| Literature DB >> 35609928 |
Patricia E Lee1, Robert Kozak2, Nasrin Alavi2, Hamza Mbareche2, Rose C Kung2, Kellie E Murphy2, Darian Perruzza2, Stephanie Jarvi2, Elsa Salvant2, Noor Niyar N Ladhani2, Albert J M Yee2, Louise-Helene Gagnon2, Richard Jenkinson2, Grace Y Liu2.
Abstract
BACKGROUND: The exposure risks to front-line health care workers caring for patients with SARS-CoV-2 infection undergoing surgery or obstetric delivery are unclear, and an understanding of sample types that may harbour virus is important for evaluating risk. We sought to determine whether SARS-CoV-2 viral RNA from patients with SARS-CoV-2 infection undergoing surgery or obstetric delivery was present in the peritoneal cavity of male and female patients, in the female reproductive tract, in the environment of the surgery or delivery suite (surgical instruments or equipment used, air or floors), and inside the masks of the attending health care workers.Entities:
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Year: 2022 PMID: 35609928 PMCID: PMC9259417 DOI: 10.9778/cmajo.20210321
Source DB: PubMed Journal: CMAJ Open ISSN: 2291-0026
Patient and case characteristics with results of samples taken*
| ID no. | Age range, | Sex | No. of days from first SARS-CoV-2 positive test to surgery (repeat test) | Procedure performed | VOC | Ct value of NP swab | Positive | Negative |
|---|---|---|---|---|---|---|---|---|
| 1 | 30–39 | F | 3 | Cesarean delivery (spinal anesthesia) | Not tested | NA | None |
Peritoneal fluid, placenta, myometrium Floor 3 HCW masks |
| 2 | 30–39 | F | 4 | Cesarean delivery (spinal anesthesia) | Not tested | NA | None |
Peritoneal fluid, placenta, myometrium Floor 3 HCW masks |
| 3 | 40–49 | F | 3 | Cesarean delivery (spinal anesthesia) | Not tested | 30.89 | Placenta (25.9) |
Vaginal fluid Patient mask Floor 5 HCW masks |
| 4 | 20–29 | F | 30 (24) | Cesarean delivery (intubation and extubation) | Alpha | 18.69 | ETT (25.66) |
Peritoneal fluid, placenta, myometrium Floor 6 HCW masks |
| 5 | 20–29 | F | 14 (0) | Cesarean delivery (spinal anesthesia) | No VOC | 34.29 | None |
Peritoneal fluid, placenta 4 HCW masks |
| 6 | 30–39 | F | 3 | Cesarean delivery | Alpha | 24.41 |
Vaginal fluid (23.45) Peritoneal fluid (25.1) Myometrium (28.34) |
Floor 3 HCW masks |
| 7 | 30–39 | F | 1 | Vaginal delivery | Not tested | 31.31 | None |
Vaginal fluid Patient mask Floor 3 HCW masks |
| 8 | 30–39 | F | 0 | Vaginal delivery | Not tested | 18.87 | None |
Vaginal fluid, placenta Floor 1 HCW mask |
| 9 | 30–39 | F | 14 (0) | Vaginal (vacuum) delivery | Alpha | 14.81 | None |
Vaginal fluid Placenta Integrated visor of mask (obstetrician) 6 HCW masks |
| 10 | 50–59 | F | 1 | TAHBSO, node dissection (intubation and extubation) | Not tested | 32.17 | None |
ETT Floor 5 HCW masks |
| 11 | 40–49 | F | 16 | TAHBSO, | Alpha | 11.86 |
ETT (25.37) Surgical clamps, scissors (27.13) Floor at 2 m (28.94) |
Floor near the OR table 6 HCW masks |
| 12 | 80–89 | F | 4 | Left hip hemiarthroplasty (spinal anesthesia) | Not tested | 21.44 | None |
Saw blade Floor 1 HCW mask |
| 13 | 30–39 | F | 2 | Bilateral tibial fracture (spinal anesthesia) | Not tested | NA | None |
Drill bit Floor 5 HCW masks |
| 14 | 50–59 | M | 22 (3) | T10–T12 spinal decompression (arrived in OR intubated and left intubated) | Not tested | 29.17 | ETT (22.27) |
Floor 6 HCW masks |
