| Literature DB >> 35602340 |
Yuanlin Wang1,2, Yiming Jia2,3, Yujing Xu4, Xingkun Liu5, Zheng Wang1,2, Yang Liu1,2, Bing Li1, Jun Liu1,2.
Abstract
Disused osteoporosis is a kind of osteoporosis, a common age-related disease. Neurological disorders are major risk factors for osteoporosis. Though there are many studies on disuse osteoporosis, the genetic mechanisms for the association between glutathione metabolism and ferroptosis in osteoblasts with disuse osteoporosis are still unclear. The purpose of this study is to explore the key genes and other related mechanism of ferroptosis and glutathione metabolism in osteoblast differentiation and disuse osteoporosis. By weighted gene coexpression network analysis (WGCNA), the process of osteoblast differentiation-related genes was studied in GSE30393. And the related functional pathways were found through the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. By combining GSE1367 and GSE100933 together, key genes which were separately bound up with glutathione metabolism and ferroptosis were located. The correlation of these key genes was analyzed by the Pearson correlation coefficient. GSTM1 targeted agonist glutathione (GSH) selected by connectivity map (CMap) analysis was used to interfere with the molding disused osteoporosis process in MC3T3-E1 cells. RT-PCR and intracellular reactive oxygen species (ROS) were performed. Two important pathways, glutathione metabolism and ferroptosis pathways, were found. GSTM1 and TFRC were thought as key genes in disuse osteoporosis osteoblasts with the two mechanisms. The two genes have a strong negative correlation. Our experiment results showed that the expression of TFRC was consistent with the negative correlation with the activation process of GSTM1. The strong relationship between the two genes was proved. Glutathione metabolism and ferroptosis are important in the normal differentiation of osteoblasts and the process of disuse osteoporosis. GSTM1 and TFRC were the key genes. The two genes interact with each other, which can be seen as a bridge between the two pathways. The two genes participate in the process of reducing ROS in disuse osteoporosis osteoblasts.Entities:
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Year: 2022 PMID: 35602340 PMCID: PMC9119747 DOI: 10.1155/2022/4914727
Source DB: PubMed Journal: Comput Math Methods Med ISSN: 1748-670X Impact factor: 2.809
Figure 1Flow diagram shows the whole process of data collection, analysis, and cytological experiment.
Figure 2(a) Network topology analysis of adjacency matrix under different soft thresholds. The soft thresholding power was marked clearly in red with a corresponding square value of correlation coefficient marked on the y axis. (b) Dendrogram on gene clustering and module allocation. (c) When scale-free topology is set to β = 9, the gene set with corresponding log10 and log10 P values. (d) Significant modules associated with the clinical traits (days and differential stages). Each cell in the chart shows a correlation with the trait. Red represents positive correlation, and green represents negative correlation.
Figure 3(a) The relationship of GS and MM calculated in the DEGs from significant modules. Taking 0.8 as the boundary, the genes particularly related to the differentiation stage were segmented by lines. (b) KEGG pathway analysis of significant module genes. The size of the dot stands for the number of genes included in the pathway, and the color represents the P value.
Figure 4(a, c) The volcano plot of DEGs in GSE1367 and GSE100933. The red nodes indicate the upregulated DEGs. The green nodes indicate the downregulated DEGs. (b, d) The heatmap of the top 50 DEGs. The expression levels of the top 50 DEGs in microgravity and healthy controls are shown contained in two datasets. Blue indicates low expression, and red indicates high expression. (e) KEGG pathway analysis of GSE100933 DEGs. Dots of different colors represent different pathways. The line represents connections between pathways. (f) Common genes of DEGs from two datasets related with ferroptosis. The green area represents GSE1367. The pink area represents GSE100933. The blue area represents ferroptosis-related genes.
Ferroptosis- and glutathione metabolism-related genes.
| Group | Ferroptosis | Glutathione metabolism |
|---|---|---|
| GSE100933 | HSPB1, TRIB3, GOT1, LONP1, ACSL3, PLIN2, SCP2, RGS4, MT3, ACSF2, EIF2S1, PTGS2, GCH1, ENPP2, SLC7A11, TNFAIP3, GCLC, SLC2A1, SLC2A14, CXCL2, G6PD, MTDH, SLC3A2, RB1, LURAP1L, HILPDA, SAT1 PANX1, ATF3, CHMP5, SLC40A1, AKR1C2, SCD, CAPG, DUSP1, TGFBR1, NOX4, ACO1, GABARAPL1, CISD2, ATG13, GABPB1, TFRC, ARNTL, TXNIP, IL6, TUBE1, DDIT4, HERPUD1, SLC7A5, AIFM2, NQO1, DDIT3, HSPA5, WIPI1, RRM2, CAV1, CEBPG, MAPK3, ASNS, XBP1, SLC38A1, AKR1C3, JUN, SESN2, PGD, TP63 | GCLM, GSTM4, TXNDC12, GCLC, GSTM1, ODC1, GSTM2, GSTA4 GSTT2, GSTK1, RRM2, GSTO1, PG,D |
| GSE1367 | PLIN4, IDH1, ENPP2, TFRC, HNF4A | GSTM1, GSTT1, GGT5, IDH1 |
| Common genes | TFRC, ENPP2 | GSTM1 |
Figure 5(a) The PPI network of ferroptosis-related DEGs in GSE100933. The red represents upregulated, and orange represents downregulated. (b) The PPI network of ferroptosis-related DEGs in GSE100933. (c) Common genes of DEGs related with the glutathione metabolism pathway. The green area represents GSE1367. The pink area represents GSE100933. The blue area represents glutathione-related genes. (d) The Pearson correlation analysis of GSTM1 and TFRC in two disused datasets. The value of X axis represents the expression of TFRC. The value of Y axis represents the expression of GSTM1.
The results of CMap analysis.
| Compound | Molecular structure | Mechanism of action | Targeted genes |
|---|---|---|---|
| Glutathione |
| Antioxidant | GSTM1 |
Figure 6(a) Confocal photos of intracellular ROS detection. The green fluorescence is the intracellular oxidative stress product labeled by the probe. (b) Comparison of normal and modeled cells under optical microscope. (c) Relative mRNA expression in of TFRC and GSTM1 in the normal group (n = 5) and glutathione intervention group (n = 5). ∗P < 0.05, ∗∗P < 0.01.