| Literature DB >> 27463808 |
Anne Camirand1, David Goltzman1, Ajay Gupta2, Mohammadi Kaouass3, Dibyendu Panda4, Andrew Karaplis4.
Abstract
Prolonged skeletal unloading through bedrest results in bone loss similar to that observed in elderly osteoporotic patients, but with an accelerated timeframe. This rapid effect on weight-bearing bones is also observed in astronauts who can lose up to 2% of their bone mass per month spent in Space. Despite the important implications for Spaceflight travelers and bedridden patients, the exact mechanisms involved in disuse osteoporosis have not been elucidated. Parathyroid hormone-related protein (PTHrP) regulates many physiological processes including skeletal development, and has been proposed as a mechanosensor. To investigate the role of PTHrP in microgravity-induced bone loss, trabecular and calvarial osteoblasts (TOs and COs) from Pthrp +/+ and -/- mice were subjected to actual Spaceflight for 6 days (Foton M3 satellite). Pthrp +/+, +/- and -/- osteoblasts were also exposed to simulated microgravity for periods varying from 6 days to 6 weeks. While COs displayed little change in viability in 0g, viability of all TOs rapidly decreased in inverse proportion to PTHrP expression levels. Furthermore, Pthrp+/+ TOs displayed a sharp viability decline after 2 weeks at 0g. Microarray analysis of Pthrp+/+ TOs after 6 days in simulated 0g revealed expression changes in genes encoding prolactins, apoptosis/survival molecules, bone metabolism and extra-cellular matrix composition proteins, chemokines, insulin-like growth factor family members and Wnt-related signalling molecules. 88% of 0g-induced expression changes in Pthrp+/+ cells overlapped those caused by Pthrp ablation in normal gravity, and pulsatile treatment with PTHrP1-36 not only reversed a large proportion of 0g-induced effects in Pthrp+/+ TOs but maintained viability over 6-week exposure to microgravity. Our results confirm PTHrP efficacy as an anabolic agent to prevent microgravity-induced cell death in TOs.Entities:
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Year: 2016 PMID: 27463808 PMCID: PMC4963112 DOI: 10.1371/journal.pone.0160034
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Endogenous PTHrP protects trabecular osteoblasts from Space microgravity-induced apoptosis. (6-day experiments).
(A) Automated flight-ready tray for conducting cell culture experiments aboard Foton M3 satellite. Osteoblasts were attached onto CC2 culture slides inside three bioreactors (lower right) in a sealed pathway. (B) Proportion of apoptotic cells in trabecular osteoblasts in bioreactors after 6 days in Space microgravity (0g) or in normal Earth gravity (1g). ** p < 0.01. White bars: untreated; black bars: 2-h daily treatment with PTHrP1-36 10-8M. (C) Proportion of apoptotic cells in calvarial osteoblasts in bioreactors after 6 days in Space microgravity (0g) or in normal Earth gravity (1g). No PTHrP1-36 treatment was conducted on calvarial cells. Scale bar A: 15 cm.
Fig 2Allelic effect of endogenous PTHrP levels in simulated microgravity, and compensation by exogenous PTHrP 1–36 (6-day experiments).
(A) Microgravity simulation apparatus (RCCS) with one rotating culture unit (HARV). (B) MicroHex carriers with attached trabecular osteoblasts in culture. (C) Cell-induced MicroHex aggregate in culture (occurs for both trabecular and calvarial osteoblasts). (D) Trabecular osteoblast viability after 6 days on MicroHex carriers in normal gravity (1g) or in simulated microgravity (0g) (triplicate 6-day experiments). White bars: untreated; black bars: 2-h daily treatment with PTHrP1-36 10-8M. ** p < 0.01, *** p < 0.001. Scale bars: B, C: 200 μm.
Fig 3Long-term exposure to simulated microgravity is detrimental to wild-type trabecular osteoblasts but compensated for by exogenous intermittent PTHrP1-36 treatment.
Pthrp trabecular osteoblasts at 1g (■) or 0g (▼). Pthrp trabecular osteoblasts treated with PTHrP1-36 10-8M.at 1g (▲) or 0g (♦). (triplicate 6-week experiments). Viability estimated by Trypan blue. ** p < 0.01, *** p < 0.001.
Fig 4Long-term exposure to simulated microgravity has little negative effect on calvarial osteoblasts.
Phtrp calvarial osteoblasts at 1g (▼) or 0g (■). Pthrp calvarial osteoblasts at 1g (●) or 0g (▲). (triplicate 6-week experiments). No exogenous PTHrP1-36 treatment was applied in this experiment. Viability estimated by Trypan blue. * p < 0.05, ** p < 0.01.
Fig 5Venn diagrams illustrating the number of trabecular osteoblast genes significantly up- or downregulated by microgravity exposure (6 days) or by Pthrp ablation, and reversed by PTHrP1-36 treatment.
(A) 52 genes are upregulated by both 0g (yellow) and Pthrp ablation (blue). Fold change > 2.0, p < 0.05. (B) 115 genes are downregulated by both 0g (yellow) and Pthrp ablation (blue). Fold change < 0.5, p < 0.05. (C) 24 genes are upregulated by both 0g (yellow) and Pthrp ablation (blue), and are also downregulated (central intersect) by PTHrP1-36 treatment (red). Fold change < 0.65, p < 0.05. (D) 50 genes are downregulated by both 0g (yellow) and Pthrp ablation (blue), and upregulated (central intersect) by PTHrP1-36 treatment (red). Fold change >1.5, p < 0.05.
