| Literature DB >> 35669243 |
Cong Zhang1,2, Fan Chao1,2, Shiyu Wang1,2, Dunsheng Han1,2, Gang Chen1,2.
Abstract
Objective: The detection of cell-free DNA (cfDNA) as a part of "liquid biopsy" of prostate cancer (PCa) has been widely explored. However, its diagnostic value for PCa remains controversial. Based on the data from the latest literature published in the past decade, the present review was conducted to clarify the diagnostic value of cfDNA in PCa.Entities:
Year: 2022 PMID: 35669243 PMCID: PMC9166979 DOI: 10.1155/2022/1505087
Source DB: PubMed Journal: J Oncol ISSN: 1687-8450 Impact factor: 4.501
Figure 1Flow diagram of study selection process.
Characteristics of the included studies.
| Country | Ethnicity | Case (Age, N) | Control (Age, N) | Control type | Target | Methylation | Specimen | Assay methods | Cutoff | Sensitivity | Specificity |
|---|---|---|---|---|---|---|---|---|---|---|---|
| China | Asian | N/A, 96 | N/A, 112 | Benign disease | CfDNA | No | Plasma | qPCR (quantitative) | 0.864 | 73.20% | 72.70% |
| China | Asian | N/A, 96 | N/A, 112 | Benign disease | CfDNA | No | Plasma | qPCR (quantitative) | 0.91 | 81.70% | 78.80% |
| American | American | 65.5, 89 | 62.9, 163 | Benign disease | GSTP1 | No | Serum | qPCR (quantitative) | 180 ng/ml | 44.90% | 71.80% |
| American | American | 65.5, 85 | 63.1, 156 | Benign disease | CfDNA | No | Serum | qPCR (quantitative) | 180 ng/ml | 94.10% | 21.80% |
| American | American | 65.5, 85 | 63.1, 156 | Benign disease | CfDNA | No | Serum | Pico green | 53.1 ng/ml | 94.10% | 15.40% |
| American | American | 65.5, 85 | 63.1, 156 | Benign disease | CfDNA | No | Serum | Uv absorbance | N/A | 94.10% | 11.50% |
| Brazil | American | 66.81, 133 | 66.40, 33 | Benign disease | CfDNA | No | Plasma | Pico green dsDNA quantification reagent kit | 140 ng/ml | 66.20% | 87.90% |
| American | American | 64.9, 34 | 64.5, 48 | Benign disease | GADD45a | Yes | Serum | Ms-SNuPE | 89.6 | 38.20% | 97.90% |
| American | American | 64.9, 34 | 64.5, 48 | Benign disease | CfDNA | No | Serum | qPCR (quantitative) | 188 | 50.00% | 89.58% |
| Italy | European | N/A, 29 | N/A, 25 | Benign disease | CfDNA | No | Urine Supernatant | qPCR (quantitative) | 0.04 ng/ul | 79.00% | 84.00% |
| Italy | European | N/A, 55 | N/A, 55 | Benign disease | CfDNA | No | Urine Supernatant | qPCR (quantitative) | 0.04 ng/ul | 58.00% | 47.00% |
| China | Asian | N/A, 98 | N/A, 47 | Benign disease | CDH13promoter | Yes | Serum | Methylation-specific polymerase chain reaction (MSP) | N/A | 44.90% | 100.00% |
| Japan | Asian | 72.2, 76 | 69.4, 20 | Benign disease | Hypermethylation APC | Yes | Serum | Methylation-specific polymerase chain reaction (MSP) | 0.002 | 15.00% | 100.00% |
| Japan | Asian | 72.2, 76 | 69.4, 20 | Benign disease | Hypermethylation GSTP1 | Yes | Serum | Methylation-specific polymerase chain reaction (MSP) | 0.147 | 29.00% | 100.00% |
| Japan | Asian | 72.2, 76 | 69.4, 20 | Benign disease | Hypermethylation MDR1 | Yes | Serum | Methylation-specific polymerase chain reaction (MSP) | 0.037 | 46.00% | 100.00% |
| Japan | Asian | 72.2, 76 | 69.4, 20 | Benign disease | Hypermethylation RASSF1 | Yes | Serum | Methylation-specific polymerase chain reaction (MSP) | 0.119 | 24.00% | 100.00% |
| Japan | Asian | 72.2, 76 | 69.4, 20 | Benign disease | Hypermethylation PTGS2 | Yes | Serum | Methylation-specific polymerase chain reaction (MSP) | 0.091 | 12.00% | 100.00% |
| Romania | European | 68.0, 91 | 64.0, 94 | Benign disease | RAR | Yes | Serum | Methylation-specific polymerase chain reaction (MSP) | N/A | 98.00% | 89.00% |
| Romania | European | 64.0, 31 | 68.0, 44 | Benign disease | GSTP1 | Yes | plasma | methylation-specific polymerase chain reaction (MSP) | N/A | 87.10% | 93.18% |
| American | American | 59.0, 84 | N/A, 30 | AC | MCAM | Yes | Serum | Pyrosequencing | N/A | 66.00% | 73.00% |
| American | American | 59.0, 84 | N/A, 30 | AC | MCAM/ | Yes | Serum | Pyrosequencing | N/A | 75.00% | 70.00% |
