Literature DB >> 35593444

Machine Learning on a Robotic Platform for the Design of Polymer-Protein Hybrids.

Matthew J Tamasi1, Roshan A Patel2, Carlos H Borca2, Shashank Kosuri1, Heloise Mugnier1, Rahul Upadhya1, N Sanjeeva Murthy1, Michael A Webb2, Adam J Gormley1.   

Abstract

Polymer-protein hybrids are intriguing materials that can bolster protein stability in non-native environments, thereby enhancing their utility in diverse medicinal, commercial, and industrial applications. One stabilization strategy involves designing synthetic random copolymers with compositions attuned to the protein surface, but rational design is complicated by the vast chemical and composition space. Here, a strategy is reported to design protein-stabilizing copolymers based on active machine learning, facilitated by automated material synthesis and characterization platforms. The versatility and robustness of the approach is demonstrated by the successful identification of copolymers that preserve, or even enhance, the activity of three chemically distinct enzymes following exposure to thermal denaturing conditions. Although systematic screening results in mixed success, active learning appropriately identifies unique and effective copolymer chemistries for the stabilization of each enzyme. Overall, this work broadens the capabilities to design fit-for-purpose synthetic copolymers that promote or otherwise manipulate protein activity, with extensions toward the design of robust polymer-protein hybrid materials.
© 2022 The Authors. Advanced Materials published by Wiley-VCH GmbH.

Entities:  

Keywords:  Bayesian optimization; active learning; combinatorial polymer design; machine learning; polymer-protein conjugates; protein formulations; single-enzyme nanoparticles

Mesh:

Substances:

Year:  2022        PMID: 35593444      PMCID: PMC9339531          DOI: 10.1002/adma.202201809

Source DB:  PubMed          Journal:  Adv Mater        ISSN: 0935-9648            Impact factor:   32.086


  36 in total

1.  From Local Explanations to Global Understanding with Explainable AI for Trees.

Authors:  Scott M Lundberg; Gabriel Erion; Hugh Chen; Alex DeGrave; Jordan M Prutkin; Bala Nair; Ronit Katz; Jonathan Himmelfarb; Nisha Bansal; Su-In Lee
Journal:  Nat Mach Intell       Date:  2020-01-17

Review 2.  Engineering enzyme microenvironments for enhanced biocatalysis.

Authors:  Louis Lancaster; Walaa Abdallah; Scott Banta; Ian Wheeldon
Journal:  Chem Soc Rev       Date:  2018-07-17       Impact factor: 54.564

3.  Synergistic Enzyme Mixtures to Realize Near-Complete Depolymerization in Biodegradable Polymer/Additive Blends.

Authors:  Christopher DelRe; Boyce Chang; Ivan Jayapurna; Aaron Hall; Ariel Wang; Kyle Zolkin; Ting Xu
Journal:  Adv Mater       Date:  2021-10-08       Impact factor: 30.849

4.  Machine learning in combinatorial polymer chemistry.

Authors:  Adam J Gormley; Michael A Webb
Journal:  Nat Rev Mater       Date:  2021-02-05       Impact factor: 76.679

5.  Automation of Controlled/Living Radical Polymerization.

Authors:  Matthew Tamasi; Shashank Kosuri; Jason DiStefano; Robert Chapman; Adam J Gormley
Journal:  Adv Intell Syst       Date:  2019-12-03

6.  Precise Polymer Synthesis by Autonomous Self-Optimizing Flow Reactors.

Authors:  Maarten Rubens; Jeroen H Vrijsen; Joachim Laun; Tanja Junkers
Journal:  Angew Chem Int Ed Engl       Date:  2018-11-21       Impact factor: 15.336

7.  Near-complete depolymerization of polyesters with nano-dispersed enzymes.

Authors:  Christopher DelRe; Yufeng Jiang; Philjun Kang; Junpyo Kwon; Aaron Hall; Ivan Jayapurna; Zhiyuan Ruan; Le Ma; Kyle Zolkin; Tim Li; Corinne D Scown; Robert O Ritchie; Thomas P Russell; Ting Xu
Journal:  Nature       Date:  2021-04-21       Impact factor: 49.962

8.  ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions.

Authors:  D Franke; M V Petoukhov; P V Konarev; A Panjkovich; A Tuukkanen; H D T Mertens; A G Kikhney; N R Hajizadeh; J M Franklin; C M Jeffries; D I Svergun
Journal:  J Appl Crystallogr       Date:  2017-06-26       Impact factor: 3.304

9.  Designing exceptional gas-separation polymer membranes using machine learning.

Authors:  J Wesley Barnett; Connor R Bilchak; Yiwen Wang; Brian C Benicewicz; Laura A Murdock; Tristan Bereau; Sanat K Kumar
Journal:  Sci Adv       Date:  2020-05-15       Impact factor: 14.136

10.  Discovery of Self-Assembling π-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation.

Authors:  Kirill Shmilovich; Rachael A Mansbach; Hythem Sidky; Olivia E Dunne; Sayak Subhra Panda; John D Tovar; Andrew L Ferguson
Journal:  J Phys Chem B       Date:  2020-03-30       Impact factor: 2.991

View more
  2 in total

1.  Machine Learning on a Robotic Platform for the Design of Polymer-Protein Hybrids.

Authors:  Matthew J Tamasi; Roshan A Patel; Carlos H Borca; Shashank Kosuri; Heloise Mugnier; Rahul Upadhya; N Sanjeeva Murthy; Michael A Webb; Adam J Gormley
Journal:  Adv Mater       Date:  2022-06-11       Impact factor: 32.086

2.  Machine learning strategies for the structure-property relationship of copolymers.

Authors:  Lei Tao; John Byrnes; Vikas Varshney; Ying Li
Journal:  iScience       Date:  2022-06-10
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.