Genes (52) upregulated by both microgravity and Pthrp ablation.
| Target ID | Definition (all probes: | RefSeq ID | Fold change 0g | Fold change ablation | C |
|---|---|---|---|---|---|
| PLF2 | prolactin family 2, subfamily c, member 3 (Prl2c3), mRNA. | NM_011118.1 | 12.81098 | 20.67081 | P |
| MRPPLF3 | prolactin family 2, subfamily c, member 4 (Prl2c4), mRNA. | NM_011954.2 | 11.76853 | 19.04649 | P |
| AQP5 | aquaporin 5 (Aqp5), mRNA.PREDICTED: similar to aquaporin 5 (LOC100046616), mRNA. | NM_009701.4XM_001476512.1 | 7.7909763.627969 | 25.586929.547247 | A |
| GREM1 | gremlin1 (Grem1) mRNA. | NM_011824.1 | 4.151464 | 5.17375 | B |
| GPC1 | glypican 1 (Gpc1), mRNA. | NM_016696.3 | 4.13393 | 4.008327 | W |
| ALDH3A1 | aldehyde dehydrogenase family 3, subfamily A1 (Aldh3a1), mRNA. | NM_007436.1 | 3.821048 | 2.733907 | |
| ASS1 | argininosuccinate synthetase 1 (Ass1), mRNA. | NM_007494.3 | 3.663361 | 2.781254 | |
| NKD2 | naked cuticle 2 homolog (Drosophila) (Nkd2), mRNA. | NM_028186.3 | 3.63063 | 9.964373 | W |
| NQO1 | NAD(P)H dehydrogenase, quinone 1 (Nqo1), mRNA. | NM_008706.4 | 3.439677 | 9.410905 | |
| INHBA | inhibin beta-A (Inhba), mRNA. | NM_008380.1 | 3.374437 | 6.03861 | B |
| HIST1H4H | histone cluster 1, H4h (Hist1h4h), mRNA. | NM_153173.2 | 3.122563 | 6.525515 | H |
| HSPB1 | heat shock protein 1 (Hspb1), mRNA. | NM_013560.1 | 2.937195 | 3.686913 | HS |
| CRIP2 | cysteine rich protein 2 (Crip2), mRNA. | NM_024223.1 | 2.87678 | 4.260978 | |
| TIMP3 | tissue inhibitor of metalloproteinase 3 (Timp3), mRNA | NM_011595.2NM_011595.2 | 2.8337662.168426 | 4.7180244.573879 | E |
| ESD | esterase D/formylglutathione hydrolase (Esd), mRNA. | NM_016903.2 | 2.617979 | 4.782361 | |
| PRELP | proline arginine-rich end leucine-rich repeat (Prelp), mRNA. | NM_054077.3 | 2.563206 | 2.682429 | E |
| 1110032E23RIK | RIKEN cDNA 1110032E23 gene (1110032E23Rik), mRNA | NM_133187.2 | 2.532211 | 5.501027 | |
| GDF15 | growth differentiation factor 15 (Gdf15), mRNA. | NM_011819.1 | 2.506674 | 2.841855 | T |
| AHRR | aryl-hydrocarbon receptor repressor (Ahrr), mRNA. | NM_009644.2 | 2.366026 | 2.51242 | |
| NBL1 | neuroblastoma, suppression of tumorigenicity 1 (Nbl1), mRNA. | NM_008675.1 | 2.362421 | 2.214473 | B |
| CRYAB | crystallin, alpha B (Cryab), mRNA. | NM_009964.1 | 2.332638 | 5.135748 | B |
| FABP3 | fatty acid binding protein 3, muscle and heart (Fabp3), mRNA. | NM_010174.1 | 2.32906 | 7.70136 | |
| MDM2 | transformed mouse 3T3 cell double minute 2 (Mdm2), mRNA. | NM_010786.2NM_010786.3 | 2.318342.246531 | 2.8090142.71183 | |
| KCTD10 | potassium channel tetramerisation domain containing 10 (Kctd10), mRNA. | NM_026145.3 | 2.279135 | 2.72172 | IC |
| SGK | serum/glucocorticoid regulated kinase 1 (Sgk1), mRNA. | NM_011361.1 | 2.240079 | 2.362139 | |
| ANK | progressive ankylosis (Ank), mRNA. | NM_020332.3 | 2.228785 | 9.115022 | B |
| EPHX1 | epoxide hydrolase 1, microsomal (Ephx1), mRNA. | NM_010145.2 | 2.215451 | 2.907278 | |
| WHRN | whirlin (Whrn), transcript variant 3, mRNA. | NM_001008792.1 | 2.202689 | 2.327795 | |
| CD44 | CD44 antigen (Cd44), transcript variant 2, mRNA. | NM_001039150.1 | 2.195092 | 4.927895 | B |
| CTGF | connective tissue growth factor (Ctgf), mRNA. | NM_010217.1 | 2.193812 | 3.29075 | E |
| SCX | scleraxis (Scx), mRNA. | NM_198885.2 | 2.185468 | 4.251521 | B |
| MUSTN1 | musculoskeletal, embryonic nuclear protein 1 (Mustn1), mRNA. | NM_181390.1NM_181390.2 | 2.1853642.109783 | 3.9570883.099647 | B |
| HIST1H2BJ | histone cluster 1, H2bj (Hist1h2bj), mRNA. | NM_178198.1 | 2.173656 | 2.755197 | H |
| EEF1A2 | eukaryotic translation elongation factor 1 alpha 2 (Eef1a2), mRNA. | NM_007906.2 | 2.153269 | 2.293173 | A |
| TNFRSF11B | tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) (Tnfrsf11b), mRNA. | NM_008764.3 | 2.129809 | 9.058214 | B |
