| Literature DB >> 35590413 |
Sergio De Salvatore1,2, Laura Ruzzini3, Umile Giuseppe Longo4,5, Martina Marino1,2, Alessandra Greco1,2, Ilaria Piergentili1,2, Pier Francesco Costici3, Vincenzo Denaro1,2.
Abstract
BACKGROUND: Idiopathic Scoliosis (IS) is the most common spinal deformity in adolescents, accounting for 80% of all spinal deformities. However, the etiology remains uncertain in most cases, being identified as Adolescent Idiopathic Scoliosis (AIS). IS treatments range from observation and sport to bracing or surgery. Several risk factors including sex and familiarity, have been linked with IS. Although there are still many uncertainties regarding the cause of this pathology, several studies report a greater incidence of the defect in families in which at least one other first degree relative is affected. This study systematically reviews the available literature to identify the most significant genes or variants related to the development and onset of IS.Entities:
Keywords: Diagnosis; Early onset; Genetic; Idiopathic scoliosis; Scoliosis
Mesh:
Substances:
Year: 2022 PMID: 35590413 PMCID: PMC9118580 DOI: 10.1186/s12920-022-01272-2
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.063
Fig. 1PRISMA Flowchart
Primary author, year of publication, country, type of study, level of evidence (LOE), diagnosis method, age of IS on-set and associated pathology of the included studies
| Author, year | Country | Type of study, level of evidence | DNA extraction protocol | Age of IS onset | Associated pathology | |
|---|---|---|---|---|---|---|
| Early Onset | Late Onset | |||||
| Alden, 2006 | USA | Cohort study, Level 3 | Standard Purification Protocols | |||
| Borysiak, 2020 | Poland | Cohort study, Level 3 | AxyPrep Blood Genomic DNA Miniprep Kit | |||
| Buchan, July 2014 | USA | Case–control cohort study, Level 3 | Isolation Kit for Mammalian Blood or Oragene1 Purifier | x | Trisomy X, 1.8% (2/114) | |
| Buchan, May 2014 | USA, China | Case–control cohort study, Level 3 | Genome Analyzer IIx or HiSeq 2000 sequencer SureSelect Human All Exon 38 Mb and 50 Mb kits or TruSeq Exome Enrichment kit | x | Marfan Syndrome | |
| Kotwicki, 2014 | Poland | Case–control study, Level 3 | PCR restriction fragment length polymorphism (PCR–RFLP) | |||
| Kou, 2019 | Japan | Cohort study, Level 3 | x | |||
| Liu, 2017 | China | Case–control association study, Level 3 | Sequenom MassARRAY SNP genotyping platform | |||
| Moon, 2013 | South Korea | Case–control study, level 3 | Single base primer extension assay | x | ||
| Nikolova, 2016 | Bulgaria, Japan | Case–control study, Level 3 | PCR | 1–3 years of age (4) 3–9 years of age (23), | 10–16 years of age (78) | |
| Ogura, 2013 | Japan | Retrospective cohort study, Level 3 | Invaer Assay | |||
