Literature DB >> 35644176

Purification and characterization of sequential cobalamin-dependent radical SAM methylases ThnK and TokK in carbapenem β-lactam antibiotic biosynthesis.

Erica K Sinner1, Craig A Townsend2.   

Abstract

ThnK and TokK are cobalamin-dependent radical S-adenosylmethionine enzymes that catalyze sequential methylations of a common carbapenem biosynthetic intermediate. ThnK was an early characterized member of the subfamily of cobalamin-dependent radical S-adenosylmethionine enzymes. Since initial publication of the ThnK function, the field has progressed, and we have made methodological strides in the expression and purification of this enzyme and its ortholog TokK. An optimized protocol for obtaining the enzymes in pure and active form has enabled us to characterize their reactions and gain greater insight into the kinetic behavior of the sequential methylations they catalyze. We share here the methods and strategy that we have developed through our study of these enzymes.
Copyright © 2022 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  B(12); Biosynthesis; COPASI; Cobalamin-dependent radical SAM enzyme; Natural products; Sequential methylation; ThnK; Time-course assay; TokK; VCell; β-Lactam

Mesh:

Substances:

Year:  2021        PMID: 35644176      PMCID: PMC9178924          DOI: 10.1016/bs.mie.2021.09.014

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.682


  27 in total

1.  The biosynthetic gene cluster for the beta-lactam carbapenem thienamycin in Streptomyces cattleya.

Authors:  Luz Elena Núñez; Carmen Méndez; Alfredo F Braña; Gloria Blanco; José A Salas
Journal:  Chem Biol       Date:  2003-04

2.  COPASI--a COmplex PAthway SImulator.

Authors:  Stefan Hoops; Sven Sahle; Ralph Gauges; Christine Lee; Jürgen Pahle; Natalia Simus; Mudita Singhal; Liang Xu; Pedro Mendes; Ursula Kummer
Journal:  Bioinformatics       Date:  2006-10-10       Impact factor: 6.937

Review 3.  Mechanistic insights into class B radical-S-adenosylmethionine methylases: ubiquitous tailoring enzymes in natural product biosynthesis.

Authors:  Shanshan Zhou; Lona M Alkhalaf; Emmanuel Lc de Los Santos; Gregory L Challis
Journal:  Curr Opin Chem Biol       Date:  2016-09-12       Impact factor: 8.822

4.  Isolation of a protein containing tightly bound 5-methoxybenzimidazolylcobamide (factor 3m) from Clostridium thermoaceticum.

Authors:  L G Ljungdahl; J LeGall; J P Lee
Journal:  Biochemistry       Date:  1973-04-24       Impact factor: 3.162

Review 5.  A Rich Man, Poor Man Story of S-Adenosylmethionine and Cobalamin Revisited.

Authors:  Jennifer Bridwell-Rabb; Tsehai A J Grell; Catherine L Drennan
Journal:  Annu Rev Biochem       Date:  2018-06-20       Impact factor: 23.643

Review 6.  Convergent biosynthetic pathways to β-lactam antibiotics.

Authors:  Craig A Townsend
Journal:  Curr Opin Chem Biol       Date:  2016-09-29       Impact factor: 8.822

7.  Spectroscopic and functional characterization of iron-sulfur cluster-bound forms of Azotobacter vinelandii (Nif)IscA.

Authors:  Daphne T Mapolelo; Bo Zhang; Sunil G Naik; Boi Hanh Huynh; Michael K Johnson
Journal:  Biochemistry       Date:  2012-10-04       Impact factor: 3.162

8.  Consecutive radical S-adenosylmethionine methylations form the ethyl side chain in thienamycin biosynthesis.

Authors:  Daniel R Marous; Evan P Lloyd; Andrew R Buller; Kristos A Moshos; Tyler L Grove; Anthony J Blaszczyk; Squire J Booker; Craig A Townsend
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

9.  Mechanistic Studies on CysS - A Vitamin B12-Dependent Radical SAM Methyltransferase Involved in the Biosynthesis of the tert-Butyl Group of Cystobactamid.

Authors:  Yuanyou Wang; Tadhg P Begley
Journal:  J Am Chem Soc       Date:  2020-05-21       Impact factor: 15.419

10.  Structural basis for non-radical catalysis by TsrM, a radical SAM methylase.

Authors:  Hayley L Knox; Percival Yang-Ting Chen; Anthony J Blaszczyk; Arnab Mukherjee; Tyler L Grove; Erica L Schwalm; Bo Wang; Catherine L Drennan; Squire J Booker
Journal:  Nat Chem Biol       Date:  2021-01-18       Impact factor: 15.040

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  3 in total

1.  ThnL, a B12-dependent radical S-adenosylmethionine enzyme, catalyzes thioether bond formation in carbapenem biosynthesis.

Authors:  Erica K Sinner; Rongfeng Li; Daniel R Marous; Craig A Townsend
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-15       Impact factor: 12.779

2.  Evolution of Methods for the Study of Cobalamin-Dependent Radical SAM Enzymes.

Authors:  Erica K Sinner; Daniel R Marous; Craig A Townsend
Journal:  ACS Bio Med Chem Au       Date:  2021-10-13

3.  Stereochemical course of cobalamin-dependent radical SAM methylation by TokK and ThnK.

Authors:  Michael S Lichstrahl; Craig A Townsend; Erica K Sinner
Journal:  RSC Chem Biol       Date:  2022-06-06
  3 in total

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