| HOXC6 | homeo box C6 (Hoxc6), mRNA. | NM_010465.2 | 2.107019 | 2.215212 | |
| 2300002D11RIK | RIKEN cDNA 2300002D11 gene (2300002D11Rik), mRNA. | NM_001081156.1 | 2.097322 | 4.2774 | |
| BDNF | brain derived neurotrophic factor (Bdnf), transcript variant 3, mRNA. | NM_001048141.1 | 2.091327 | 7.461118 | B |
| HSPB8 | heat shock protein 8 (Hspb8), mRNA. | NM_030704.1 | 2.090601 | 2.42948 | H |
| PDGFA | platelet-derived growth factor, alpha chain (Pdgfa) mRNA. | 2.084386 | 2.631637 | PD | |
| CCNG1 | cyclin G1 (Ccng1), mRNA. | NM_009831.2 | 2.083259 | 3.109058 | CC |
| HIST1H2BM | histone cluster 1, H2bm (Hist1h2bm), mRNA. | NM_178200.1 | 2.072647 | 2.824912 | H |
| HIST1H2BH | histone cluster 1, H2bh (Hist1h2bh), mRNA. | NM_178197.1 | 2.069317 | 2.693571 | H |
| HIST1H2BF | histone cluster 1, H2bf (Hist1h2bf), mRNA. | NM_178195.1 | 2.066524 | 2.55937 | H |
| COL7A1 | collagen, type VII, alpha 1 (Col7a1), mRNA. | NM_007738.3 | 2.044317 | 3.129226 | E |
| A630005A06RIK | TBC1 domain family, member 2 (Tbc1d2), mRNA. | NM_198664.3 | 2.044002 | 3.518042 | |
| GSTP1 | glutathione S-transferase, pi 1 (Gstp1), mRNA. | NM_013541.1 | 2.039079 | 2.672256 | |
| TNFRSF12A | tumor necrosis factor receptor superfamily, member 12a (Tnfrsf12a), mRNA. | NM_013749.1 | 2.026671 | 3.449432 | |
| SNRPN | SNRPN upstream reading frame (Snurf), mRNA. | NM_033174.2 | 2.014161 | 3.736806 | |
| HIST1H2BK | histone cluster 1, H2bk (Hist1h2bk), mRNA. | NM_175665.1 | 2.012974 | 2.669902 | H |
| STMN2 | stathmin-like 2 (Stmn2), mRNA. | NM_025285.2 | 2.007183 | 3.763786 | B |
| DOS | downstream of Stk11 (Dos), mRNA. | NM_015761.2 | 2.00261 | 3.474366 |
Genes (52) upregulated by both microgravity and Pthrp ablation. All fold changes > 2. All p values < 0.05. Multiple entries for a gene indicate multiple probes. C: Clustering: A: apoptosis/survival, B: bone metabolism and bone morphogenic proteins, CC: cell cycle, E: extracellular matrix, H: histone, HS: heat shock, IC: ion channel, P: prolactins, PD: Platelet-derived growth factor, T: tumor growth factor, W: Wnt.
Genes (115) downregulated by both microgravity and Pthrp ablation.
| Target ID | Definition (all probes: | RefSeq ID | Fold change 0g | Fold change ablation | C |
|---|---|---|---|---|---|
| SFRP2 | secreted frizzled-related protein 2 (Sfrp2), mRNA. | NM_009144.1 | 0.1316429 | 0.096523 | W |
| PTN | pleiotrophin (Ptn), mRNA. | NM_008973.2 | 0.1557338 | 0.047141 | B |
| IGFBP5 | insulin-like growth factor binding protein 5 (Igfbp5), mRNA. | NM_010518.2 | 0.1603545 | 0.2130594 | I |
| 1500015O10RIK | RIKEN cDNA 1500015O10 gene (1500015O10Rik), mRNA. | NM_024283.2 | 0.1804316 | 0.0975587 | |
| IGF2 | insulin-like growth factor 2 (Igf2), mRNA. | NM_010514.2 | 0.2085582 | 0.026108 | I |
| CLU | PREDICTED: similar to clusterin (LOC100046120), mRNA. | XM_001475611.1 | 0.213665 | 0.47421 | A |
| CXCL12 | chemokine (C-X-C motif) ligand 12 (Cxcl12), transcript variant 3, mRNA. | NM_013655.2NM_021704.2NM_001012477.1 | 0.21502010.22348560.236011 | 0.28323790.40775260.3778157 | CH |
| HP | haptoglobin (Hp), mRNA. | NM_017370.1NM_017370.1 | 0.22221020.4034571 | 0.18333460.4167181 | B |
| C3 | complement 3 (C3) mRNA. | NM_009778.1 | 0.2325967 | 0.1254136 | |
| SCARA5 | scavenger receptor class A, member 5 (putative) (Scara5), mRNA. | NM_028903.1 | 0.2351416 | 0.1405516 | B |
| LUM | lumican (Lum), mRNA. | NM_008524.1 | 0.235224 | 0.0573447 | E |
| MRC1 | mannose receptor, C type 1 (Mrc1), mRNA. | NM_008625.1 | 0.253038 | 0.0815048 | |
| 4930583H14RIK | RIKEN cDNA 4930583H14 gene (4930583H14Rik), mRNA. | NM_026358.2 | 0.2575598 | 0.1684547 | |
| 2310061N23RIK | interferon, alpha-inducible protein 27 (Ifi27), mRNA. | NM_029803.1 | 0.2600992 | 0.0590283 | |
| DCN | decorin (Dcn), mRNA. | NM_007833.4NM_007833.4 | 0.28897940.3837174 | 0.06403410.0548521 | E |
