| Literature DB >> 35668744 |
Yichen Liu1, Lei Wang1, Wen Liu1.
Abstract
Circular RNAs (circRNAs) are a class of non-coding RNAs with loop structures that are stable and widely distributed in different tumor tissues. The development of high-throughput sequencing and in silico tools has enabled the discovery of numerous functional circRNAs. Hepatocellular carcinoma (HCC) is a malignant tumor, and the mechanism involved in its progression has remained unclear. In recent years, an increasing number of circRNAs have been identified in HCC, contributing to tumorigenesis and metastasis and with the potential role as biomarkers through competitive endogenous RNAs (ceRNAs) as miRNA sponges or by interacting with RNA binding proteins (RBPs). In this review, we summarize the regulatory roles of circRNAs in HCC development as well as the use of bioinformatics tools in the annotation and prioritization of circRNA and highlight the participation of exosomal circRNAs in HCC metastasis and drug resistance.Entities:
Keywords: HCC; biomarker; circRNAs; exosome; metastasis; tumorigenesis
Year: 2022 PMID: 35668744 PMCID: PMC9166687 DOI: 10.2147/CMAR.S362594
Source DB: PubMed Journal: Cancer Manag Res ISSN: 1179-1322 Impact factor: 3.602
Dysregulated Exosomal circRNAs in HCC
| Ref | CircRNA Name | Parental Gene | Expression in HCC | Regulatory Axis | Function | Sample Sources | Year |
|---|---|---|---|---|---|---|---|
| [ | circPTGR1 | PTGR1 | Upregulated | miR449a/MET | Increasing migratory and invasion and metastasis, potential prognosis biomarker | HepG2, 97L, LM3; serum from HCC patients | 2019 |
| [ | circ-DB | TNFRSF1A | Upregulated | miR-34a/USP7 | Promoting tumor growth and reducing DNA damage | HepG2, Hepa 1–6, 3T3L1; HCC tissue | 2018 |
| [ | hsa_circ_0051443 | TRAPPC6A | Downregulated | miR-331-3p/BAK1 | Suppressing HCC progression, promoting cell apoptosis and arresting the cell cycle, diagnosis biomarker of HCC | HL-7702, HuH7, Hep3b; plasma samples from HCC patients and health control, tissue and adjacent from HCC patients | 2020 |
| [ | circRNA-100338 | SNX27 | Upregulated | Not provide | Enhancing invasiveness and angiogenesis, promoting metastasis, as a risk indicator of pulmonary metastasis and poor survival. | L02, Hep3B, HLE, Huh7, BEL7402, SMCC7721, MHCC97L, MHCC97H, HCCLM3 and HCCLM6, HUVECs; HCC tissues, lung metastatic nodules or pulmonary puncture specimens, plasma exosomes | 2020 |
| [ | circFBLIM1 | FBLIM1 | Upregulated | miR-338/LRP6 | Promoting HCC progression and glycolysis | THLE-2, SNU-387, Huh7; serum from HCC patients and healthy control | 2020 |
| [ | circRNA-SORE | TLE4 | Upregulated | YBX1 | Mediating sorafenib resistance in HCC | HepG2-SR, LM3-SR, and SKhep1-SR; Tissue samples and blood samples from HCC patients | 2020 |
| [ | circUHRF1 | UHRF1 | Upregulated | miR-449c-5p/TIM-3 | Contributing to immunosuppression by inducing NK cell dysfunction in HCC, casuing resistance to anti-PD1 immunotherapy | HepG2, HCCLM3, SMMC- 7721, Huh 7, PLC/PRF/5, and Hep3B; serum of HCC patients | 2020 |
| [ | circTMEM45A | TMEM45A | Upregulated | miR-665/IGF2 | Promoting cell mobility in vitro, as well as in vivo tumorigenesis, acting as a diagnosis biomarker | L02, Hep3B, HLE, Huh7, BEL7402, SMCC7721, MHCC97L, MHCC97H, HCCLM3, HCCLM6; HCC tissues and adjacent normal tissues | 2020 |
| [ | circANTXR1 | ANTXR1 | Upregulated | miR-532-5p/XRCC5 | Promoting the proliferation, migration and invasion of HCC cells | HuH-7, HCCLM3, THLE-2; Peripheral blood, tumor tissues and normal tissues from HCC patients | 2021 |
| [ | Cdr1as | CDR1-AS | Upregulated | miR-1270/AFP | Promoting proliferative and migratory | SMMC-7721, Bel-7402, HepG2, Hep3B, Huh-7, HB611; HCC tissues and the matched para-carcinoma tissues from HCC patients | 2019 |
| [ | circAKT3 | AKT3 | Upregulated | Not provide | Associating with a higher risk of HCC recurrence and mortality | Serum samples from HCC patients and healthy control | 2020 |
CircRNA-Related Databases
| Ref | Database Name | Url | Description | Lasted Update Time | Note |
|---|---|---|---|---|---|
| [ | circBase | Multiple species circRNAs with putative sequence | Jul-2017 | ||
| [ | CircAtlas | Large sample size based circRNA database across six vertebrate species | Mar-2020 | ||
| [ | circRNADb | Database with protein-coding annotations | Oct-2016 | ||
| [ | circBank | Human annotated circRNAs from different source | Apr-2019 | ||
| [ | ENCORI | Comprehensive RNA interactome database, previously called starBase | 2020 | ||
| [ | exoRBase | Extracellular vesicles (EVs) derived long RNAs based annotation | Nov-2021 | ||
| [ | CSCD | Cancer-specific circRNAs | Jan-2018 | ||
| [ | CircInteractome | circRNA interactome database | Jan-2020 | ||
| [ | CIRCpedia | Comprehensive circRNA annotation from over 180 RNA-seq datasets across six different species | Aug-2018 | ||
| [ | MiOncoCirc | Extensive clinical, cancer-centric resource of circRNAs. | Feb-2019 | ||
| [ | TSCD | Comprehensive view of TS circRNAs in human and mouse | Nov-2017 | ||
| [ | DeepBase | Interactive display and analysis of the expression, evolution, and functions of various ncRNAs by deeply mining thousands of high-throughput sequencing data from tissue, tumor and exosome samples | Nov-2020 | ||
| [ | CircFunBase | Functional circRNA database with visualization of circRNA-miRNA interaction networks | Oct-2019 | ||
| [ | CircNet | An updated database for exploring circular RNA regulatory networks in cancers | Nov-2021 | ||
| [ | Circ2Traits | Comprehensive knowledgebase of potential association of circular RNAs with diseases in human | Dec-2013 | NA | |
| [ | CircR2Disease | A comprehensive resource for circRNA deregulation in various diseases | May-2018 | NA |
Abbreviation: NA, not accessible.