| 15 | 70–79 | M | 2 (0) | ORIF cervical spine fracture (arrived in OR intubated and left intubated) | Not tested | NA | None |
Petri dish UTM (passive air sampling) Floor 5 HCW masks |
| 16 | 60–69 | F | 4(2) | ORIF ankle, fibula (arrived in OR intubated and left intubated) | Alpha | 32.35 | None |
Scalpel blade and clamps Petri dish UTM Floor 5 HCW masks |
| 17 | 50–59 | M | 2 | Humerus fracture (came to OR intubated and left OR intubated) | No VOC | 13.45 | Floor (21.97) |
Scissors and clamps Petri dish UTM 5 HCW masks |
| 18 | 70–79 | M | 26 (5) | Superficial and deep compartment irrigation of leg and débridement (arrived in OR intubated and left OR intubated) | Alpha | 37.25 | None |
Scalpel blade, scissors and clamps Petri dish UTM Floor 4 HCW masks |
| 19 | 50–59 | M | 1 | Laparotomy (came to OR intubated and left intubated) | Not tested | 32.7 | None |
Peritoneal fluid Floor Face shield (surgeon) 4 HCW masks |
| 20 | 50–59 | F | 15 | Bilateral mastectomy (intubation and extubation) | Not tested | NA | None |
ETT Floor 5 HCW masks |
| 21 | 70–79 | M | 70 (3) | Tracheostomy | Not tested | NA | ETT (21.74) |
Floor 5 HCW masks |
| 22 | 60–69 | M | 50 (5) | Tracheostomy | Alpha | NA | None |
ETT Floor 5 HCW masks |
| 23 | 60–69 | M | 54 (16) | Tracheostomy | No VOC | NA |
ETT (22.53) Floor (28.19) |
Floor at 2 m 4 HCW masks |
| 24 | 70–79 | F | 62 (2) | Tracheostomy, gastroscopy, insertion of gastrostomy tube | No VOC | 32.94 |
ETT (20.7) Floor (20.9) |
Clamps and scissors Petri dish UTM 5 HCW masks |
| 25 | 70–79 | M | 4 | Gastroduodenoscopy | Alpha | 18.62 | Gastroscope (30.56) |
Petri dish UTM Floor 3 HCW masks |
| 26 | 60–69 | F | 2 | Burn reconstruction (intubation and extubation) | Not tested | NA | ETT (24.88) |
Floor Face shield (surgeon) 7 HCW masks |
| 27 | 70–79 | M | 2 | Débridement, graft lower abdomen, thighs (intubation and extubation) | Beta/ Gamma | 26.69 |
ETT (24.32) Floor (24.97) Petri dish UTM (28.4) |
Scalpel blade, scissors and clamps 4 HCW masks |
| 28 | 20–29 | M | 2 | Hand surgery (regional block) | Not tested | 35.29 | None |
Floor 5 HCW masks |
| 29 | 60–69 | F | 1 | Débridement and graft (arrived in OR intubated and left intubated) | Alpha | 36.01 | None |
Dermatome Floor 6 HCW masks |
| 30 | 60–69 | M | 14 | Aortic valve replacement (intubated in OR and left OR intubated) | No VOC | 32.98 | None |
Thoracic retractor Floor 6 HCW masks |
| 31 | 70–79 | M | 2 | Carotid endarterectomy (intubation and extubation) | Not tested | NA | None |
ETT Floor Face shield (surgeon) 4 HCW masks |
| 32 | 40–49 | M | 0 | Decompressive craniotomy (arrived in OR intubated and left intubated) | Not tested | NA | None |
Floor 4 HCW masks |
Note: Alpha = Alpha variant (United Kingdom, B.1.1.7); Beta/Gamma = Beta or Gamma variant (South African, B.1.351; or Brazilian, P.1); CI = confidence interval; Ct = cycle threshold: the number of cycles required for the fluorescent signal to cross the threshold in RT-PCR (a lower Ct would indicate a higher viral load); ETT = endotracheal tube; F = female; GI = gastrointestinal; HCW = health care worker; M = male; NA = not available; NP = nasopharyngeal; OB = obstetrics; OR = operating room; ORIF = open reduction internal fixation; RT-PCR = reverse transcription polymerase chain reaction; TAHBSO = total abdominal hysterectomy bilateral salpingo-oophorectomy; UTM = universal transport medium; VOC = variant of concern.