| H19 | H19 fetal liver mRNA (H19), non-coding RNA. | NR_001592.1 | 0.2906019 | 0.0360464 | E |
| PPP1R3C | protein phosphatase 1, regulatory (inhibitor) subunit 3C (Ppp1r3c), mRNA. | NM_016854.2 | 0.2954025 | 0.1777717 | |
| RBM3 | PREDICTED: similar to RNA binding motif protein 3 (LOC100043257), mRNA. | XM_001480197.1 | 0.2991486 | 0.2378549 | A |
| APOD | PREDICTED: similar to apolipoprotein D (LOC100047583), mRNA. | XM_001479138.1 | 0.2996465 | 0.1742532 | A |
| ITM2A | integral membrane protein 2A (Itm2a), mRNA. | NM_008409.2 | 0.2997355 | 0.138948 | B |
| D930038M13RIK | ABI gene family, member 3 (NESH) binding protein (Abi3bp), transcript variant 1, mRNA. | NM_178790.3 | 0.3036303 | 0.2955018 | B |
| PFKL | phosphofructokinase, liver, B-type (Pfkl), mRNA. | NM_008826.3 | 0.3054363 | 0.2514627 | |
| OLFML1 | olfactomedin-like 1 (Olfml1), mRNA. | NM_172907.2 | 0.3123395 | 0.3050197 | |
| HIST1H2AD | histone cluster 1, H2ad (Hist1h2ad), mRNA. | NM_178188.3 | 0.3149356 | 0.0061305 | |
| DLK1 | delta-like 1 homolog (Drosophila) (Dlk1), mRNA. | NM_010052.4 | 0.3273854 | 0.1513731 | B |
| HIST1H2AK | histone cluster 1, H2ak (Hist1h2ak), mRNA. | NM_178183.1 | 0.3372404 | 0.0596174 | H |
| 2310056P07RIK | family with sequence similarity 162, member A (Fam162a), mRNA. | NM_027342.1 | 0.3391683 | 0.2567712 | |
| HIST1H2AF | histone cluster 1, H2af (Hist1h2af), mRNA. | NM_175661.1 | 0.3396376 | 0.067387 | H |
| SLC1A3 | solute carrier family 1 (glial high affinity glutamate transporter), member 3 (Slc1a3), mRNA. | NM_148938.2 | 0.3399492 | 0.1181837 | |
| PSCDBP | cytohesin 1 interacting protein (Cytip), mRNA. | NM_139200.4 | 0.3403133 | 0.1328767 | |
| NID2 | nidogen 2 (Nid2), mRNA. | NM_008695.2 | 0.3477556 | 0.3321977 | E |
| TGFBI | transforming growth factor, beta induced (Tgfbi), mRNA. | NM_009369.1 | 0.3514812 | 0.0792747 | T |
| HIST1H2AH | histone cluster 1, H2ah (Hist1h2ah), mRNA. | NM_175659.1 | 0.352093 | 0.0777217 | |
| FMO1 | flavin containing monooxygenase 1 (Fmo1), mRNA. | NM_010231.2 | 0.3568025 | 0.3366457 | |
| EGLN3 | EGL nine homolog 3 (C. elegans) (Egln3), mRNA. | NM_028133.1 | 0.3569504 | 0.3106277 | |
| DPEP2 | dipeptidase 2 (Dpep2), mRNA. | NM_176913.3 | 0.35774720.3965119 | 0.14003250.18665 | |
| COL3A1 | collagen, type III, alpha 1 (Col3a1), mRNA. | NM_009930.1 | 0.3599768 | 0.2207009 | E |
| 1200009O22RIK | RIKEN cDNA 1200009O22 gene (1200009O22Rik), mRNA. | NM_025817.3 | 0.3616481 | 0.3116025 | |
| HIST1H2AO | histone cluster 1, H2ao (Hist1h2ao), mRNA. | NM_178185.1 | 0.3618695 | 0.057145 | H |
| AGTR1A | angiotensin II receptor, type 1a (Agtr1a), mRNA. | NM_177322.2 | 0.3640873 | 0.3477361 | |
| LDB2 | LIM domain-binding protein 2 (Ldb2) mRNA. | NM_010698.2 | 0.3694307 | 0.2963222 | |
| DPT | dermatopontin (Dpt), mRNA. | NM_019759.2 | 0.369822 | 0.2973928 | E |
| 6330406I15RIK | RIKEN cDNA 6330406I15 gene (6330406I15Rik), mRNA. | NM_027519.1NM_027519.3 | 0.37182430.3991528 | 0.19828060.2041744 | |
| RASSF4 | Ras association (RalGDS/AF-6) domain family member 4 (Rassf4), mRNA. | NM_178045.3NM_178045.3 | 0.3723380.3845508 | 0.36712360.1214973 | |
| PDGFRA | platelet derived growth factor receptor, alpha polypeptide (Pdgfra), transcript variant 1, mRNA. | NM_011058.2 | 0.3755132 | 0.394926 | PD |
| HIST1H2AN | histone cluster 1, H2an (Hist1h2an), mRNA. | NM_178184.1 | 0.3776532 | 0.0945669 | H |
| ZCCH5 | Zinc finger, CCHC domain-containing 5 (Zcchc5), mRNA | NM_199468.2 | 0.3839341 | 0.4813192 | |
| IGFBP3 | insulin-like growth factor binding protein 3 (Igfbp3), mRNA. | NM_008343.2 | 0.3878084 | 0.3767934 | I |
| AOC3 | amine oxidase, copper containing 3 (Aoc3), mRNA. | NM_009675.1 | 0.390921 | 0.102008 | |
| KNG1 | kininogen 1 (Kng1), mRNA. | NM_023125.2 | 0.3914529 | 0.2682237 | |