| Sadler, 2019 | USA | Cohort study, Level 3 | IDT xGen Exome Panel V1 capture on Illumina HiSeq 4000 paired-end reads | x | x | |
| Sharma, 2011 | USA | Case–control cohort study, Level 3 | Genotyped on Illumina Human CNV370-Quad arrays | |||
| Takahashi, 2018 | Japan | Case–control study, Level 3 | PCR-based Invader assay | x | ||
| Takeda, 2017 | Japan | Case–control study, Level 3 | TaqMan real-time quantitative PCR, Microsatellite analysis, Sanger sequencing | Vertebral malformations | ||
| Wang, 2008 | China | Cohort study, Level 3 | PCR | x | x | |
| Wang, 2020 | China | Cross-sectional study, Level 4 | Whole-exome sequencing | x | ||
| Wu, 2006 | China | Case–control study, level 3 | PCR, Electrophoresis | |||
| Xu, 2015 | China | Retrospective case control study, Level 3 | TaqMan SNP Genotyping Assay | x | ||
| Xu, 2020 | China | Case–control association study, Level 3 | Genome DNA Extraction with QIAGEN kit, Sanger Sequencing (10%), Exon Sequencing (192) | |||
| Yilmaz, 2012 | Turkey | Case–control study, level 3 | RT-PCR | |||
| Zhao, 2009 | China | Case–control study, Level 3 | QIAamp DNA Blood Mini kit | x | ||
| Zhao, 2020 | China | Cohort study, Level 3 | x | |||
| Zhou, 2012 | China | Case–control study, Level 3 | PCR restriction fragment length polymorphism (PCR–RFLP) | x | ||
| Zhu, 2014 | China | Case–control association study, Level 3 | ||||
PCR Polymerase Chain Reaction, Dup Duplication, Del Deletion, RT-PCR real-time polymerase chain reaction
Primary author, year of publication, affected gene, frequency in cases and statistical association of the included studies
| Author, year | Affected gene | Sample size | Frequency in cases | Statistical assocation | |||
|---|---|---|---|---|---|---|---|
| Cases | Controls | Cases | Controls | P value | Odds ratio | ||
| Alden, 2006 | Chromosome 19p13: D19S591 D19S1034 D19S922 D19S714 | 703 | 495 | Not Reported | Not Reported | 0.0233* 0.0366* 0.0018(singlepoint)* 0.042 (multipoint)* 0.035* | |
| Borysiak, 2020 | Gene: CHD7 rs1017861 G: A: GG: GA: AA: rs4738824 G: A: GG: GA: AA: rs4738813 T: C: TT: CT: CC: | 211 | 83 | (%) rs1017861 87.7 12.3 77.2 28 1.9 rs4738824 81.8 18.3 65.9 31.7 2.4 rs4738813 68.7 31.2 48.2 41 10.8 | (%) rs1017861 74.6 25.4 55.4 38.6 6.0 rs4738824 79.5 20.5 63.9 32.1 4.8 rs4738813 69.3 30.7 49.4 39.8 10.8 | rs1017861 Alleles: 0.0001 Dominant Model: 0.06* Recessive Model: 0.002* rs4738824 Alleles: 0.53 Dominant Model: 0.47 Recessive Model: 0.84 rs4738813 Alleles: 0.97 Dominant Model: 0.99 Recessive Model: 0.97 | 2.4 (1.5–3.8) 3.3 (0.9–12.7) 0.4 (0.2–0.6) 0.84 (0.6–1.2) 2.1 (0.6–7.9) 0.9 (0.5–1.6) 0.97 (0.66–1.44) 0.99 (0.44–2.25) 0.96 (0.58–1.59) |
| Buchan, July 2014 | CNV: 16p11.2 1q21.1 duplication (proximal) 2q13 duplication 15q11.2 deletion 15q11.2 duplication 16p11.2 duplication | 143 | 1079 | (n) 3 1 1 1 1 | (n) 1 7 4 5 2 | 0.0057* 0.6316 0.4639 0.5269 0.3118 | |
