Literature DB >> 35610417

The Structure-Based Molecular-Docking Screen Against Core Clock Proteins to Identify Small Molecules to Modulate the Circadian Clock.

Seref Gul1, Ibrahim Halil Kavakli2,3.   

Abstract

Circadian rhythms are part of the body's clock, which regulates several physiological and biochemical variables according to the 24-h cycle. Ample evidence indicated disturbance of the circadian clock leads to an increased susceptibility to several diseases. Therefore, a great effort has been made to find small molecules that regulate circadian rhythm by high-throughput methods. Having crystal structures of core clock proteins, makes them amenable to structure-based drug design studies. Here, we describe virtual screening methods that can be utilized for the identification of small molecules regulating the activity of core clock protein Cryptochrome 1.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Circadian rhythm; Cryptochrome; Docking; Drug discovery; Virtual screening

Mesh:

Substances:

Year:  2022        PMID: 35610417     DOI: 10.1007/978-1-0716-2249-0_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  29 in total

1.  Circadian clocks: genes, sleep, and cognition.

Authors:  Charalambos P Kyriacou; Michael H Hastings
Journal:  Trends Cogn Sci       Date:  2010-04-24       Impact factor: 20.229

Review 2.  The Photolyase/Cryptochrome Family of Proteins as DNA Repair Enzymes and Transcriptional Repressors.

Authors:  Ibrahim Halil Kavakli; Ibrahim Baris; Mehmet Tardu; Şeref Gül; Haşimcan Öner; Sibel Çal; Selma Bulut; Darya Yarparvar; Çağlar Berkel; Pınar Ustaoğlu; Cihan Aydın
Journal:  Photochem Photobiol       Date:  2017-01-09       Impact factor: 3.421

3.  A circadian gene expression atlas in mammals: implications for biology and medicine.

Authors:  Ray Zhang; Nicholas F Lahens; Heather I Ballance; Michael E Hughes; John B Hogenesch
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

4.  Differential effects of PER2 phosphorylation: molecular basis for the human familial advanced sleep phase syndrome (FASPS).

Authors:  Katja Vanselow; Jens T Vanselow; Pål O Westermark; Silke Reischl; Bert Maier; Thomas Korte; Andreas Herrmann; Hanspeter Herzel; Andreas Schlosser; Achim Kramer
Journal:  Genes Dev       Date:  2006-09-18       Impact factor: 11.361

5.  Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism.

Authors:  Saikumari Y Krishnaiah; Gang Wu; Brian J Altman; Jacqueline Growe; Seth D Rhoades; Faith Coldren; Anand Venkataraman; Anthony O Olarerin-George; Lauren J Francey; Sarmistha Mukherjee; Saiveda Girish; Christopher P Selby; Sibel Cal; Ubeydullah Er; Bahareh Sianati; Arjun Sengupta; Ron C Anafi; I Halil Kavakli; Aziz Sancar; Joseph A Baur; Chi V Dang; John B Hogenesch; Aalim M Weljie
Journal:  Cell Metab       Date:  2017-04-04       Impact factor: 27.287

Review 6.  The mammalian circadian timing system: from gene expression to physiology.

Authors:  Frédéric Gachon; Emi Nagoshi; Steven A Brown; Juergen Ripperger; Ueli Schibler
Journal:  Chromosoma       Date:  2004-08-03       Impact factor: 4.316

7.  FBXL21 regulates oscillation of the circadian clock through ubiquitination and stabilization of cryptochromes.

Authors:  Arisa Hirano; Kanae Yumimoto; Ryosuke Tsunematsu; Masaki Matsumoto; Masaaki Oyama; Hiroko Kozuka-Hata; Tomoki Nakagawa; Darin Lanjakornsiripan; Keiichi I Nakayama; Yoshitaka Fukada
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

Review 8.  Circadian photoreception in humans and mice.

Authors:  Ibrahim Halil Kavakli; Aziz Sancar
Journal:  Mol Interv       Date:  2002-12

Review 9.  Transcriptional architecture of the mammalian circadian clock.

Authors:  Joseph S Takahashi
Journal:  Nat Rev Genet       Date:  2016-12-19       Impact factor: 53.242

10.  Competing E3 ubiquitin ligases govern circadian periodicity by degradation of CRY in nucleus and cytoplasm.

Authors:  Seung-Hee Yoo; Jennifer A Mohawk; Sandra M Siepka; Yongli Shan; Seong Kwon Huh; Hee-Kyung Hong; Izabela Kornblum; Vivek Kumar; Nobuya Koike; Ming Xu; Justin Nussbaum; Xinran Liu; Zheng Chen; Zhijian J Chen; Carla B Green; Joseph S Takahashi
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

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