| SERPING1 | serine (or cysteine) peptidase inhibitor, clade G, member 1 (Serping1), mRNA. | NM_009776.1 | 0.3939361 | 0.2493484 | |
| SFRP1 | secreted frizzled-related protein 1 (Sfrp1), mRNA. | NM_013834.1 | 0.3966504 | 0.1332278 | W |
| EMR1 | EGF-like module containing, mucin-like, hormone receptor-like sequence 1 (Emr1), mRNA. | NM_010130.3 | 0.4002873 | 0.0452258 | |
| SIRPB1 | signal-regulatory protein beta 1 (Sirpb1), transcript variant 3, mRNA. | NM_001002898.1 | 0.4006563 | 0.250706 | |
| CAR9 | carbonic anhydrase 9 (Car9), mRNA. | NM_139305.1 | 0.401926 | 0.3807879 | |
| SRPX | sushi-repeat-containing protein (Srpx), mRNA. | NM_016911.4NM_016911.4 | 0.40437110.4169736 | 0.12827860.1438187 | |
| LBP | lipopolysaccharide binding protein (Lbp), mRNA. | NM_008489.2 | 0.4046987 | 0.3596355 | |
| 2310006J04RIK | Ankyrin repeat domain 37 (Ankrd 37), mRNA | NM_001039562.1 | 0.4075139 | 0.4461992 | |
| CCR5 | chemokine (C-C motif) receptor 5 (Ccr5), mRNA. | NM_009917.2NM_009917.2NM_009917.4 | 0.40916990.44612370.4461237 | 0.31747080.32485210.3880605 | CH |
| RAMP2 | receptor (calcitonin) activity modifying protein 2 (Ramp2), mRNA. | NM_019444.2 | 0.4105468 | 0.2878545 | B |
| LSP1 | PREDICTED: predicted gene, ENSMUSG00000043795 (ENSMUSG00000043795), mRNA. | XM_001480835.1 | 0.4114556 | 0.1243922 | |
| CDKN1C | cyclin-dependent kinase inhibitor 1C (P57) (Cdkn1c), mRNA. | NM_009876.3 | 0.4116614 | 0.347614 | CC |
| CORO1A | coronin, actin binding protein 1A (Coro1a), mRNA. | NM_009898.2NM_009898.2NM_009898.2 | 0.41277540.44359450.4970813 | 0.08707340.05964910.1696803 | |
| C1QA | complement component 1, q subcomponent, alpha polypeptide (C1qa), mRNA. | NM_007572.2 | 0.4128893 | 0.1927809 | |
| SLC2A1 | solute carrier family 2 (facilitated glucose transporter), member 1 (Slc2a1), mRNA. | NM_011400.2 | 0.4167042 | 0.2991707 | |
| GPR23 | G protein-coupled receptor 23 (Gpr23), mRNA. | NM_175271.2 | 0.4254305 | 0.4447173 | |
| PDK1 | pyruvate dehydrogenase kinase, isoenzyme 1 (Pdk1), nuclear gene encoding mitochondrial protein, mRNA. | NM_172665.3 | 0.4255101 | 0.3667602 | |
| CTSC | cathepsin C (Ctsc), mRNA. | NM_009982.2 | 0.4265272 | 0.0758005 | E |
| OASL2 | 2'-5' oligoadenylate synthetase-like 2 (Oasl2), mRNA. | NM_011854.1 | 0.4272569 | 0.1159377 | |
| C1QB | complement component 1, q subcomponent, beta polypeptide (C1qb), mRNA. | NM_009777.2 | 0.4278048 | 0.0245339 | |
| DAB2 | disabled homolog 2 (Drosophila) (Dab2), transcript variant 2, mRNA. | NM_023118.1NM_001008702.1 | 0.42782040.4450885 | 0.17925610.1341114 | B |
| RSPO3 | R-spondin 3 homolog (Xenopus laevis) (Rspo3), mRNA. | NM_028351.2 | 0.4293909 | 0.2896171 | W |
| MFAP2 | microfibrillar-associated protein 2 (Mfap2), mRNA. | NM_008546.2NM_008546.2NM_008546.2 | 0.42967080.47591550.4945922 | 0.18086140.25899670.2757687 | B |
| GMFG | glia maturation factor, gamma (Gmfg), transcript variant 1, mRNA. | NM_022024.2NM_022024.2 | 0.43023620.4870403 | 0.203090.2355645 | |
| SELENBP1 | PREDICTED: hypothetical protein LOC100044204 (LOC100044204), mRNA. | XM_001471696.1 | 0.433163 | 0.2613255 | |
| MEST | mesoderm specific transcript (Mest), mRNA. | NM_008590.1NM_008590.1 | 0.43492520.4556044 | 0.31959320.3918639 | |
| NDRG1 | N-myc downstream regulated gene 1 (Ndrg1), mRNA. | NM_008681.2 | 0.4352534 | 0.3870171 | |
| MS4A6D | membrane-spanning 4-domains, subfamily A, member 6D (Ms4a6d), mRNA. | NM_026835.2 | 0.4373044 | 0.0358791 | |
| ALOX5AP | arachidonate 5-lipoxygenase activating protein (Alox5ap), mRNA. | NM_009663.1 | 0.4387523 | 0.0317102 | |
| HIST1H2AG | histone cluster 1, H2ag (Hist1h2ag), mRNA. | NM_178186.2 | 0.4395184 | 0.2645484 | H |
| 1300002F13RIK | ERBB receptor feedback inhibitor 1 (Errfi1), mRNA. | NM_133753.1 | 0.4395548 | 0.2132049 | |
