| Literature DB >> 35650177 |
Miriam A Schiele1, Jan Lipovsek1,2, Pascal Schlosser2,3, Michael Soutschek4, Gerhard Schratt4, Michael Zaudig5, Götz Berberich5, Anna Köttgen2, Katharina Domschke6,7.
Abstract
In adult patients with obsessive-compulsive disorder (OCD), altered DNA methylation has been discerned in several candidate genes, while DNA methylation on an epigenome-wide level has been investigated in only one Chinese study so far. Here, an epigenome-wide association study (EWAS) was performed in a sample of 76 OCD patients of European ancestry (37 women, age ± SD: 33.51 ± 10.92 years) and 76 sex- and age-matched healthy controls for the first time using the Illumina MethylationEPIC BeadChip. After quality control, nine epigenome-wide significant quantitative trait methylation sites (QTMs) and 21 suggestive hits were discerned in the final sample of 68 patients and 68 controls. The top hit (cg24159721) and four other significant QTMs (cg11894324, cg01070250, cg11330075, cg15174812) map to the region of the microRNA 12136 gene (MIR12136). Two additional significant CpG sites (cg05740793, cg20450977) are located in the flanking region of the MT-RNR2 (humanin) like 8 gene (MT-RNRL8), while two further QTMs (cg16267121, cg15890734) map to the regions of the MT-RNR2 (humanin) like 3 (MT-RNRL3) and MT-RNR2 (humanin) like 2 (MT-RNRL2) genes. Provided replication of the present findings in larger samples, the identified QTMs might provide more biological insight into the pathogenesis of OCD and thereby could in the future serve as peripheral epigenetic markers of OCD risk with the potential to inform targeted preventive and therapeutic efforts.Entities:
Mesh:
Year: 2022 PMID: 35650177 PMCID: PMC9160220 DOI: 10.1038/s41398-022-01996-w
Source DB: PubMed Journal: Transl Psychiatry ISSN: 2158-3188 Impact factor: 7.989
Epigenome-wide significant (p < 5.77E-8) QTM sites.
| Rank | CpG site | Chromosome: positiona | Nearest RefSeq curated gene (relation) | Further RefSeq annotations | effect (Δ | Cohen’s | Direction of differential methylation | |
|---|---|---|---|---|---|---|---|---|
| 1 | cg24159721 | chr1:629790 | LOC101928626 (+781 bp of start site, upstream) | MT-ND2 pseudogene 28b | 8.7E-12 | 0.032 | 1.00 | Case > Control |
| 2 | cg05740793 | chr11:10509544 | MT-RNR2 like 8 (+358 bp of start site, upstream) | microRNA 4485 | 1.9E-10 | 0.028 | 0.91 | Case > Control |
| 3 | cg20450977 | chr11:10507916 | MT-RNR2 like 8 (3’UTR) | microRNA 4485 | 3.3E-10 | 0.015 | 0.89 | Case > Control |
| 4 | cg16267121 | chr20:57360342 | Ribonucleic Acid Export 1 (Body) | MT-RNR2 like 3 | 8.3E-10 | 0.017 | 0.87 | Case > Control |
| 5 | cg15890734 | chr5:80651415 | Dihydrofolate Reductase (Body) | MT-RNR2 like 2 | 1.3E-09 | 0.015 | 0.85 | Case > Control |
| 6 | cg11894324 | chr1:629545 | LOC101928626 (+536 bp of start site, upstream) | MT-ND2 pseudogene 28b | 2.9E-09 | 0.023 | 0.83 | Case > Control |
| 7 | cg01070250 | chr1:634307 | microRNA 12136 (+1894 bp of start site, upstream) | MT-CO1 pseudogene 12b | 1.3E-08 | 0.026 | 0.79 | Case > Control |
| 8 | cg11330075 | chr1:632058 | microRNA 12136 (−355 bp of start site, downstream) | MT-CO1 pseudogene 12b | 4.4E-08 | 0.015 | 0.75 | Case > Control |
| 9 | cg15174812 | chr1:630792 | microRNA 12136 (−1621 bp of start site, downstream) | MT-CO1 pseudogene 12b | 4.6E-08 | 0.012 | 0.75 | Case > Control |
QTM quantitative trait methylation.
aBased on GRCh38.p13.
bRefSeqOther (not included in RefSeqCurated).
Fig. 1Manhattan plot of the matched case–control EWAS in OCD.
Statistical significance (red horizontal line) was defined as p < 5.77E-8 (=0.05/865,859), corresponding to a Bonferroni correction for the 865,859 evaluated CpG sites. Dots for cg15174812 and cg11330075 are overlapping. Suggestive evidence was defined as p < 1E-5 (blue horizontal line).
Fig. 2QTM locus on chromosome 1.
Gene annotated display of all tested CpGs and their p-values in the region (± ~5 kb) of the top QTM (quantitative trait methylation) site (cg24159721) as a result of a case–control EWAS in OCD. RefSeqOther: not included in RefSeqCurated.
Fig. 3QTM locus on chromosome 11.
Gene annotated display of all tested CpGs and their p-values in the region of the QTM (quantitative trait methylation) site cg20450977 (± ~7 kb) as a result of a case–control EWAS in OCD.