| Buchan, May 2014 | FBN1 FBN2 FBN1 or FBN2 | 323 | 493 | (n) 13/311 11/316 24/304 | (n) 5/489 5/427 10/425 | 0.0041* 0.0307* 0.000546* | 4.2 3.0 3.5 |
| Kotwicki, 2014 | Gene ESR2 C/T rs1256120 A/G rs4986938 A/G rs1256049 | 248 | 243 | Not Reported | Not Reported | 0.1716 | (0.2646–1.886) (0.6234–1.276) 1.557 |
| Kou, 2019 | LOC101928978: rs141903557 MTMR11: rs11205303 ARF1: rs12029076 TBX1: rs1978060 LINC02378/MIR3974: rs2467146 CSMD1: rs11787412 KIF24: rs188915802 BCKDHB/FAM46A: rs658839 CREB5: rs160335 NT5DC1: rs482012 LOC101927021/UNCX: rs11341092 PLXNA2: rs17011903 AGMO/MEOX2: rs397948882 FTO: rs12149832 LINC01514/LBX1: rs11190870 ADGRG6: rs9389985 BNC2: rs7028900 ABO: rs144131194 PAX1/LINC01432: rs6047716 CDH13: rs2194285 | 5327 | 73,884 | Risk Allele Frequency 0.060 0.24 0.81 0.49 0.70 0.42 0.019 0.54 0.54 0.74 0.33 0.11 0.11 0.82 0.66 0.48 0.46 0.58 0.51 0.13 | Risk Allele Frequency 0.047 0.21 0.78 0.47 0.67 0.38 0.013 0.51 0.51 0.72 0.31 0.10 0.10 0.79 0.56 0.43 0.42 0.55 0.47 0.11 | 9.78 × 10 − 11* 1.62 × 10 − 10* 2.17 × 10 − 10* 3.26 × 10 − 10* 5.96 × 10 − 10* 1.32 × 10 − 9* 1.94 × 10 − 9* 3.15 × 10 − 9* 9.10 × 10 − 9* 2.30 × 10 − 8* 2.92 × 10 − 8* 3.56 × 10 − 8* 3.66 × 10 − 8* 4.40 × 10 − 8* 2.01 × 10 − 82* 3.51 × 10 − 20* 2.19 × 10 − 17* 1.35 × 10 − 11* 1.45 × 10 − 11* 8.69 × 10 − 9* | 1.33 1.17 1.18 1.16 1.15 1.14 1.66 1.14 1.13 1.14 1.14 1.20 1.20 1.16 1.52 1.21 1.20 1.15 1.15 1.19 |
| Liu, 2017 | Gene: LBX1 rs11190870 allele: C allele: T rs1322331 allele: T allele: G rs4917933 allele: A allele: G rs625039 allele: A allele: G rs11190872 allele: T allele: C | 180 | 182 | (n) 150 210 182 178 20 340 124 236 13 347 | (n) 195 169 138 226 26 336 155 209 22 342 | 1.34 × 10–3* 6.15 × 10–4* 0.371 2.45 × 10–2* 0.127 | |
| Moon, 2013 | CHL1 rs10510181 DSCAM rs2222973 LAPTM4B rs2449539 FOXB1 rs1437480 CBLN4 rs448013 RRAGC rs10493083 BRIP1 rs16945692 MATN1 rs1149048 MTNR1B rs4753426 IGF1 rs5742612 | 35 | 68 | Not Reported | Not Reported | (Allele) 0.965 0.207 0.002* 0.875 0.114 0.363 0.286 0.750 0.152 0.059 | |
| Nikolova, 2016 | Gene: IL-6 rs1800795 | 105 | 210 | (%) (G = Risk Allele) GG: 51.4 CG: 38.1 CC: 10.5 G: 70.5% | (%) GG: 30.0 CG: 44.8 CC: 25.2 G: 52.4% | < 0.0001* | |
| Ogura, 2013 | rs7613792 rs16902899 rs2700910 rs10787096 rs1558729 rs17635546 | 2117 | Not Reported | Not Reported | 0.66 1 1 0.701 1 1 | 0.84 (0.36–1.94) 0.99 (0.23–4.15 N/A 1.39 (0.31–6.24) N/A N/A | |
| Sadler, 2019 | Gene: SH2B1 1q21.1 2q13 15q11.2 15q13.3 16p13.11 Distal 16p11.2 Proximal16p11.2 HNPP/CMT1A 17q12 DiGeorge/VCFS | 1197 | 1664 | (n) Dup: 1 Del: 3 Del: 2, Dup: 0 Dup: 1 Del: 1, Dup: 1 Del: 0, Dup: 8 Del: 1 Del: 1 Del: 1, Dup: 1 Del: 2 | (n) Dup: 0 Del: 0 Del: 2, Dup: 2 Dup: 0 Del: 2, Dup: 1 Del: 1, Dup: 1 Del: 0 Del: 1 Del: 0, Dup: 1 Del: 0 | Dup: 0.42 Del: 0.07 Del:0.56, Dup:1 Dup: 0.42 Del:0.80, Dup:0.66 Del: 1, Dup: 0.005* Del: 0.42 Del: 0.66 Del: 0.42, Dup: 0.66 Del: 0.18 | |
