Literature DB >> 35666274

Suggestion for a new bacteriophage genus for the Klebsiella pneumoniae phage vB_KpnS-Carvaje.

Jéssica C Sousa1,2,3, Sanna Sillankorva1, Alberta Faustino4, Carla M Carvalho5.   

Abstract

This work describes the newly isolated Klebsiella pneumoniae phage vB_KpnS-Carvaje that presents unique features in relation to other phages reported to date. These findings provide new insights into the diversity and evolutionary pathways of Klebsiella phages. The genome characterization of the Carvaje phage revealed that its genome length is approximately 57 kb with 99 open reading frames (ORFs), 33 of which have assigned functions while 66 are unknown. This phage differs from other sequenced Klebsiella phages, showing the closest resemblance (up to 65.32%) with Salmonella phages belonging to the Nonanavirus and Sashavirus genera. Comparisons at the amino acid level and phylogeny analysis among homologous genomes indicate that the Klebsiella Carvaje phage forms a novel sister taxon within the node of the Nonanaviruses and Sashaviruses cluster. Due to the unique features of the Carvaje phage, we propose the constitution of a new genus within the Caudoviricetes class. Further studies include the exploitation of this phage and its identified proteins for the control of Klebsiella infections and as recognition molecules in diagnostic methods.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Bacteriophages; Genome; Genus; Klebsiella pneumoniae

Mesh:

Year:  2022        PMID: 35666274     DOI: 10.1007/s00294-022-01242-2

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   2.695


  61 in total

1.  Mauve: multiple alignment of conserved genomic sequence with rearrangements.

Authors:  Aaron C E Darling; Bob Mau; Frederick R Blattner; Nicole T Perna
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

2.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  Systematic identification of hypothetical bacteriophage proteins targeting key protein complexes of Pseudomonas aeruginosa.

Authors:  An Van den Bossche; Pieter-Jan Ceyssens; Jeroen De Smet; Hanne Hendrix; Hannelore Bellon; Nadja Leimer; Jeroen Wagemans; Anne-Sophie Delattre; William Cenens; Abram Aertsen; Bart Landuyt; Leonid Minakhin; Konstantin Severinov; Jean-Paul Noben; Rob Lavigne
Journal:  J Proteome Res       Date:  2014-09-15       Impact factor: 4.466

4.  BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons.

Authors:  Nabil-Fareed Alikhan; Nicola K Petty; Nouri L Ben Zakour; Scott A Beatson
Journal:  BMC Genomics       Date:  2011-08-08       Impact factor: 3.969

5.  The in vivo efficacy of two administration routes of a phage cocktail to reduce numbers of Campylobacter coli and Campylobacter jejuni in chickens.

Authors:  Carla M Carvalho; Ben W Gannon; Deborah E Halfhide; Silvio B Santos; Christine M Hayes; John M Roe; Joana Azeredo
Journal:  BMC Microbiol       Date:  2010-09-01       Impact factor: 3.605

6.  Bacteriophages as sources of small non-coding RNA molecules.

Authors:  Sylwia Bloch; Natalia Lewandowska; Grzegorz Węgrzyn; Bożena Nejman-Faleńczyk
Journal:  Plasmid       Date:  2020-08-05       Impact factor: 3.466

7.  Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data.

Authors:  Tim Carver; Simon R Harris; Matthew Berriman; Julian Parkhill; Jacqueline A McQuillan
Journal:  Bioinformatics       Date:  2011-12-22       Impact factor: 6.937

8.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

9.  Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data.

Authors:  Richard J S Baerends; Wiep Klaas Smits; Anne de Jong; Leendert W Hamoen; Jan Kok; Oscar P Kuipers
Journal:  Genome Biol       Date:  2004-04-05       Impact factor: 13.583

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

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