See Appendix 4 (available at www.cmajopen.ca/content/10/2/E450/suppl/DC1) for more detail including active air sampling times.
Age range used to preserve anonymity.
The mean Ct value of the initial patient NP swab was 21.72 (95% CI 16.90–27.29) and 29.96 (95% CI 27.07–33.43), respectively, in the group of patients that had positive samples (evidence of SARS-CoV-2 RNA) and the group that had all samples negative (Mann–Whitney U test, p = 0.007).
The mean Ct value of the initial patient NP swab was 24.52 (95% CI 18.72–30.99) and 28.41 (95% CI 25.35–30.33), respectively, in the group of patients that had known VOC and the group that included known non-VOC and unknown or untested status (Mann–Whitney U test, p = 0.5).
Positive samples refer to the samples collected (patient, instrument, equipment, surface, air and mask) that had the presence of SARS-CoV-2 RNA detected on real-time RT-PCR.
Negative samples refer to the samples collected (patient, instrument, equipment, surface, air and mask) that did not have the presence of SARS-CoV-2 RNA detected on real-time RT-PCR.
A variety of masks were used by health care workers in our cohort, including American Society for Testing and Materials (ASTM) level 3 masks, N95 masks, double masks (inner mask sampled) or masks worn under face shields. Of 143 masks: 51 from nurses, 31 from anesthetists, 32 from surgeons and 29 from surgical house staff.
Figure 1:Time from a positive SARS-CoV-2 test to the patient’s surgical or delivery date.
Positive tests for SARS-CoV-2 RNA*
| Surgical service; no. of cases | Peritoneal fluid | Vaginal fluid | Myometrial swab | Placenta swab | Surgical instruments | ETT | Petri dish UTM (passive air sampling) | Floor swab |
|---|---|---|---|---|---|---|---|---|
| Obstetrics, | 1/5 | 1/7 | 1/4 | 1/7 | – | 1/1 | – | 0/14 |
| Gynecologic oncology, | – | NA | NA | NA | 1/1 | 1/2 | – | 1/4 |
| Orthopedics or trauma, | NA | NA | NA | NA | 0/5 | 1/1 | 0/4 | 1/14 |
| General surgery, | 0/1 | NA | NA | NA | – | 0/1 | – | 0/4 |
| Tracheostomy, | NA | NA | NA | NA | 0/1 | 3/4 | 0/1 | 2/8 |
| Gastroenterology, | NA | NA | NA | NA | 1/1 | – | 0/1 | 0/2 |
| Burn or plastic surgery, | NA | NA | NA | NA | 0/2 | 2/2 | 1/1 | 1/8 |
| Cardiac or vascular surgery, | NA | NA | NA | NA | 0/1 | 0/1 | – | 0/4 |
| Neurosurgery, | NA | NA | NA | NA | – | – | – | 0/2 |
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Note: ETT = endotracheal tube, NA = not applicable, UTM = universal transport medium, – = (empty cell), sample was either not taken or patient consent was not possible.
See Appendix 4 (available at www.cmajopen.ca/content/10/2/E450/suppl/DC1) for all results of tests that include cautery filters, active air sampling and face masks.
Number of positive tests/number of cases sampled.
Number of positive tests/number of tests performed (e.g., 1–2 tests per surgical or obstetric case).