| Denmark | European | N/A, 27 | N/A, 10 | BPH | CCDC181/ST6GALNAC3/HAPLN3 | Yes | Serum | qMSP | N/A | 67.00% | 100.00% |
| Denmark | European | N/A, 27 | N/A, 10 | BPH | ZNF660 | Yes | Serum | ddMSP | N/A | 22.00% | 100.00% |
| Portugal | European | 71.0, 121 | 57.0, 136 | AC | FOXA1/RAR | Yes | Plasma | Multiplex qMSP | N/A | 72.00% | 72.00% |
| Portugal | European | 71.0, 121 | 57.0, 136 | AC | FOXA1/RAR | Yes | Plasma | Multiplex qMSP | N/A | 64.00% | 70.00% |
| Portugal | European | 71.0, 121 | 57.0, 136 | AC | FOXA1 | Yes | Plasma | Multiplex qMSP | N/A | 61.00% | 77.00% |
| Portugal | European | 71.0, 121 | 57.0, 136 | AC | GSTP1 | Yes | Plasma | Multiplex qMSP | N/A | 15.00% | 98.00% |
| Portugal | European | 71.0, 121 | 57.0, 136 | AC | HOXD3 | Yes | Plasma | Multiple qMSP | N/A | 80.00% | 43.00% |
| Portugal | European | 71.0, 121 | 57.0, 136 | AC | RAR | Yes | Plasma | Multiplex qMSP | N/A | 22.00% | 96.00% |
| Portugal | European | 71.0, 121 | 57.0, 136 | AC | RASSF1A | Yes | Plasma | Multiplex qMSP | N/A | 13.00% | 96.00% |
| Portugal | European | 71.0, 121 | 57.0, 136 | AC | SEP-19 | Yes | Plasma | Multiplex qMSP | N/A | 12.00% | 99.00% |
| Portugal | European | 71.0, 121 | 57.0, 136 | AC | SOX17 | Yes | Plasma | Multiplex qMSP | N/A | 29.00% | 93.00% |
BPH, benign prostatic hyperplasia; AC, asymptomatic control; cfDNA, cell-free DNA; qMSP, quantitative methylation-specific PCR; ddMSP, methylation-specific droplet digital PCR; N/A, not available; N, number.
Figure 2Quality assessments of selected studies based on the QUADAS-2 tool. (a) Risk of bias and application concerns summary; (b) Risk of bias and application concerns graph.
Figure 3The SEN, SPE, PLR, NLR, and DOR of cfDNA in the PCa diagnosis. (a) The cfDNA's SEN and SPE; (b) the cfDNA's PLR and NLR; (c) the cfDNA's DOR and related diagnostic score.
Figure 4The summary receiver operating characteristic graph of eligible studies.
Summary diagnostic performance of cell-free DNA for prostate cancer.
| Group | Subgroup | SEN (95% CI) | SPE (95% CI) | PLR (95% CI) | NLR (95% CI) | DOR (95% CI) | AUC (95% CI) |
|---|---|---|---|---|---|---|---|
| Ethnicity | Asian | 0.38 (0.22, 0.58) | 1.00 (0.77, 1.00) | 176.9 (1.6, 19814.7) | 0.62 (0.45, 0.84) | 287 (3, 29034) | 0.81 (0.77, 0.84) |
| European | 0.53 (0.34, 0.71) | 0.90 (0.80, 0.95) | 5.3 (2.9, 9.6) | 0.53 (0.36, 0.76) | 10 (5, 21) | 0.83 (0.79, 0.86) | |
| American | 0.75 (0.56, 0.87) | 0.63 (0.35, 0.84) | 2.0 (1.2, 3.5) | 0.40 (0.29, 0.35) | 5 (3, 9) | 0.76 (0.72, 0.79) | |
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| Sample types | Plasma and serum | 0.55 (0.41, 0.68) | 0.90 (0.81, 0.95) | 5.5 (3.2, 9.4) | 0.50 (0.39, 0.64) | 11 (7, 18) | 0.81 (0.77, 0.84) |
| Plasma | 0.50 (0.33, 0.67) | 0.88 (0.78, 0.94) | 4.3 (2.8, 6.4) | 0.57 (0.43, 0.75) | 8 (5, 11) | 0.79 (0.75, 0.82) | |
| Serum | 0.58 (0.39, 0.76) | 0.95 (0.77, 0.99) | 11.6 (2.8, 48.7) | 0.44 (0.29, 0.66) | 26 (7, 100) | 0.84 (0.80, 0.87) | |
| Urine supernatant | 0.65 (−) | 0.59 (−) | 1.59 (−) | 0.59 (−) | 2.69 (−) | — | |
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| Methylation | Yes | 0.44 (0.31, 0.58) | 0.95 (0.89, 0.98) | 8.7 (4.5, 16.6) | 0.59 (0.47, 0.75) | 15 (7, 29) | 0.84 (0.80, 0.87) |
| No | 0.78 (0.64, 0.88) | 0.59 (0.36, 0.78) | 1.9 (1.2, 2.9) | 0.37 (0.26, 0.53) | 5 (3, 9) | 0.76 (0.73, 0.80) | |
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| Overall | 0.56 (0.43, 0.68) | 0.89 (0.80, 0.95) | 5.1 (3.1, 8.6) | 0.49 (0.39, 0.63) | 10 (6, 17) | 0.80 (0.76, 0.83) | |
SEN, sensitivity; SPE, specificity; PLR, positive likelihood ratios; PLR, positive likelihood ratios; NLR, negative likelihood ratios; DOR, diagnostic odds ratios; AUC, the area under curve.
Figure 5Forest plots of cfDNA's PLR and NLR in the diagnosis of PCa.
Figure 6Fagan's nomogram for the post-test probabilities calculation.
Figure 7Forest plot of univariable metaregression based on sensitivity and specificity.
Figure 8Sensitivity analysis of selected studies.
Figure 9Deek's test for the assessment for potential publication bias of selected studies.