors:  S Spera; M Ikura; A Bax
Journal:  J Biomol NMR       Date:  1991-07       Impact factor: 2.835

2.  Editing of multidimensional NMR spectra of partially deuterated proteins. Measurement of amide deuterium isotope effects on the chemical shifts of protein backbone nuclei.

Authors:  A Meissner; J Briand; O W Sφrensen
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

3.  Carbon-13 NMR method for the detection of correlated hydrogen exchange at adjacent backbone peptide amides and its application to hydrogen exchange in five antiparallel beta strands within the hydrophobic core of Streptomyces subtilisin inhibitor (SSI).

Authors:  Kenichi Uchida; John L Markley; Masatsune Kainosho
Journal:  Biochemistry       Date:  2005-09-06       Impact factor: 3.162

4.  1H, 15N and 13C resonance assignments and secondary structure determination of the RNA-binding domain of E.coli rho protein.

Authors:  D M Briercheck; T J Allison; J P Richardson; J F Ellena; T C Wood; G S Rule
Journal:  J Biomol NMR       Date:  1996-12       Impact factor: 2.835

5.  Reductive cleavage and regeneration of the disulfide bonds in Streptomyces subtilisin inhibitor (SSI) as studied by the carbonyl 13C NMR resonances of cysteinyl residues.

Authors:  K Uchida; Y Miyake; M Kainosho
Journal:  J Biomol NMR       Date:  1991-05       Impact factor: 2.835

6.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

7.  Accurate measurements of the effects of deuteration at backbone amide positions on the chemical shifts of ¹⁵N, ¹³Cα, ¹³Cβ, ¹³CO and ¹Hα nuclei in proteins.

Authors:  Daoning Zhang; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2013-04-24       Impact factor: 2.835

8.  Dual amino acid-selective and site-directed stable-isotope labeling of the human c-Ha-Ras protein by cell-free synthesis.

Authors:  T Yabuki; T Kigawa; N Dohmae; K Takio; T Terada; Y Ito; E D Laue; J A Cooper; M Kainosho; S Yokoyama
Journal:  J Biomol NMR       Date:  1998-04       Impact factor: 2.835

9.  A NMR experiment for simultaneous correlations of valine and leucine/isoleucine methyls with carbonyl chemical shifts in proteins.

Authors:  Vitali Tugarinov; Vincenzo Venditti; G Marius Clore
Journal:  J Biomol NMR       Date:  2013-12-18       Impact factor: 2.835

  9 in total

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