| Literature DB >> 35627274 |
Manuela Priolo1, Cecilia Mancini2, Simone Pizzi2, Luigi Chiriatti1, Francesca Clementina Radio2, Viviana Cordeddu3, Letizia Pintomalli1, Corrado Mammì1, Bruno Dallapiccola2, Marco Tartaglia2.
Abstract
OBJECTIVE: The co-occurrence of pathogenic variants has emerged as a relatively common finding underlying complex phenotypes. Here, we used whole-exome sequencing (WES) to solve an unclassified multisystem clinical presentation. PATIENTS AND METHODS: A 20-year-old woman affected by moderate intellectual disability (ID), dysmorphic features, hypertrichosis, scoliosis, recurrent bronchitis, and pneumonia with bronchiectasis, colelithiasis, chronic severe constipation, and a family history suggestive of autosomal dominant recurrence of polycystic kidney disease was analyzed by WES to identify the genomic events underlying the condition.Entities:
Keywords: CFTR; HAFOUS; PKD2; USP7; WES; cystic fibrosis; dual molecular diagnosis
Mesh:
Substances:
Year: 2022 PMID: 35627274 PMCID: PMC9141324 DOI: 10.3390/genes13050889
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Figure 1Clinical features of the proband at different ages, and family pedigree reporting phenotypes and genotypes of individual members. Facial features at 1 year (a), 3 years (b), 4 years (c), 7 years (f), 10 years (g), and 20 years (h). The proband shows bilateral supernumerary nipples (black arrows) (d), short feet (e,j), and low posterior hairline (i). The tree of the family shows transmission of the pathogenic PKD2 and CFTR variants, and the de novo occurrence of the pathogenic USP7 variant (k).
Clinical features of patients with pathogenic USP7 variants.
| Reported Cases | N = 8 | N = 5 | N = 8 | N = 3 | Present Report | Total, |
|---|---|---|---|---|---|---|
|
| gene deletions a,b | truncating variants b,c | missense variants b | splice site variants b | truncating variant | |
| Sex | 5M, 3F | 1M, 4F | 2M, 6F | 3M | F | 11M, 14F |
| Dysmorphic facial features | 4/6 | 5/5 | 7/7 | 3/3 | + | 20/22 |
|
| ||||||
| Developmental delay/intellectual disability | 8/8 | 5/5 | 7/8 | 3/3 | + | 24/25 |
| Decreased fetal movement | 0/6 | 1/3 | 1/3 | 0/3 | + | 3/16 |
| Neonatal hypotonia | 1/6 | 5/5 | 4/7 | 0/3 | + | 11/22 |
| Hypotonia | 4/7 | 5/5 | 5/7 | 1/3 | + | 16/22 |
| Speech delay | 8/8 | 5/5 | 8/8 | 3/3 | + | 25/25 |
| Nonverbal | 1/8 | 0/3 | 3/8 | 0/3 | - | 4/22 |
| Walking milestone age (months) | 28 (mean) | 25 (mean) | 57 (mean) | 21 (mean) | 20 | |
| Sitting without support (months) | 14 (mean) | 11.6 (mean) | 17 (mean) | 11 (mean) | 12 | |
|
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| Abnormal MRI | 3/4 | 2/4 | 7/7 | 0/1 | + | 13/17 |
| Seizures | 4/8 | 3/5 | 3/7 | 0/3 | - | 10/24 |
| Abnormal gait | 2/5 | 0/2 | 4/4 | 0/3 | + | 7/15 |
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| ||||||
| Behavioral anomalies | 7/8 | 1/3 | 2/7 | 2/3 | + | 15/22 |
| Autism spectrum disorder | 7/7 | 0/3 | 2/4 | 0/3 | - | 9/17 |
| attention deficit-hyperactivity disorder | 3/7 | 0/2 | 1/4 | 2/3 | + | 7/17 |
| Skin picking | 2/8 | 0/4 | 1/5 | 0/3 | - | 3/21 |
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| Feeding problems, need for special feeding tools | 4/7 | 2/4 | 4/8 | 2/3 | + | 13/23 |
| Gastroesophageal reflux | 3/5 | 2/3 | 4/6 | 1/3 | + | 11/18 |
| Difficulty in gaining weight | 1/6 | 1/3 | 5/7 | 2/3 | + | 10/20 |
| Chronic constipation | 3/5 | 1/2 | 1/6 | 0/3 | + | 6/17 |
| Neonatal poor suck | 2/6 | 2/5 | 1/4 | 0/3 | + | 6/19 |
| Excessive weight gain | 0/6 | 0/4 | 0/6 | 3/3 | - | 3/20 |
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| Asthma | 1/4 | 2/3 | 1/4 | 2/3 | - | 6/15 |
| Sleep apnea/sleep disturbance | 3/7 | 1/3 | 1/7 | 0/3 | + | 6/21 |
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| Short stature | 2/7 | 1/4 | 3/6 | 0/3 | - | 6/21 |
| Scoliosis/kyphosis | 2/6 | 0/4 | 1/7 | 3/3 | + | 7/21 |
| Contractures | 2/6 | 2/4 | 0/4 | 0/3 | + | 5/18 |
| Small hands | 2/6 | 2/4 | 0/5 | 0/3 | + | 5/19 |
| Small feet | 1/6 | 2/4 | 1/6 | 0/3 | + | 5/20 |
| Hip dysplasia | 0/6 | 0/4 | 2/8 | 0/3 | + | 3/22 |
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| Eye abnormalities | 6/8 | 4/5 | 4/8 | 1/3 | + | 16/25 |
| Hearing difficulties | 1/7 | 1/4 | 0/8 | 0/3 | + | 3/23 |
Modified from Ref. [6]. M, male; F, female. a Ref. [5]. b Ref. [6]. c Ref. [7].
Facial features of individuals with pathogenic USP7 variants.
| Dysmorphic Features (Human Phenotype Ontology Term) | Fountain et al., 2019 [ | Capra et al., 2020 [ | Present Case | Total |
|---|---|---|---|---|
| Low-set eyebrows with respect to the upper eyelid | (11/14) | NA | + | 12/15(80%) |
| Deeply set eyes | 14/14 | NA | + | 15/15 (100%) |
| Prominent nasal septum | 12/14 | NA | + | 13/15 (87%) |
| Low hanging septum of nose (HP:0005322) | 14/14 | + | + | 16/16 (100%) |
| Long palpebral fissures | 12/14 | + | + | 14/16 (87%) |
| Long eyelashes | NA | NA | + | |
| Protruding ears | NA | NA | + | |
| Short philtrum | 12/14 | - | + | 13/16 81% |
| Prominent philtrum | 10/14 | - | + | 11/16 68% |
| Thin upper lip | 9/14 | + | + | 11/16 68% |
| Low posterior hairline | NA | NA | + |
NA, not available.