| Literature DB >> 35636827 |
Gama Bandawe1, Moses Chitenje2, Joseph Bitiliyu-Bangoh3, Elizabeth Kampira4.
Abstract
Deployment of molecular testing for SARS-CoV-2 in resource-limited settings is challenging. Scale-up of molecular had to be conducted with a laboratory system strengthening approach that emphasize laboratory integration. National reference laboratories play a central role. In Malawi the molecular testing was underpinned by existing pathogen control programs for human immunodeficiency virus and tuberculosis that use Abbott and GeneXpert machines and reagents. Despite this, the impact on these programs was well managed. Antigen testing increased access to testing. Pooled testing and direct-to-polymerase chain reaction methods have the potential to save costs and further increase access to molecular tests.Entities:
Keywords: Cost reduction; Laboratory strengthening; Molecular testing; National reference laboratory; SARS-CoV-2
Mesh:
Year: 2022 PMID: 35636827 PMCID: PMC8885302 DOI: 10.1016/j.cll.2022.02.008
Source DB: PubMed Journal: Clin Lab Med ISSN: 0272-2712 Impact factor: 2.172
Summary of some of the activities undertaken to achieve successful roll out of molecular testing services for SARS-CoV-2 in Malawi under 8 thematic areas
| Thematic Area | Activities | Partners | Main Outcomes/Highlights |
|---|---|---|---|
| Equipment | Inventory of available platforms | MoH | Updated inventory available at central level |
| Servicing and calibration of equipment | MoH | Auxiliary equipment with valid calibration certificates. Securing of service contracts | |
| Biosafety cabinets | CDC Malawi through UMB | Functional and fully serviced biosafety cabinets in every testing site | |
| Procurement of Abbott m2000 platform | CDC Malawi | Scaled up capacity for molecular testing | |
| Infrastructure | Demarcation/partitioning of laboratories for molecular testing | MoH, CDC Malawi through UMB | All sites partitioned to accommodate separate molecular testing. |
| personnel | Recruitment of additional laboratory | MoH | Additional 150 laboratory personnel recruited. |
| Procurement of reagents and consumables | Determining needs | MoH | Constant supply of reagents |
| Coordination with development partners | MoH | Ensured collaborative effort and maximum resource allocation | |
| Supply chain and logistics | UNICEF/WFP | Ensured delivery of reagents, supplies, and PPE amid global supply chain constraints | |
| Training | Training in sample collection and processing | MoH | Training of laboratory officers in SARS-CoV-2 testing to scale-up testing capacity |
| Sample transportation | Development of a transportation system | UMB/Riders for Health | Successful transportation of 231,850 samples to molecular laboratories. |
| Data management | Production of case-based surveillance form | MoH | Standardization of data |
| Development of a national dashboard | I-TECH | Stakeholders are able to access data through the dashboard | |
| connectivity | EGPAF | Majority (85%) of testing sites are connected to the dash board | |
| Quality management | Approval of laboratories to perform SARS-CoV-2 PCR testing | MoH-HTSS | 15 molecular laboratories and 320 antigen testing sites have been approved |
| Validation of different platforms | PHL | Validated 3 molecular platforms and 4 antigen test kits | |
| EQA | PHIM supported by UMB | Ensured accurate result generation using annual EQA with score of 94% |
Full names of key partners and organisations are given below the table
Abbreviations: CDC, Centers for Disease Control and Prevention; CHAI, Clinton Health Access Initiative; EGPAF, Elizabeth Glazer Paediatric AIDS Foundation; HTSS, Health Technical Support Services; I-TECH, International Training and Education Center for Health; PHL, Public Health Laboratory; MoH, Ministry of Health; UMB, University of Maryland Baltimore; UNICEF, United Nations Children's Fund; USAID, United States Agency for International Development; WFP, World Food Program; WHO, World Health Organization.
Fig. 1Map of testing sites for SARS-CoV-2 in Malawi. (A) The 15 RT-qPCR sites activated in the first 2 months from April 2020 to May 2020. (B) The activation of GeneXpert sites (37) in all districts of the country. (C) The rapid antigen testing sites activated in November of 2020 (210 sites).