| Literature DB >> 35671043 |
Natsuka Kimura1, Hidenori Takahashi2, Shinichi Sakamoto2, Yasuo Yanagi3,4, Nozomi Maeshima5, Ayaka Minamimoto5, Noriko Iwamoto6, Takashi Shimada6, Ryozo Nagai7, Kenichi Aizawa1,8.
Abstract
Purpose: To develop a microvolume analytical method for measurement of the aflibercept concentration in human intraocular fluid and plasma.Entities:
Mesh:
Substances:
Year: 2022 PMID: 35671043 PMCID: PMC9187940 DOI: 10.1167/tvst.11.6.7
Source DB: PubMed Journal: Transl Vis Sci Technol ISSN: 2164-2591 Impact factor: 3.048
Figure 2.Aflibercept structure. Aflibercept possesses a dimeric structure, including a core hinge, DKTHTCPPCPAPELLGG, with two disulfide bridges. Yellow and blue represent the VGFR1 and VGFR2 regions, respectively. Gray represents the immunoglobulin Fc domain. Four intra-chain disulfide bridges (30–79, 124–185, 246–306, and 352–410) and two inter-chain disulfides (211 and 214) are highlighted in pink and green, respectively. Potential glycosylation sites are represented in gray. Underlined sequences were selected as signature peptides of aflibercept. VEGFR, vascular endothelial growth factor receptor.
Signature Peptide Sequences and MRM Transitions for Aflibercept
| Peptide Sequence | Position | MRM Transition | Purpose |
|---|---|---|---|
| 1. IIWDSR | aa.56–61 (VGFR1) | 395.30>563.25 395.30>262.15 395.30>227.20 | Quantitation Structure Structure |
| 2. GFIISNATYK | aa.63–72 (VGFR1) | 557.40>909.50 557.40>796.40 557.40>683.35 | Structure |
| 3. QTNTIIDVVLSPSHGIELSVGEK | aa.97–119 (VGFR1–2) | 812.85>940.00 812.85>883.65 812.85>776.50 | Structure |
| 4. FLSTLTIDGVTR | aa.166–177 (VGFR2) | 661.85>1062.60 661.95>761.40 661.95>432.25 | Structure |
| 5. P14R | — | 512.10>292.30 512.10>389.30 512.10>660.40 | Internal standard |
Figure 1.nSMOL workflow for aflibercept analysis. Aflibercept (blue) and endogenous IgGs (purple and red to show diversity) were collected from pores of Protein A resin preceding site-selective tryptic proteolysis by the nSMOL reaction, as immobilized trypsin enzyme has limited access to the substrate in the reaction solution due to physicochemical size differences between the two resins. Peptide fragments derived from fused domain and Fab do not require further purification and can be directly analyzed by LCMS.
Figure 3.Representative MRM chromatogram of the signature aflibercept peptide IIWDSR. (a) Structure assignment of fragment ions from the peptide IIWDSR. The highest transition of m/z 395.30 to 563.25 (y4+) was selected for quantitative analysis. Representative chromatogram of transition m/z 395.30 to 563.25 for aflibercept using (b) blank sample and (c) LLOQ (0.195 µg/mL). The peak at 3.85 minutes (indicated with an arrow) shows the response of the signature peptide transition.