| Sharma, 2011 | Gene: CHL1 rs1400180 rs9754850 rs9754552 rs10510181 | 375 | 444 | $ 0.43 0.51 0.51 0.38 | $ 0.41 0.44 0.44 0.30 | 0.56 0.044* 0.049* 0.021* | 1.09 1.35 1.34 1.42 |
| Takahashi, 2018 | Gene: LBX1 rs11190870 | 2191 | (n) (T = Risk Allele) TT: 818 TC: 865 CC: 177 | Not Reported | 0.13 | ||
| Takeda, 2017 | Gene: TBX6 16p11.2del c.699G > A c.156delG c.935_936insGA c.333G > T | 94 | $$$ (n) 5 1 1 1 1 | Not Reported | |||
| Wang, 2008 | Gene: TPH1 Allele A of rs10488682 A/Ahomozgote genotype | 103 | 108 | $$ (%) 19.9 39.8 | (%) 7.9 15.7 | 0.0003* 0.001* | 2.909 |
| Wang, 2020 | Missense variant in ESR1 (c.868A > G) Missense variant in ESR2 (c.236 T > C) | 113 | Not Reported | Not Reported | 0.026* 0.014* | ||
| Wu, 2006 | PvuII, XbaI polymorphisms of Estrogen Receptor Gene PPXX PPXx PPxx PpXX PpXx Ppxx ppXX ppXx ppxx | 174 | 202 | (n), (%) 19, 9.40 8, 3.96 12, 5.94 21, 10.40 43, 21.29 28, 13.86 14, 6.93 25, 12.38 32, 15.84 | (n), (%) 13, 7.47 13, 7.47 14, 8.05 8, 4.60 36, 20.69 26, 14.94 5, 2.87 17, 9.77 42, 24.14 | 0.53 0.139 0.422 0.036* 0.887 0.766 0.073 0.424 0.044* | 1.29 0.51 0.72 2.41 1.04 0.92 2.52 1.30 0.59 |
| Xu, 2015 | allele G of rs12618119: allele A of rs9945359: allele T of rs4661748: allele C of rs4782809: | 990 | 1188 | $$ (%) 46.5 22.6 15.6 42.4 | (%) 40 18.4 19.4 47.4 | < 0.001* | 1.29 1.29 0.77 0.82 |
| Xu, 2020 | Gene: SLC39A8 rs11097773 | 192 | 192 | (G = Risk Allele) (n) GG: 2 AG: 26 AA: 164 | (n) GG: 6 AG: 45 AA: 141 | 0.01* | 0.486 |
| Yilmaz, 2012 | MCM6 (6p21) MATN-1 (1p35) VFR BsmI (12q13.1) | 54 | 53 | (n), (%) CC: 47, 89 CT: 6, 11 TT: 0, 0 AA: 20, 37.7 AG: 23, 43.3 GG: 10 (19%) GG: 19, 36 AG: 26, 49 AA: 8, 15 | (n), (%) CC: 48, 88 CT: 5, 9.2 TT: 1, 1.8% AA: 16, 29.6 AG: 28, 51.8 GG: 10, 18.5 GG: 22, 40.74 AG: 26, 48.15 AA: 6, 11.11 | 0.97 0.66 0.59 | 1.16 (0.3–4.0) 1.17 (0.6–2.1) 0.8 ( 0.5–1.5) |
| Zhao, 2009 | Gene: CALM1 rs12885713 rs5871 Gene: ER1 rs2234693 | 67 | 100 | (n), (%) C allele—T allele 96 (71.6)—38 (28.4) 59 (44)—75 (56) 41 (30.6)—93 (69.4) | (n), (%) C allele—T allele 163 (81.5)—37 (18.5) 109 (54.5)—91 (45.5) 88 (44)—112 (56) | 0.034* 0.061 0.014* | |
| Zhao, 2020 | Gene: TBX6 16p11.2del | 447 | (n) 41 | Not Reported | |||
| Zhou, 2012 | Gene: IL-17RC allele G of rs708567 GG genotype | 529 | 512 | $$ (%) 90.17 95.1 | (%) 85.55 92.8 | 0.028* 0.023* | |
| Zhu, 2014 | Gene: SOCS3 rs4969168 AA AG GG A G | 398 | 367 | (n) 56 215 127 327 469 | (n) 49 208 110 306 428 | AA: 0.587 A: 0.835 | |
$Case: Control risk allele frequencies; $$percentage of patients and controls with variant gene/deletion; $$$number of patients with variant gene/deletion; * p < 0–05
Fig. 2ROBINS-I Diagram