| EVI2A | ecotropic viral integration site 2a (Evi2a), transcript variant 2, mRNA. | NM_010161.3 | 0.4402088 | 0.1280774 | |
| CXCL4 | chemokine (C-X-C motif) ligand 4 (Cxcl4), mRNA. | NM_019932.2 | 0.4419611 | 0.180652 | CH |
| 1190002H23RIK | RIKEN cDNA 1190002H23 gene (1190002H23Rik), mRNA. | NM_025427.2 | 0.4430251 | 0.3481645 | |
| ENO1 | enolase 1, alpha non-neuron (Eno1), mRNA. | NM_023119.1 | 0.4461543 | 0.4872021 | B |
| LYZ | lysozyme 1 (Lyz1), mRNA. | NM_013590.3 | 0.4473266 | 0.3851333 | |
| CD52 | CD52 antigen (Cd52), mRNA. | NM_013706.1 | 0.44963 | 0.0749331 | |
| NDRL | N-myc downstream gene 1 (Ndrl), mRNA. | 0.4504366 | 0.4056498 | ||
| CYP7B1 | cytochrome P450, family 7, subfamily b, polypeptide 1 (Cyp7b1), mRNA. | NM_007825.3 | 0.450876 | 0.1997939 | |
| PIRA4 | paired-Ig-like receptor A4 (Pira4), mRNA. | NM_011091.1 | 0.4527747 | 0.0263051 | |
| RARRES2 | retinoic acid receptor responder (tazarotene induced) 2 (Rarres2), mRNA. | NM_027852.1 | 0.4537163 | 0.3671236 | |
| CD14 | CD14 antigen (Cd14), mRNA. | NM_009841.3 | 0.4582975 | 0.1117494 | B |
| ALDH3B1 | aldehyde dehydrogenase 3 family, member B1 (Aldh3b1), mRNA. | NM_026316.2 | 0.4627661 | 0.3188771 | |
| KCNAB2 | potassium voltage-gated channel, shaker-related subfamily, beta member 2 (Kcnab2), mRNA. | NM_010598.2 | 0.4659567 | 0.1179869 | |
| C1QG | complement component 1, q subcomponent, C chain (C1qc), mRNA. | NM_007574.2 | 0.468035 | 0.3163972 | |
| GALNT9 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (Galnt9), mRNA. | NM_198306.1 | 0.4683551 | 0.3906375 | |
| ADD3 | adducin 3 (gamma) (Add3), mRNA. | NM_013758.2 | 0.4687887 | 0.306828 | |
| ZFP36L1 | zinc finger protein 36, C3H type-like 1 (Zfp36l1), mRNA. | NM_007564.4 | 0.4703194 | 0.2280471 | |
| HEMP1 | NCK associated protein 1 like (Nckap1l), mRNA. | NM_153505.4 | 0.4709411 | 0.0826084 | B |
| 2810046M22RIK | NM_026621.1 | 0.4778584 | 0.4976117 | ||
| LGMN | legumain (Lgmn), mRNA. | NM_011175.2 | 0.4770529 | 0.2286424 | B |
| TXNIP | thioredoxin interacting protein (Txnip), transcript variant 1, mRNA. | NM_001009935.2 | 0.4827267 | 0.3327381 | B |
| EHD4 | EH-domain containing 4 (Ehd4), mRNA. | NM_133838.4 | 0.483588 | 0.3327381 | E |
| EMR1 | EGF-like module containing, mucin-like, hormone receptor-like sequence 1 (Emr1), mRNA. | NM_010130.1 | 0.4839607 | 0.1299728 | |
| ARHGAP20 | Rho GTPase activating protein 20 (Arhgap20), mRNA. | NM_175535.3 | 0.4859805 | 0.4102931 | |
| PTX3 | pentaxin related gene (Ptx3) mRNA | NM_008987.2 | 0.4867727 | 0.1136763 | B |
| NCF4 | neutrophil cytosolic factor 4 (Ncf4), mRNA. | NM_008677.1 | 0.4881307 | 0.1080301 | |
| PFC | complement factor properdin (Cfp), mRNA. | NM_008823.3 | 0.488737 | 0.0720321 | |
| SMARCA1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (Smarca1), mRNA. | NM_053123.3 | 0.4911543 | 0.3176144 | |
| FCER1G | Fc receptor IgE high affinity 1 gamma polypeptide (Fcerg) mRNA. | NM_010185.2 | 0.4915371 | 0.0163625 | |
| CENPA | centromere protein A (Cenpa), mRNA. | NM_007681.2 | 0.4943203 | 0.0808812 | |
| 1200002N14RIK | RIKEN cDNA 1200002N14 gene (1200002N14Rik), mRNA. | NM_027878.2 | 0.4949315 | 0.207954 | |
| TK1 | thymidine kinase 1 (Tk1), mRNA. | NM_009387.1 | 0.4950169 | 0.1742371 | |
| ALDOA | aldolase A, fructose-bisphosphate (Aldoa), mRNA. | NM_007438.3 | 0.4959253 | 0.4941576 | |
| SLPI | secretory leukocyte peptidase inhibitor (Slpi), mRNA. | NM_011414.2 | 0.4988716 | 0.2429238 |
Genes (115) downregulated by both microgravity and Pthrp ablation. All fold changes < 0.5. All p values < 0.05. Multiple entries for a gene indicate multiple probes. C: Clustering: A: apoptosis/survival, B: bone metabolism and bone morphogenic proteins, CC: cell cycle, CH: chemokines, E: extracellular matrix, H: histone, I: Insulin-like growth factor, PD: Platelet-derived growth factor, T: tumor growth factor, W: Wnt.