Accuracy and Precision of Quantifying the Aflibercept Peptide IIWDSR Using the nSMOL Method
| Set Concentration (µg/mL) | |||
|---|---|---|---|
| 0.195 | 1.00 | 15.0 | |
| Run 1 | |||
| Calculated concentration (µg/mL) | 0.198 | 0.901 | 14.9 |
| 0.176 | 0.939 | 14.6 | |
| 0.188 | 0.857 | 14.9 | |
| 0.169 | 0.998 | 14.3 | |
| 0.166 | 0.951 | 14.9 | |
| Average (µg/mL) | 0.179 | 0.929 | 14.7 |
| Accuracy (%) | 91.9 | 92.9 | 98.0 |
| Precision (%) | 7.49 | 5.72 | 1.83 |
| Run 2 | |||
| Calculated concentration (µg/mL) | 0.201 | 0.984 | 15.3 |
| 0.193 | 1.10 | 15.4 | |
| 0.190 | 1.05 | 15.0 | |
| 0.182 | 1.07 | 15.9 | |
| 0.179 | 1.02 | 16.1 | |
| Average (µg/mL) | 0.189 | 1.05 | 15.5 |
| Accuracy (%) | 96.8 | 105 | 104 |
| Precision (%) | 4.66 | 4.26 | 2.91 |
| Run 3 | |||
| Calculated concentration (µg/mL) | 0.174 | 0.998 | 14.8 |
| 0.207 | 0.994 | 14.6 | |
| 0.188 | 1.02 | 14.6 | |
| 0.185 | 1.03 | 14.3 | |
| 0.182 | 1.01 | 14.5 | |
| Average (µg/mL) | 0.187 | 1.01 | 14.6 |
| Accuracy (%) | 95.8 | 101 | 97.1 |
| Precision (%) | 6.54 | 1.48 | 1.24 |
| Averaged accuracy (%) | 94.8 | 99.5 | 99.6 |
| Averaged precision (%) | 6.23 | 3.82 | 1.99 |
Evaluation of Leakage Following an Injection of 2 mg of Aflibercept in 50 µL Using a 30 G Needle
| Concentration (µg/mL) | Concentration From the Original (%) | Sample Amount (µL) | Aflibercept (ng) | Ratio of Leaked Aflibercept (%) |
|---|---|---|---|---|
| 13.4 | 0.0335 | 4 | 53.6 | 0.00268 |
| 24.7 | 0.06175 | 4 | 98.8 | 0.00494 |
| 52.2 | 0.1305 | 1 | 52.2 | 0.00261 |
| 68.7 | 0.17175 | 2 | 137.4 | 0.00687 |
| 85.8 | 0.2145 | 3 | 257.4 | 0.01287 |
| 90.3 | 0.22575 | 4 | 361.2 | 0.01806 |
| 117 | 0.2925 | 6 | 702 | 0.0351 |
| 149 | 0.3725 | 18 | 2682 | 0.1341 |
| 214 | 0.535 | 6 | 1284 | 0.0642 |
| 261 | 0.6525 | 6 | 1566 | 0.0783 |
| 342 | 0.855 | 4 | 1368 | 0.0684 |
| 755 | 1.8875 | 3 | 2265 | 0.11325 |
| 1174 | 2.935 | 1 | 1174 | 0.0587 |
| 1637 | 4.0925 | 12 | 19644 | 0.9822 |
| 1938 | 4.845 | 6 | 11628 | 0.5814 |
| 1956 | 4.89 | 3 | 5868 | 0.2934 |
| 2549 | 6.3725 | 6 | 15294 | 0.7647 |
| 4296 | 10.74 | 1 | 4296 | 0.2148 |
Patient Demographics
| Demographic | Value |
|---|---|
| Cases ( | 18 |
| Age (y), mean ± SD | 67.8 ± 13.1 |
| Male, | 11 (61) |
| AMD/DME, | 12 (67)/6 (33) |
| Axial length (mm), mean ± SD | 23.7 ± 1.1 |
Figure 4.Clinical verification of the aflibercept assay using 18 patient samples. The left axis presents the aflibercept concentration (µg/mL) in regurgitate from needle holes, and the median with a 95% confidence interval is shown as a solid line.
Coefficients and P Values of the Multivariate Statistical Analysis
| Coefficient ( | ||
|---|---|---|
| Amount of Regurgitation Through Needle Holes (µL) | Concentration of Aflibercept in Regurgitation Through Needle Holes (µg/mL) | |
| Age (y) | 0.027 (0.79) | −47 (0.16) |
| Sex (male) | 0.46 (0.66) | 89 (0.78) |
| Disease type (AMD) | 0.85 (0.55) | 320 (0.46) |
| Axial length (mm) | 1.4 (0.18) | −18.8 (0.95) |