| Literature DB >> 35584320 |
Zheng Feng1, Cary J G Oberije1,2, Alouisa J P van de Wetering1,3, Alexander Koch1, Kim A D Wouters1, Nathalie Vaes1, Ad A M Masclee3,4, Beatriz Carvalho5, Gerrit A Meijer5, Maurice P Zeegers6,7, James G Herman8, Veerle Melotte1,9, Manon van Engeland1, Kim M Smits1,10.
Abstract
OBJECTIVES: To improve colorectal cancer (CRC) survival and lower incidence rates, colonoscopy and/or fecal immunochemical test screening are widely implemented. Although candidate DNA methylation biomarkers have been published to improve or complement the fecal immunochemical test, clinical translation is limited. We describe technical and methodological problems encountered after a systematic literature search and provide recommendations to increase (clinical) value and decrease research waste in biomarker research. In addition, we present current evidence for diagnostic CRC DNA methylation biomarkers.Entities:
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Year: 2022 PMID: 35584320 PMCID: PMC9236597 DOI: 10.14309/ctg.0000000000000499
Source DB: PubMed Journal: Clin Transl Gastroenterol ISSN: 2155-384X Impact factor: 4.396
Figure 1.Venn diagram of studies and markers. (a) Article overview: Among 331 articles, there were 195 articles focusing on tissue, 92 articles on bodily fluid samples, and 44 studies using both tissue and bodily fluid samples. (b) Marker overview: A total of 331 articles generated 434 biomarkers. 334 markers were studied in tissue, 23 markers in bodily fluid samples, and 77 markers in both tissue and bodily fluid samples.
Figure 2.Number of yearly publications for the tissue-based (a) and body fluid-based (b) colorectal cancer DNA methylation biomarkers studied more than once; darker colors reflect a higher number of publications for the specified biomarker in a particular year. The gliding box indicates the publication count by color. The length of bars represents the total number of publications of the specified biomarker from 1985 to 2020.
Figure 3.Forest plots of reported DNA methylation markers in colorectal cancer studies.
Figure 4.Quality assessment (STARD) of 136 articles reporting bodily fluid-based DNA methylation biomarkers for CRC. (a) Histogram depicting the STARD score distribution for bodily fluid-based biomarker studies (mean STARD score = 13.0, SD = 3.5). (b) Stacked bar chart showing the percentage of completeness of each STARD item. CRC, colorectal cancer.
Figure 5.Gap between colorectal cancer methylation marker research and clinical implementation. (a) The clinical translation rate of DNA methylation markers for early diagnosis of CRC (0.8%) was calculated by comparing the number of commercially available biomarkers with the total number of published biomarkers (from 1985 to 2020). (b) Four stages of waste in the development and reporting of DNA methylation marker research in CRC relevant to clinicians and patients (adapted from avoidable waste in the production and reporting of research evidence. Chalmers et al. Lancet 2009). CRC, colorectal cancer.
Recommendations for future DNA methylation biomarker studies
| General |
| • Update reporting guidelines specifically for biomarker studies |
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| • Consensus statement clinical need |
| • Define intended biomarker use and select biomarkers accordingly |
| • Evaluate available evidence and current LoE |
| • Define study design to complement available evidence and add to LoE |
| • Define specimen and cohort to complement available evidence and facilitate external validation or meta-analyses |
| • Define the technical method to facilitate external validation and meta-analyses |
| • Define a suitable performance measure to facilitate external validation or meta-analyses |
| • Define the rationale for cutoff in quantitative analyses and/or define criteria for sensitivity and specificity a priori |
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| • Compare results with goldn standard methods (e.g., FIT) to complement available evidence |
| • Adhere to reporting guidelines to facilitate external validation or meta-analyses |
FIT, fecal immunochemical test; LoE, level of evidence.