Genes (24) upregulated by both Pthrp ablation and microgravity and downregulated by PTHrP1-36 treatment.
| Target ID | Definition (all probes: | RefSeqID | Fold change PTHrP 1–36 treatment | C |
|---|---|---|---|---|
| AQP5 | aquaporin 5 (Aqp5), mRNA.PREDICTED: similar to aquaporin 5 (LOC100046616), mRNA. | NM_009701.4XM_001476512.1 | 0.37050890.4987479 | A |
| TNFRSF11B | tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) (Tnfrsf11b), mRNA. | NM_008764.3 | 0.4687011 | B |
| HSPB1 | heat shock protein 1 (Hspb1), mRNA. | NM_013560.1 | 0.4871401 | HS |
| MRPPLF3 | prolactin family 2, subfamily c, member 4 (Prl2c4), mRNA. | NM_011954.2 | 0.5052176 | P |
| NKD2 | naked cuticle 2 homolog (Drosophila) (Nkd2), mRNA. | NM_028186.3 | 0.5150308 | W |
| PLF2 | prolactin family 2, subfamily c, member 3 (Prl2c3), mRNA. | NM_011118.1 | 0.5191368 | P |
| BDNF | brain derived neurotrophic factor (Bdnf), transcript variant 3, mRNA. | NM_001048141.1 | 0.5334656 | B |
| TIMP3 | tissue inhibitor of metalloproteinase 3 (Timp3), mRNA. | NM_011595.2NM_011595.2 | 0.53376130.6267908 | E |
| CRYAB | crystallin, alpha B (Cryab), mRNA. | NM_009964.1 | 0.5387105 | B |
| ASS1 | argininosuccinate synthetase 1 (Ass1), mRNA. | NM_007494.3 | 0.5595178 | |
| ESD | esterase D/formylglutathione hydrolase (Esd), mRNA. | NM_016903.2 | 0.5693265 | |
| INHBA | inhibin beta-A (Inhba), mRNA. | NM_008380.1 | 0.5792015 | B |
| CD44 | CD44 antigen (Cd44), transcript variant 2, mRNA | NM_001039150.1 | 0.5834 | B |
| GREM1 | gremlin1 (Grem1) mRNA. | NM_011824.1 | 0.5978743 | B |
| GDF15 | growth differentiation factor 15 (Gdf15), mRNA. | NM_011819.1 | 0.5985932 | T |
| MUSTN1 | musculoskeletal, embryonic nuclear protein 1 (Mustn1), mRNA. | NM_181390.1 | 0.6015734 | B |
| MDM2 | transformed mouse 3T3 cell double minute 2 (Mdm2), mRNA. | NM_010786.2 | 0.6034403 | |
| KCTD10 | potassium channel tetramerisation domain containing 10 (Kctd10), mRNA. | NM_026145.3 | 0.61132 | IC |
| EEF1A2 | eukaryotic translation elongation factor 1 alpha 2 (Eef1a2), mRNA. | NM_007906.2 | 0.6231256 | A |
| WHRN | whirlin (Whrn), transcript variant 3, mRNA | NM_001008792.1 | 0.6237 | |
| EPHX1 | epoxide hydrolase 1, microsomal (Ephx1), mRNA | NM_010145.2 | 0.6255 | |
| HIST1H4H | histone cluster 1, H4h (Hist1h4h), mRNA | NM_153173.2 | 0.635 | H |
| STMN2 | stathmin-like 2 (Stmn2), mRNA | NM_025285.2 | 0.645 | B |
| SCX | scleraxis (Scx), mRNA. | NM_198885.2 | 0.6553575 | B |
All -fold changes < 0.66, all p values < 0.05. Multiple entries for a gene indicate multiple probes. C: Clustering: A: apoptosis/survival, B: bone metabolism and bone morphogenic proteins, E: extracellular matrix, H: histone, HS: heat shock, IC: ion channel, P: prolactin, T: tumor growth factor, W: Wnt.
Genes (50) downregulated by both Pthrp ablation and microgravity and upregulated by PTHrP1-36 treatment.
| Target ID | Definition (all probes: | RefSeqID | Fold change PTHrP 1–36 treatment | C |
|---|---|---|---|---|
| RBM3 | PREDICTED: similar to RNA binding motif protein 3 (LOC100043257), mRNA. | XM_001480197.1 | 3.316729 | A |
| HIST1H2AD | histone cluster 1, H2ad (Hist1h2ad), mRNA. | NM_178188.3 | 3.070246 | H |
| HIST1H2AH | histone cluster 1, H2ah (Hist1h2ah), mRNA. | NM_175659.1 | 2.644405 | H |
| HIST1H2AN | histone cluster 1, H2an (Hist1h2an), mRNA. | NM_178184.1 | 2.629741 | H |
| HIST1H2AK | histone cluster 1, H2ak (Hist1h2ak), mRNA. | NM_178183.1 | 2.619065 | H |
| PTN | pleiotrophin (Ptn), mRNA. | NM_008973.2 | 2.610166 | B |
| HIST1H2AF | histone cluster 1, H2af (Hist1h2af), mRNA. | NM_175661.1 | 2.590586 | H |
| HIST1H2AO | histone cluster 1, H2ao (Hist1h2ao), mRNA. | NM_178185.1 | 2.363633 | H |
| 2310061N23RIK | interferon, alpha-inducible protein 27 (Ifi27), mRNA. | NM_029803.1 | 2.240007 | A |
| CENPA | centromere protein A (Cenpa), mRNA. | NM_007681.2 | 2.217246 | |
| HIST1H2AG | histone cluster 1, H2ag (Hist1h2ag), mRNA. | NM_178186.2 | 2.186001 | H |
| LUM | lumican (Lum), mRNA. | NM_008524.1 | 2.127828 | E |
| ITM2A | integral membrane protein 2A (Itm2a), mRNA. | NM_008409.2 | 2.072151 | B |
| IGFBP5 | insulin-like growth factor binding protein 5 (Igfbp5), mRNA. | NM_010518.2 | 2.068563 | I |
| DCN | decorin (Dcn), mRNA. | NM_007833.4 | 2.0663121.731693 | E |
| 1500015O10RIK | RIKEN cDNA 1500015O10 gene (1500015O10Rik), mRNA. | NM_024283.2 | 1.860714 | |
| MFAP2 | microfibrillar-associated protein 2 (Mfap2), mRNA. | NM_008546.2 | 1.8432941.5754411.501827 | B |
| TK1 | thymidine kinase 1 (Tk1), mRNA | NM_009387.1 | 1.8403 | |
| ALOX5AP | arachidonate 5-lipoxygenase activating protein (Alox5ap), mRNA | NM_009663.1 | 1.8329 | |
| CDKN1C | cyclin-dependent kinase inhibitor 1C (P57) (Cdkn1c), mRNA. | NM_009876.3 | 1.797543 | CC |
| GPR23 | G protein-coupled receptor 23 (Gpr23), mRNA | NM_175271.2 | 1.7145 | |
| CD52 | CD52 antigen (Cd52), mRNA. | NM_013706.1 | 1.688404 | |
| C1QA | complement component 1, q subcomponent, alpha polypeptide (C1qa), mRNA. | NM_007572.2 | 1.685787 | |
| CTSC | cathepsin C (Ctsc), mRNA. | NM_009982.2 | 1.68393 | E |
| ALDH3B1 | aldehyde dehydrogenase 3 family, member B1 (Aldh3b1), mRNA. | NM_026316.2 | 1.678022 | |
| TGFBI | transforming growth factor, beta induced (Tgfbi), mRNA. | NM_009369.1 | 1.664148 | T |
| FMO1 | flavin containing monooxygenase 1 (Fmo1), mRNA. | NM_010231.2 | 1.657767 | |
| IGF2 | insulin-like growth factor 2 (Igf2), mRNA. | NM_010514.2 | 1.656335 | I |
| CYP7B1 | cytochrome P450, family 7, subfamily b, polypeptide 1 (Cyp7b1), mRNA. | NM_007825.3 | 1.652679 | |
| CXCL12 | chemokine (C-X-C motif) ligand 12 (Cxcl12) mRNA. | NM_013655.2 | 1.637518 | CH |
| LDB2 | LIM domain-binding 2 (Ldb2) mRNA. | NM_010698.2 | 1.634978 | |
| CORO1A | coronin, actin binding protein 1A (Coro1a), mRNA. | NM_009898.2 | 1.6294451.620518 | |
| EMR1 | EGF-like module containing, mucin-like, hormone receptor-like sequence 1 (Emr1), mRNA. | NM_010130.3 | 1.626247 | |
| KNG1 | kininogen 1 (Kng1), mRNA. | NM_023125.2 | 1.5999 | |
| OLFML1 | olfactomedin-like 1 (Olfml1), mRNA. | NM_172907.2 | 1.599738 | |
| AOC3 | amine oxidase, copper containing 3 (Aoc3), mRNA. | NM_009675.1 | 1.598282 | |
| GMFG | glia maturation factor, gamma (Gmfg), transcript variant 1, mRNA. | NM_022024.2 | 1.5965611.532455 | |
| NCF4 | neutrophil cytosolic factor 4 (Ncf4), mRNA. | NM_008677.1 | 1.593552 | |
| SFRP2 | secreted frizzled-related protein 2 (Sfrp2), mRNA. | NM_009144.1 | 1.589225 | W |
| SMARCA1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (Smarca1), mRNA. | NM_053123.3 | 1.5706 | |
| SIRPB1 | signal-regulatory protein beta 1 (Sirpb1), transcript variant 3, mRNA. | NM_001002898.1 | 1.559451 | |
| RASSF4 | Ras association (RalGDS/AF-6) domain family member 4 (Rassf4), mRNA. | NM_178045.3 | 1.558789 | |
| KCNAB2 | potassium voltage-gated channel, shaker-related subfamily, beta member 2 (Kcnab2), mRNA. | NM_010598.2 | 1.556591 | IC |
| LSP1 | PREDICTED: predicted gene, ENSMUSG00000043795 (ENSMUG00000043795), mRNA | XM_001480835.1 | 1.5468 | |
| COL3A1 | collagen, type III, alpha 1 (Col3a1), mRNA. | NM_009930.1 | 1.531741 | E |
| SRPX | sushi-repeat-containing protein (Srpx), mRNA. | NM_016911.4 | 1.522525 | |
| DAB2 | disabled 2 mitogen-responsive phosphoprotein (Dab2) mRNA | NM_023118.1 | 1.519832 | |
| EVI2A | ecotropic viral integration site 2a (Evi2a), transcript variant 2, mRNA. | NM_010161.3 | 1.517936 | |
| NID2 | nidogen 2 (Nid2), mRNA. | NM_008695.2 | 1.506611 | E |
| C1QB | complement component 1, q subcomponent, beta polypeptide (C1qb), mRNA. | NM_009777.2 | 1.503228 |
All -fold changes > 1.5, all p values < 0.05. C: Clustering: A: apoptosis/survival, B: bone metabolism and bone morphogenic proteins, CC: cell cycle, CH: chemokines, E: extracellular matrix, H: histone, I: Insulin-like growth factor, IC: ion channel, T: tumor growth factor, W: Wnt.